Wall clock time and date at job start Sat Apr 11 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00187 * 2 1 4 4 H 1.09000 * 109.47001 * 23.98077 * 3 2 1 5 5 C 1.50697 * 109.47527 * 143.98321 * 3 2 1 6 6 O 1.21278 * 119.99782 * 4.99999 * 5 3 2 7 7 N 1.34777 * 120.00336 * 184.99726 * 5 3 2 8 8 C 1.46505 * 119.99612 * 0.02562 * 7 5 3 9 9 C 1.46496 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.08994 * 110.87803 * 2.39488 * 9 7 5 11 11 C 1.55138 * 110.98967 * 238.54528 * 9 7 5 12 12 C 1.54327 * 103.01833 * 206.21803 * 11 9 7 13 13 N 1.47441 * 107.23143 * 22.28925 * 12 11 9 14 14 C 1.46897 * 111.00245 * 123.25649 * 13 12 11 15 15 C 1.50703 * 109.46958 * 69.86809 * 14 13 12 16 16 O 1.21297 * 120.00394 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00094 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00199 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00120 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00137 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00170 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46880 * 119.99945 * 22 20 18 25 25 H 1.48495 * 109.47336 * 239.99797 * 22 20 18 26 26 C 1.47849 * 108.56947 * 0.98542 * 13 12 11 27 27 C 1.53003 * 109.46789 * 263.98552 * 3 2 1 28 28 C 1.52994 * 117.50159 * 10.25863 * 27 3 2 29 29 C 1.52999 * 117.49997 * 301.59600 * 27 3 2 30 30 H 1.08998 * 109.47453 * 174.70459 * 1 2 3 31 31 H 1.08998 * 109.47436 * 294.70565 * 1 2 3 32 32 H 1.09003 * 109.46908 * 54.70800 * 1 2 3 33 33 H 1.09009 * 109.46740 * 269.99870 * 8 7 5 34 34 H 1.08997 * 109.47517 * 29.99460 * 8 7 5 35 35 H 1.08998 * 109.47335 * 150.00323 * 8 7 5 36 36 H 1.09003 * 110.70500 * 87.83737 * 11 9 7 37 37 H 1.09002 * 110.85852 * 324.67193 * 11 9 7 38 38 H 1.08999 * 109.88669 * 262.87930 * 12 11 9 39 39 H 1.09000 * 109.88351 * 141.68992 * 12 11 9 40 40 H 1.09002 * 109.47375 * 309.87573 * 14 13 12 41 41 H 1.09001 * 109.47475 * 189.86728 * 14 13 12 42 42 H 0.96999 * 119.99337 * 0.02562 * 17 15 14 43 43 H 0.96993 * 120.00427 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.36808 * 94.73186 * 26 13 12 45 45 H 1.08998 * 110.37347 * 217.07665 * 26 13 12 46 46 H 1.08999 * 115.54884 * 155.93503 * 27 3 2 47 47 H 1.09005 * 117.49460 * 0.02562 * 28 27 3 48 48 H 1.09003 * 117.50269 * 145.02027 * 28 27 3 49 49 H 1.08997 * 117.50163 * 214.98115 * 29 27 3 50 50 H 1.09003 * 117.49730 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3002 2.0193 0.4177 5 6 3.2644 1.2970 0.8354 6 8 3.6747 0.2557 1.3027 7 7 3.9301 2.4465 1.0633 8 6 3.4342 3.7043 0.4993 9 6 5.1490 2.4383 1.8760 10 1 5.4040 1.4242 2.1836 11 6 5.0031 3.3722 3.1061 12 6 6.4619 3.7684 3.4169 13 7 7.2402 3.5741 2.1798 14 6 7.9125 4.8175 1.7800 15 6 9.0179 5.1271 2.7564 16 8 9.2256 4.3848 3.6929 17 7 9.7765 6.2285 2.5885 18 6 10.7824 6.5099 3.4764 19 1 10.9673 5.8489 4.3102 20 6 11.5641 7.6455 3.3035 21 7 11.3395 8.4496 2.2886 22 14 12.9343 8.0294 4.5138 23 1 12.9812 6.9756 5.5590 24 1 14.2329 8.0707 3.7945 25 1 12.6786 9.3468 5.1496 26 6 6.3265 3.1008 1.1181 27 6 2.3557 1.7098 -1.4346 28 6 1.8262 0.8251 -2.5650 29 6 3.3154 0.8064 -2.2116 30 1 -0.3634 -1.0232 -0.0948 31 1 -0.3634 0.4295 0.9336 32 1 -0.3633 0.5937 -0.8388 33 1 3.8731 3.8585 -0.4865 34 1 2.3487 3.6598 0.4107 35 1 3.7118 4.5305 1.1539 36 1 4.5619 2.8363 3.9466 37 1 4.4094 4.2518 2.8573 38 1 6.8583 3.1323 4.2083 39 1 6.5051 4.8140 3.7218 40 1 7.1918 5.6352 1.7760 41 1 8.3327 4.6985 0.7813 42 1 9.6107 6.8219 1.8393 43 1 11.8854 9.2422 2.1677 44 1 5.9697 3.9409 0.5224 45 1 6.8283 2.3704 0.4835 46 1 2.4133 2.7824 -1.6198 47 1 1.2312 -0.0448 -2.2866 48 1 1.5356 1.3156 -3.4940 49 1 4.0040 1.2845 -2.9082 50 1 3.7010 -0.0759 -1.7005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318400034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:12 Heat of formation + Delta-G solvation = -88.369584 kcal Electronic energy + Delta-G solvation = -30203.926049 eV Core-core repulsion = 26039.017365 eV Total energy + Delta-G solvation = -4164.908684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69685 -40.59757 -39.55013 -38.65102 -36.95607 -36.30026 -35.81719 -33.32285 -32.59521 -30.43745 -29.39323 -28.32306 -27.66113 -26.93823 -25.94089 -23.41484 -22.84570 -22.33697 -21.58685 -20.93449 -20.22310 -19.80045 -18.49275 -17.95817 -17.73598 -17.64636 -17.08822 -16.68122 -16.50200 -16.20685 -16.00286 -15.66604 -15.45687 -15.39896 -14.80798 -14.69368 -14.52106 -14.28247 -14.00923 -13.78159 -13.72757 -13.57302 -13.31599 -13.29379 -12.92766 -12.68906 -12.61342 -12.53519 -12.39889 -12.34125 -12.28172 -12.24626 -12.11550 -11.72020 -11.64293 -11.49367 -11.30416 -10.81749 -10.43256 -10.32422 -9.99119 -9.72433 -9.22330 -8.45823 -5.93880 1.36493 1.41756 1.46184 1.55674 1.63686 2.07337 2.29355 2.73213 2.77230 2.97550 3.21011 3.34646 3.46039 3.57838 3.69405 3.71659 3.86005 4.00341 4.14093 4.16640 4.19956 4.23990 4.28583 4.33974 4.37825 4.43508 4.51870 4.53535 4.57146 4.64431 4.65657 4.77628 4.81144 4.86624 4.91691 4.94648 4.99985 5.01413 5.17434 5.18460 5.30496 5.41549 5.42484 5.87181 5.99826 6.04125 6.11102 6.34617 6.62646 7.09375 7.14922 7.58392 8.15060 8.71788 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.001989 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.533588 B =14074.230811 C =14506.507748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.106 3.894 4 H 0.122 0.878 5 C 0.513 3.487 6 O -0.576 6.576 7 N -0.594 5.594 8 C 0.058 3.942 9 C 0.139 3.861 10 H 0.083 0.917 11 C -0.137 4.137 12 C 0.062 3.938 13 N -0.531 5.531 14 C 0.057 3.943 15 C 0.440 3.560 16 O -0.618 6.618 17 N -0.575 5.575 18 C -0.330 4.330 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.270 1.270 26 C 0.045 3.955 27 C -0.177 4.177 28 C -0.151 4.151 29 C -0.186 4.186 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.150 0.850 47 H 0.095 0.905 48 H 0.117 0.883 49 H 0.106 0.894 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.745 -6.321 -12.375 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.308 6.308 3 C 0.045 3.955 4 H 0.140 0.860 5 C 0.301 3.699 6 O -0.455 6.455 7 N -0.327 5.327 8 C -0.083 4.083 9 C 0.034 3.966 10 H 0.101 0.899 11 C -0.176 4.176 12 C -0.066 4.066 13 N -0.256 5.256 14 C -0.074 4.074 15 C 0.227 3.773 16 O -0.504 6.504 17 N -0.213 5.213 18 C -0.460 4.460 19 H 0.094 0.906 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.083 4.083 27 C -0.196 4.196 28 C -0.188 4.188 29 C -0.223 4.223 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.167 0.833 47 H 0.113 0.887 48 H 0.136 0.864 49 H 0.124 0.876 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.817 -7.724 -11.488 29.294 hybrid contribution 0.454 1.070 0.398 1.229 sum -25.363 -6.654 -11.090 28.470 Atomic orbital electron populations 1.23126 0.78654 1.04222 1.01497 1.88006 1.21905 1.26133 1.94765 1.21476 0.92753 0.87141 0.94117 0.86046 1.21076 0.85875 0.82922 0.80008 1.90702 1.69103 1.33085 1.52561 1.47646 1.25128 1.08629 1.51266 1.22316 1.01458 0.84483 1.00060 1.21913 0.83954 1.00217 0.90528 0.89868 1.23090 0.96227 1.00251 0.98044 1.22537 0.91312 1.00073 0.92715 1.63039 1.29334 1.29360 1.03857 1.21924 0.95231 0.92046 0.98205 1.20843 0.85926 0.82195 0.88322 1.90505 1.73208 1.50872 1.35773 1.41914 1.29952 1.22574 1.26816 1.19656 1.10306 1.08264 1.07770 0.90593 1.25996 1.00847 0.95245 0.99184 1.69666 1.41548 1.14664 1.30200 0.84901 0.77636 0.78137 0.77839 1.20048 1.19671 1.19482 1.23276 0.91579 0.99833 0.93627 1.22905 1.06780 0.99574 0.90293 1.23017 0.95746 1.01679 0.98356 1.22855 0.94160 1.01543 1.03726 0.88704 0.93125 0.91344 0.90263 0.88207 0.89702 0.90304 0.88351 0.92807 0.93365 0.90378 0.87305 0.76942 0.91330 0.90253 0.90527 0.83268 0.88694 0.86434 0.87584 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.99 113.37 1.13 1.35 16 2 O -0.39 -7.61 8.58 -129.99 -1.12 -8.73 16 3 C 0.11 1.61 2.16 29.85 0.06 1.67 16 4 H 0.12 1.02 6.74 -2.39 -0.02 1.00 16 5 C 0.51 11.87 6.79 87.66 0.60 12.47 16 6 O -0.58 -19.89 15.89 15.97 0.25 -19.63 16 7 N -0.59 -10.87 2.91 -814.87 -2.37 -13.24 16 8 C 0.06 0.49 7.66 127.77 0.98 1.47 16 9 C 0.14 3.35 3.45 46.38 0.16 3.51 16 10 H 0.08 2.61 7.01 -2.39 -0.02 2.59 16 11 C -0.14 -3.11 6.50 31.78 0.21 -2.90 16 12 C 0.06 1.96 5.65 86.65 0.49 2.45 16 13 N -0.53 -17.51 4.85 -890.07 -4.32 -21.83 16 14 C 0.06 1.94 5.03 85.56 0.43 2.37 16 15 C 0.44 21.05 7.43 87.66 0.65 21.70 16 16 O -0.62 -34.94 15.12 -3.08 -0.05 -34.99 16 17 N -0.57 -29.42 5.29 -306.98 -1.62 -31.04 16 18 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 22 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C 0.04 1.10 6.25 86.77 0.54 1.64 16 27 C -0.18 -1.94 4.89 -10.79 -0.05 -1.99 16 28 C -0.15 -1.63 9.51 30.62 0.29 -1.34 16 29 C -0.19 -2.91 9.84 30.62 0.30 -2.60 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.40 7.60 -2.39 -0.02 0.38 16 33 H 0.08 0.48 7.54 -2.38 -0.02 0.46 16 34 H 0.10 0.31 6.00 -2.39 -0.01 0.30 16 35 H 0.08 0.65 6.32 -2.39 -0.02 0.64 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 1.69 6.31 -2.39 -0.02 1.68 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.61 7.31 -2.39 -0.02 1.59 16 40 H 0.08 2.21 7.96 -2.39 -0.02 2.19 16 41 H 0.11 3.25 8.07 -2.39 -0.02 3.23 16 42 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 43 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.08 1.47 6.72 -2.39 -0.02 1.45 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.15 0.73 6.61 -2.39 -0.02 0.72 16 47 H 0.09 1.20 6.29 -2.38 -0.01 1.18 16 48 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -80.71 395.86 0.39 -80.33 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.23 Total: 31.41 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 7.07 Total: 21.51 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -8.03 Total: -115.12 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -0.91 Total: -63.35 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -80.71 0.39 -80.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318400034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.041 kcal (2) G-P(sol) polarization free energy of solvation -80.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds