Wall clock time and date at job start Sat Apr 11 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99980 * 2 1 4 4 C 1.53002 * 109.47393 * 293.95541 * 3 2 1 5 5 N 1.46496 * 109.47246 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00306 * 270.00091 * 5 4 3 7 7 C 1.34777 * 119.99763 * 89.99901 * 5 4 3 8 8 O 1.21280 * 120.00368 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.99875 * 179.97438 * 7 5 4 10 10 H 1.09000 * 110.66409 * 56.78863 * 9 7 5 11 11 C 1.55969 * 110.37128 * 293.24202 * 9 7 5 12 12 C 1.55823 * 102.34517 * 240.97298 * 11 9 7 13 13 H 1.09002 * 115.39002 * 158.95234 * 12 11 9 14 14 C 1.55824 * 105.97742 * 287.96759 * 12 11 9 15 15 C 1.55976 * 102.85946 * 73.45374 * 14 12 11 16 16 C 1.55821 * 102.34463 * 359.16644 * 15 14 12 17 17 H 1.09001 * 115.38885 * 158.95617 * 16 15 14 18 18 O 1.46529 * 101.24592 * 33.25744 * 16 15 14 19 19 C 1.46896 * 110.99968 * 123.95599 * 2 1 3 20 20 C 1.50700 * 109.47272 * 66.04345 * 19 2 1 21 21 O 1.21296 * 119.99723 * 359.97438 * 20 19 2 22 22 N 1.34777 * 120.00036 * 179.97438 * 20 19 2 23 23 C 1.37100 * 119.99893 * 180.02562 * 22 20 19 24 24 H 1.08001 * 119.99940 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99910 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99976 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99778 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47538 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47227 * 119.99516 * 27 25 23 30 30 H 1.48505 * 109.47160 * 239.99654 * 27 25 23 31 31 H 1.08999 * 109.47185 * 59.99709 * 1 2 3 32 32 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46816 * 300.00166 * 1 2 3 34 34 H 1.09000 * 109.47321 * 173.95422 * 3 2 1 35 35 H 1.09003 * 109.47148 * 53.95771 * 3 2 1 36 36 H 1.09000 * 109.46984 * 59.99674 * 4 3 2 37 37 H 1.09003 * 109.47161 * 300.00221 * 4 3 2 38 38 H 1.08997 * 109.46753 * 269.99787 * 6 5 4 39 39 H 1.09002 * 109.46879 * 29.99798 * 6 5 4 40 40 H 1.08999 * 109.47302 * 149.99886 * 6 5 4 41 41 H 1.08999 * 110.23655 * 123.12290 * 11 9 7 42 42 H 1.09000 * 111.68321 * 359.48116 * 11 9 7 43 43 H 1.08999 * 110.74770 * 191.19244 * 14 12 11 44 44 H 1.08993 * 110.74881 * 314.55142 * 14 12 11 45 45 H 1.08992 * 110.23444 * 241.30927 * 15 14 12 46 46 H 1.09000 * 111.67973 * 117.67088 * 15 14 12 47 47 H 1.09004 * 109.47021 * 186.04482 * 19 2 1 48 48 H 1.08999 * 109.47253 * 306.04367 * 19 2 1 49 49 H 0.96993 * 119.99907 * 0.02562 * 22 20 19 50 50 H 0.96995 * 120.00059 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 7 2.1560 3.4254 -1.3180 6 6 1.3356 4.5244 -0.8028 7 6 3.3933 3.6727 -1.7916 8 8 4.0723 2.7630 -2.2184 9 6 3.9326 5.0799 -1.7918 10 1 3.9168 5.4981 -0.7854 11 6 3.1255 5.9705 -2.7858 12 6 4.2218 6.4159 -3.7997 13 1 3.8537 6.7450 -4.7714 14 6 5.1157 7.4425 -3.0413 15 6 5.9300 6.5390 -2.0648 16 6 5.3738 5.1186 -2.3831 17 1 6.0193 4.2887 -2.0956 18 8 5.0917 5.2368 -3.8161 19 6 1.9955 -0.7660 1.1375 20 6 1.6369 -2.2204 0.9728 21 8 1.0045 -2.5831 0.0033 22 7 2.0189 -3.1182 1.9027 23 6 1.6931 -4.4414 1.7525 24 1 1.1308 -4.7644 0.8889 25 6 2.0864 -5.3668 2.7115 26 7 2.7710 -4.9738 3.7620 27 14 1.6432 -7.1698 2.5065 28 1 0.8758 -7.3510 1.2481 29 1 2.8854 -7.9817 2.4504 30 1 0.8155 -7.6101 3.6582 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.0798 1.3445 0.1082 35 1 1.5612 1.9274 0.8310 36 1 0.5472 2.0845 -1.4265 37 1 2.0658 1.5016 -2.1492 38 1 0.7428 4.9465 -1.6143 39 1 0.6711 4.1481 -0.0250 40 1 1.9825 5.2963 -0.3860 41 1 2.7075 6.8324 -2.2657 42 1 2.3417 5.4042 -3.2887 43 1 5.7879 7.9528 -3.7311 44 1 4.5025 8.1598 -2.4961 45 1 5.7182 6.8140 -1.0316 46 1 6.9998 6.5890 -2.2673 47 1 3.0798 -0.6611 1.1755 48 1 1.5612 -0.3873 2.0628 49 1 2.5242 -2.8280 2.6781 50 1 3.0459 -5.6199 4.4312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320049338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:15 Heat of formation + Delta-G solvation = -84.371616 kcal Electronic energy + Delta-G solvation = -29859.182760 eV Core-core repulsion = 25694.447441 eV Total energy + Delta-G solvation = -4164.735319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47748 -39.47478 -38.52300 -36.71223 -35.44402 -33.81846 -32.74978 -31.56516 -31.20297 -30.11835 -29.57463 -27.73606 -26.89599 -25.47942 -24.29880 -23.06135 -22.01849 -21.14370 -20.58882 -19.31425 -19.05458 -17.80947 -17.57569 -17.10562 -16.63217 -16.07478 -15.70733 -15.55146 -15.11453 -14.98498 -14.64494 -14.52114 -14.21545 -13.92743 -13.58528 -13.45339 -13.32850 -13.21812 -13.00791 -12.93298 -12.55931 -12.26052 -12.07932 -12.06152 -12.00014 -11.83608 -11.50276 -11.47504 -11.38052 -11.27220 -11.23952 -10.95102 -10.91404 -10.77020 -10.31333 -10.28268 -10.19194 -9.80933 -9.45282 -8.93043 -8.38339 -7.94189 -7.82008 -6.38333 -3.78852 2.45925 2.69461 3.18914 3.29219 3.36762 3.43644 3.94502 3.98051 4.03119 4.11559 4.28327 4.31539 4.39214 4.43192 4.58995 4.73133 4.73456 4.83082 4.91404 4.93854 5.02592 5.06487 5.14024 5.23282 5.25856 5.29269 5.35051 5.38768 5.48011 5.54179 5.55041 5.62675 5.68096 5.70481 5.71032 5.85167 5.93576 6.00514 6.06992 6.20282 6.30135 6.34942 6.55926 7.15410 7.28611 7.42622 7.58923 8.03089 8.10452 8.65795 9.21920 9.58445 10.10468 10.79637 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.001863 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.854753 B =15023.532160 C =15495.234798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.044 3.956 4 C 0.119 3.881 5 N -0.617 5.617 6 C 0.078 3.922 7 C 0.520 3.480 8 O -0.520 6.520 9 C -0.139 4.139 10 H 0.108 0.892 11 C -0.134 4.134 12 C 0.057 3.943 13 H 0.130 0.870 14 C -0.148 4.148 15 C -0.149 4.149 16 C 0.088 3.912 17 H 0.137 0.863 18 O -0.363 6.363 19 C 0.048 3.952 20 C 0.445 3.555 21 O -0.576 6.576 22 N -0.565 5.565 23 C -0.297 4.297 24 H 0.104 0.896 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 30.224 -7.163 31.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.240 5.240 3 C -0.085 4.085 4 C -0.004 4.004 5 N -0.352 5.352 6 C -0.065 4.065 7 C 0.308 3.692 8 O -0.395 6.395 9 C -0.161 4.161 10 H 0.126 0.874 11 C -0.172 4.172 12 C -0.001 4.001 13 H 0.147 0.853 14 C -0.186 4.186 15 C -0.187 4.187 16 C 0.029 3.971 17 H 0.154 0.846 18 O -0.281 6.281 19 C -0.083 4.083 20 C 0.231 3.769 21 O -0.460 6.460 22 N -0.202 5.202 23 C -0.426 4.426 24 H 0.122 0.878 25 C -0.181 4.181 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.093 28.986 -8.522 30.233 hybrid contribution -0.310 -0.104 1.644 1.676 sum 0.783 28.882 -6.879 29.701 Atomic orbital electron populations 1.22598 0.86859 1.04608 0.98716 1.61448 1.08538 1.10970 1.43034 1.22425 1.00792 0.88993 0.96291 1.21472 0.98878 0.80784 0.99229 1.47831 1.15841 1.08581 1.62904 1.21842 0.95623 0.89803 0.99272 1.20368 0.81142 0.90504 0.77212 1.90762 1.57222 1.46330 1.45195 1.23256 0.97612 0.93799 1.01429 0.87427 1.23426 0.98205 0.99162 0.96451 1.24703 0.90214 0.86379 0.98764 0.85267 1.23421 0.98730 0.97848 0.98594 1.23435 1.00789 0.94628 0.99835 1.24513 0.93653 0.97837 0.81061 0.84557 1.90181 1.67165 1.46802 1.23952 1.21852 1.00734 0.94141 0.91619 1.19725 0.85381 0.86624 0.85194 1.90483 1.43858 1.80143 1.31560 1.41870 1.49495 1.07366 1.21489 1.19754 1.32770 0.82271 1.07835 0.87843 1.25262 0.96895 1.00568 0.95349 1.69620 1.38206 1.35623 1.10973 0.85798 0.78189 0.81964 0.78376 1.19218 1.20764 1.20834 0.92168 0.88462 0.96846 0.90656 0.95351 0.90410 0.88654 0.92456 0.90924 0.91153 0.89719 0.90100 0.90727 0.90447 0.90516 0.90154 0.89409 0.93547 0.77519 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.96 60.07 0.54 0.86 16 2 N -0.52 -9.04 4.50 -244.37 -1.10 -10.14 16 3 C 0.04 0.62 5.28 -3.82 -0.02 0.60 16 4 C 0.12 1.49 5.33 -4.04 -0.02 1.47 16 5 N -0.62 -6.30 2.87 -181.57 -0.52 -6.82 16 6 C 0.08 0.46 9.31 59.85 0.56 1.02 16 7 C 0.52 6.21 6.90 -10.99 -0.08 6.14 16 8 O -0.52 -8.72 15.49 5.56 0.09 -8.63 16 9 C -0.14 -1.12 1.96 -88.68 -0.17 -1.29 16 10 H 0.11 0.60 6.97 -51.93 -0.36 0.24 16 11 C -0.13 -0.82 4.97 -23.64 -0.12 -0.94 16 12 C 0.06 0.40 5.66 -23.72 -0.13 0.27 16 13 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 14 C -0.15 -0.78 6.56 -23.63 -0.16 -0.93 16 15 C -0.15 -0.91 6.61 -23.63 -0.16 -1.07 16 16 C 0.09 0.81 4.55 -23.72 -0.11 0.70 16 17 H 0.14 1.42 7.77 -51.93 -0.40 1.02 16 18 O -0.36 -4.15 11.63 -35.23 -0.41 -4.56 16 19 C 0.05 0.90 5.45 -4.98 -0.03 0.88 16 20 C 0.45 10.83 7.48 -10.99 -0.08 10.75 16 21 O -0.58 -15.86 13.91 5.54 0.08 -15.78 16 22 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 23 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 24 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 25 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 26 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 27 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 31 H 0.06 0.83 6.47 -51.93 -0.34 0.50 16 32 H 0.10 1.94 5.82 -51.93 -0.30 1.63 16 33 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 35 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.08 0.85 6.48 -51.93 -0.34 0.51 16 37 H 0.10 1.48 7.42 -51.93 -0.39 1.09 16 38 H 0.06 0.27 7.96 -51.93 -0.41 -0.14 16 39 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 40 H 0.07 0.29 6.27 -51.93 -0.33 -0.04 16 41 H 0.08 0.29 7.84 -51.93 -0.41 -0.12 16 42 H 0.08 0.58 7.58 -51.93 -0.39 0.18 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.27 7.84 -51.93 -0.41 -0.14 16 45 H 0.08 0.35 7.84 -51.93 -0.41 -0.06 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 48 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 49 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -35.64 394.18 -8.59 -44.23 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.09 Total: 8.00 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -0.22 Total: 10.35 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.96 Total: -55.93 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.25 Total: -28.97 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.64 -8.59 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320049338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.137 kcal (2) G-P(sol) polarization free energy of solvation -35.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds