Wall clock time and date at job start Sat Apr 11 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00187 * 2 1 4 4 H 1.09000 * 109.47001 * 23.98077 * 3 2 1 5 5 C 1.50697 * 109.47527 * 143.98321 * 3 2 1 6 6 O 1.21278 * 119.99782 * 4.99999 * 5 3 2 7 7 N 1.34777 * 120.00336 * 184.99726 * 5 3 2 8 8 C 1.46505 * 119.99612 * 0.02562 * 7 5 3 9 9 C 1.46496 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.08994 * 110.87803 * 2.39488 * 9 7 5 11 11 C 1.55138 * 110.98967 * 238.54528 * 9 7 5 12 12 C 1.54327 * 103.01833 * 206.21803 * 11 9 7 13 13 N 1.47441 * 107.23143 * 22.28925 * 12 11 9 14 14 C 1.46897 * 111.00245 * 123.25649 * 13 12 11 15 15 C 1.50703 * 109.46958 * 69.86809 * 14 13 12 16 16 O 1.21297 * 120.00394 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00094 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00199 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00120 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00137 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00170 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46880 * 119.99945 * 22 20 18 25 25 H 1.48495 * 109.47336 * 239.99797 * 22 20 18 26 26 C 1.47849 * 108.56947 * 0.98542 * 13 12 11 27 27 C 1.53003 * 109.46789 * 263.98552 * 3 2 1 28 28 C 1.52994 * 117.50159 * 10.25863 * 27 3 2 29 29 C 1.52999 * 117.49997 * 301.59600 * 27 3 2 30 30 H 1.08998 * 109.47453 * 174.70459 * 1 2 3 31 31 H 1.08998 * 109.47436 * 294.70565 * 1 2 3 32 32 H 1.09003 * 109.46908 * 54.70800 * 1 2 3 33 33 H 1.09009 * 109.46740 * 269.99870 * 8 7 5 34 34 H 1.08997 * 109.47517 * 29.99460 * 8 7 5 35 35 H 1.08998 * 109.47335 * 150.00323 * 8 7 5 36 36 H 1.09003 * 110.70500 * 87.83737 * 11 9 7 37 37 H 1.09002 * 110.85852 * 324.67193 * 11 9 7 38 38 H 1.08999 * 109.88669 * 262.87930 * 12 11 9 39 39 H 1.09000 * 109.88351 * 141.68992 * 12 11 9 40 40 H 1.09002 * 109.47375 * 309.87573 * 14 13 12 41 41 H 1.09001 * 109.47475 * 189.86728 * 14 13 12 42 42 H 0.96999 * 119.99337 * 0.02562 * 17 15 14 43 43 H 0.96993 * 120.00427 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.36808 * 94.73186 * 26 13 12 45 45 H 1.08998 * 110.37347 * 217.07665 * 26 13 12 46 46 H 1.08999 * 115.54884 * 155.93503 * 27 3 2 47 47 H 1.09005 * 117.49460 * 0.02562 * 28 27 3 48 48 H 1.09003 * 117.50269 * 145.02027 * 28 27 3 49 49 H 1.08997 * 117.50163 * 214.98115 * 29 27 3 50 50 H 1.09003 * 117.49730 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3002 2.0193 0.4177 5 6 3.2644 1.2970 0.8354 6 8 3.6747 0.2557 1.3027 7 7 3.9301 2.4465 1.0633 8 6 3.4342 3.7043 0.4993 9 6 5.1490 2.4383 1.8760 10 1 5.4040 1.4242 2.1836 11 6 5.0031 3.3722 3.1061 12 6 6.4619 3.7684 3.4169 13 7 7.2402 3.5741 2.1798 14 6 7.9125 4.8175 1.7800 15 6 9.0179 5.1271 2.7564 16 8 9.2256 4.3848 3.6929 17 7 9.7765 6.2285 2.5885 18 6 10.7824 6.5099 3.4764 19 1 10.9673 5.8489 4.3102 20 6 11.5641 7.6455 3.3035 21 7 11.3395 8.4496 2.2886 22 14 12.9343 8.0294 4.5138 23 1 12.9812 6.9756 5.5590 24 1 14.2329 8.0707 3.7945 25 1 12.6786 9.3468 5.1496 26 6 6.3265 3.1008 1.1181 27 6 2.3557 1.7098 -1.4346 28 6 1.8262 0.8251 -2.5650 29 6 3.3154 0.8064 -2.2116 30 1 -0.3634 -1.0232 -0.0948 31 1 -0.3634 0.4295 0.9336 32 1 -0.3633 0.5937 -0.8388 33 1 3.8731 3.8585 -0.4865 34 1 2.3487 3.6598 0.4107 35 1 3.7118 4.5305 1.1539 36 1 4.5619 2.8363 3.9466 37 1 4.4094 4.2518 2.8573 38 1 6.8583 3.1323 4.2083 39 1 6.5051 4.8140 3.7218 40 1 7.1918 5.6352 1.7760 41 1 8.3327 4.6985 0.7813 42 1 9.6107 6.8219 1.8393 43 1 11.8854 9.2422 2.1677 44 1 5.9697 3.9409 0.5224 45 1 6.8283 2.3704 0.4835 46 1 2.4133 2.7824 -1.6198 47 1 1.2312 -0.0448 -2.2866 48 1 1.5356 1.3156 -3.4940 49 1 4.0040 1.2845 -2.9082 50 1 3.7010 -0.0759 -1.7005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318400034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:13 Heat of formation + Delta-G solvation = -62.903502 kcal Electronic energy + Delta-G solvation = -30202.821757 eV Core-core repulsion = 26039.017365 eV Total energy + Delta-G solvation = -4163.804392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85257 -39.37099 -38.29666 -37.39669 -36.32448 -35.29145 -33.85554 -31.62649 -31.08270 -29.56637 -28.42924 -27.34716 -26.72900 -26.06790 -24.20137 -22.78616 -22.10200 -21.00827 -20.83546 -19.53144 -18.97030 -17.86174 -17.69312 -17.28379 -16.86970 -16.26277 -15.96734 -15.47767 -15.37686 -15.05852 -14.86295 -14.50647 -14.26408 -13.91587 -13.79920 -13.58648 -13.35704 -13.24098 -13.09066 -13.05665 -12.72991 -12.22521 -12.13822 -11.87633 -11.78669 -11.73757 -11.61266 -11.48636 -11.40721 -11.17610 -11.01634 -10.95331 -10.78574 -10.57423 -10.33273 -10.24085 -10.21033 -9.63521 -9.49408 -8.88384 -8.43795 -7.95188 -7.88812 -6.40366 -3.80830 2.30444 2.43239 3.17219 3.27685 3.29138 3.35165 3.47861 3.92646 4.07102 4.11129 4.26220 4.29000 4.40967 4.57792 4.61554 4.67635 4.74172 4.78804 4.85238 4.95422 4.96864 5.03108 5.07225 5.17427 5.24879 5.25640 5.25995 5.34159 5.34535 5.40327 5.51112 5.65538 5.73248 5.76891 5.78810 5.87270 5.91411 5.99020 6.06981 6.24200 6.30653 6.44574 6.60825 7.10156 7.23389 7.24047 7.56955 7.94103 8.08312 8.63902 9.20290 9.56471 10.08712 10.77621 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.001989 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.533588 B =14074.230811 C =14506.507748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.104 3.896 4 H 0.090 0.910 5 C 0.520 3.480 6 O -0.516 6.516 7 N -0.601 5.601 8 C 0.071 3.929 9 C 0.134 3.866 10 H 0.118 0.882 11 C -0.155 4.155 12 C 0.059 3.941 13 N -0.502 5.502 14 C 0.042 3.958 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.567 5.567 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.036 3.964 27 C -0.188 4.188 28 C -0.165 4.165 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.048 0.952 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.554 -8.556 -10.501 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.043 3.957 4 H 0.108 0.892 5 C 0.307 3.693 6 O -0.390 6.390 7 N -0.336 5.336 8 C -0.072 4.072 9 C 0.030 3.970 10 H 0.135 0.865 11 C -0.194 4.194 12 C -0.068 4.068 13 N -0.227 5.227 14 C -0.089 4.089 15 C 0.229 3.771 16 O -0.458 6.458 17 N -0.204 5.204 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.092 4.092 27 C -0.207 4.207 28 C -0.201 4.201 29 C -0.200 4.200 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.591 -10.005 -9.568 27.353 hybrid contribution -0.214 1.829 -0.186 1.851 sum -23.804 -8.175 -9.755 26.993 Atomic orbital electron populations 1.22940 0.80548 1.03307 1.00250 1.88033 1.19724 1.24917 1.94578 1.21366 0.93939 0.86795 0.93626 0.89250 1.20311 0.85061 0.83486 0.80476 1.90730 1.67382 1.30846 1.50077 1.47619 1.26375 1.07463 1.52137 1.21931 0.99436 0.86508 0.99359 1.22254 0.82803 1.02029 0.89921 0.86455 1.23227 0.98590 0.99378 0.98218 1.22686 0.89080 1.01492 0.93590 1.63204 1.27505 1.29503 1.02466 1.22079 0.96669 0.90608 0.99574 1.19742 0.85545 0.83619 0.88165 1.90530 1.71899 1.49733 1.33630 1.41866 1.29900 1.21769 1.26903 1.19744 1.08173 1.07513 1.07127 0.87882 1.25252 0.99222 0.95951 0.97642 1.69617 1.40901 1.14487 1.29509 0.85809 0.80203 0.78336 0.80056 1.19219 1.20776 1.20828 1.23330 0.92223 0.99136 0.94560 1.22779 1.08152 0.98283 0.91463 1.22965 0.97595 1.01944 0.97643 1.22936 0.92734 1.01837 1.02532 0.89073 0.93827 0.93458 0.91931 0.91115 0.90475 0.90402 0.91243 0.89568 0.92324 0.93377 0.89420 0.77576 0.91995 0.93328 0.89827 0.86300 0.87913 0.88696 0.88545 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.99 101.05 1.01 1.17 16 2 O -0.36 -3.61 8.58 -55.09 -0.47 -4.09 16 3 C 0.10 0.91 2.16 -27.88 -0.06 0.85 16 4 H 0.09 0.56 6.74 -51.93 -0.35 0.21 16 5 C 0.52 6.21 6.79 -10.99 -0.07 6.13 16 6 O -0.52 -8.50 15.89 -14.30 -0.23 -8.72 16 7 N -0.60 -6.11 2.91 -171.49 -0.50 -6.61 16 8 C 0.07 0.46 7.66 59.85 0.46 0.92 16 9 C 0.13 1.65 3.45 -65.79 -0.23 1.42 16 10 H 0.12 1.74 7.01 -51.93 -0.36 1.37 16 11 C -0.15 -1.85 6.50 -24.90 -0.16 -2.01 16 12 C 0.06 0.94 5.65 -2.83 -0.02 0.92 16 13 N -0.50 -8.39 4.85 -232.68 -1.13 -9.51 16 14 C 0.04 0.75 5.03 -4.98 -0.03 0.72 16 15 C 0.44 10.49 7.43 -10.98 -0.08 10.41 16 16 O -0.57 -15.65 15.12 5.54 0.08 -15.56 16 17 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 18 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 21 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 22 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.04 0.47 6.25 -2.29 -0.01 0.46 16 27 C -0.19 -1.33 4.89 -90.62 -0.44 -1.77 16 28 C -0.16 -1.10 9.51 -26.70 -0.25 -1.35 16 29 C -0.16 -1.36 9.84 -26.69 -0.26 -1.63 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.21 7.60 -51.93 -0.39 -0.18 16 33 H 0.06 0.36 7.54 -51.92 -0.39 -0.03 16 34 H 0.07 0.31 6.00 -51.93 -0.31 0.00 16 35 H 0.08 0.50 6.32 -51.93 -0.33 0.17 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.71 6.31 -51.93 -0.33 0.39 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.06 0.98 7.31 -51.93 -0.38 0.60 16 40 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 41 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.05 0.54 6.72 -51.93 -0.35 0.20 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.12 0.61 6.61 -51.93 -0.34 0.27 16 47 H 0.10 0.74 6.29 -51.93 -0.33 0.41 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -34.75 395.86 -8.94 -43.70 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.91 Total: 8.66 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.39 Total: 8.29 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.96 Total: -54.35 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.62 Total: -28.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.75 -8.94 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318400034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.207 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds