Wall clock time and date at job start Sat Apr 11 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99980 * 2 1 4 4 C 1.53002 * 109.47393 * 293.95541 * 3 2 1 5 5 N 1.46496 * 109.47246 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00306 * 270.00091 * 5 4 3 7 7 C 1.34777 * 119.99763 * 89.99901 * 5 4 3 8 8 O 1.21280 * 120.00368 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.99875 * 179.97438 * 7 5 4 10 10 H 1.09000 * 110.66409 * 56.78863 * 9 7 5 11 11 C 1.55969 * 110.37128 * 293.24202 * 9 7 5 12 12 C 1.55823 * 102.34517 * 240.97298 * 11 9 7 13 13 H 1.09002 * 115.39002 * 158.95234 * 12 11 9 14 14 C 1.55824 * 105.97742 * 287.96759 * 12 11 9 15 15 C 1.55976 * 102.85946 * 73.45374 * 14 12 11 16 16 C 1.55821 * 102.34463 * 359.16644 * 15 14 12 17 17 H 1.09001 * 115.38885 * 158.95617 * 16 15 14 18 18 O 1.46529 * 101.24592 * 33.25744 * 16 15 14 19 19 C 1.46896 * 110.99968 * 123.95599 * 2 1 3 20 20 C 1.50700 * 109.47272 * 66.04345 * 19 2 1 21 21 O 1.21296 * 119.99723 * 359.97438 * 20 19 2 22 22 N 1.34777 * 120.00036 * 179.97438 * 20 19 2 23 23 C 1.37100 * 119.99893 * 180.02562 * 22 20 19 24 24 H 1.08001 * 119.99940 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99910 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99976 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99778 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47538 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47227 * 119.99516 * 27 25 23 30 30 H 1.48505 * 109.47160 * 239.99654 * 27 25 23 31 31 H 1.08999 * 109.47185 * 59.99709 * 1 2 3 32 32 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46816 * 300.00166 * 1 2 3 34 34 H 1.09000 * 109.47321 * 173.95422 * 3 2 1 35 35 H 1.09003 * 109.47148 * 53.95771 * 3 2 1 36 36 H 1.09000 * 109.46984 * 59.99674 * 4 3 2 37 37 H 1.09003 * 109.47161 * 300.00221 * 4 3 2 38 38 H 1.08997 * 109.46753 * 269.99787 * 6 5 4 39 39 H 1.09002 * 109.46879 * 29.99798 * 6 5 4 40 40 H 1.08999 * 109.47302 * 149.99886 * 6 5 4 41 41 H 1.08999 * 110.23655 * 123.12290 * 11 9 7 42 42 H 1.09000 * 111.68321 * 359.48116 * 11 9 7 43 43 H 1.08999 * 110.74770 * 191.19244 * 14 12 11 44 44 H 1.08993 * 110.74881 * 314.55142 * 14 12 11 45 45 H 1.08992 * 110.23444 * 241.30927 * 15 14 12 46 46 H 1.09000 * 111.67973 * 117.67088 * 15 14 12 47 47 H 1.09004 * 109.47021 * 186.04482 * 19 2 1 48 48 H 1.08999 * 109.47253 * 306.04367 * 19 2 1 49 49 H 0.96993 * 119.99907 * 0.02562 * 22 20 19 50 50 H 0.96995 * 120.00059 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 7 2.1560 3.4254 -1.3180 6 6 1.3356 4.5244 -0.8028 7 6 3.3933 3.6727 -1.7916 8 8 4.0723 2.7630 -2.2184 9 6 3.9326 5.0799 -1.7918 10 1 3.9168 5.4981 -0.7854 11 6 3.1255 5.9705 -2.7858 12 6 4.2218 6.4159 -3.7997 13 1 3.8537 6.7450 -4.7714 14 6 5.1157 7.4425 -3.0413 15 6 5.9300 6.5390 -2.0648 16 6 5.3738 5.1186 -2.3831 17 1 6.0193 4.2887 -2.0956 18 8 5.0917 5.2368 -3.8161 19 6 1.9955 -0.7660 1.1375 20 6 1.6369 -2.2204 0.9728 21 8 1.0045 -2.5831 0.0033 22 7 2.0189 -3.1182 1.9027 23 6 1.6931 -4.4414 1.7525 24 1 1.1308 -4.7644 0.8889 25 6 2.0864 -5.3668 2.7115 26 7 2.7710 -4.9738 3.7620 27 14 1.6432 -7.1698 2.5065 28 1 0.8758 -7.3510 1.2481 29 1 2.8854 -7.9817 2.4504 30 1 0.8155 -7.6101 3.6582 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.0798 1.3445 0.1082 35 1 1.5612 1.9274 0.8310 36 1 0.5472 2.0845 -1.4265 37 1 2.0658 1.5016 -2.1492 38 1 0.7428 4.9465 -1.6143 39 1 0.6711 4.1481 -0.0250 40 1 1.9825 5.2963 -0.3860 41 1 2.7075 6.8324 -2.2657 42 1 2.3417 5.4042 -3.2887 43 1 5.7879 7.9528 -3.7311 44 1 4.5025 8.1598 -2.4961 45 1 5.7182 6.8140 -1.0316 46 1 6.9998 6.5890 -2.2673 47 1 3.0798 -0.6611 1.1755 48 1 1.5612 -0.3873 2.0628 49 1 2.5242 -2.8280 2.6781 50 1 3.0459 -5.6199 4.4312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320049338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:14 Heat of formation + Delta-G solvation = -112.065296 kcal Electronic energy + Delta-G solvation = -29860.383648 eV Core-core repulsion = 25694.447441 eV Total energy + Delta-G solvation = -4165.936207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12998 -40.53282 -40.10559 -38.11863 -36.50355 -35.84226 -33.46253 -33.29236 -32.19204 -30.70214 -30.53351 -29.15680 -27.60657 -27.03659 -25.76028 -23.86071 -22.71452 -22.13165 -21.20662 -21.02496 -20.04325 -19.84940 -18.30094 -17.92460 -17.76886 -17.39684 -16.71298 -16.58631 -16.38164 -16.25044 -15.92963 -15.75923 -15.39721 -15.17933 -14.97146 -14.79653 -14.20692 -14.04456 -13.99300 -13.78164 -13.54836 -13.47389 -13.20762 -13.10825 -12.99939 -12.71111 -12.60806 -12.54252 -12.50442 -12.42762 -12.40939 -12.12270 -12.02480 -11.90635 -11.82676 -11.48071 -11.45247 -10.91453 -10.67427 -10.34953 -10.01599 -9.72082 -9.22469 -8.47675 -5.96388 1.35497 1.40503 1.55020 1.59759 1.88330 2.03101 2.28484 2.81317 2.91747 3.18738 3.37163 3.40720 3.51151 3.72857 3.80038 3.93625 3.96881 4.06806 4.10089 4.19660 4.27112 4.28545 4.34004 4.40005 4.43956 4.47469 4.50093 4.59072 4.61652 4.63996 4.71226 4.81225 4.85569 4.93984 4.95776 5.00489 5.02088 5.11785 5.17079 5.20189 5.25283 5.40218 5.48236 5.68338 5.83951 6.04667 6.17344 6.38551 6.59373 7.11804 7.17899 7.54603 8.10604 8.70113 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.001863 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.854753 B =15023.532160 C =15495.234798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.055 3.945 4 C 0.125 3.875 5 N -0.612 5.612 6 C 0.068 3.932 7 C 0.510 3.490 8 O -0.585 6.585 9 C -0.130 4.130 10 H 0.142 0.858 11 C -0.125 4.125 12 C 0.046 3.954 13 H 0.139 0.861 14 C -0.139 4.139 15 C -0.142 4.142 16 C 0.071 3.929 17 H 0.106 0.894 18 O -0.410 6.410 19 C 0.061 3.939 20 C 0.441 3.559 21 O -0.613 6.613 22 N -0.574 5.574 23 C -0.332 4.332 24 H 0.079 0.921 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.274 1.274 29 H -0.272 1.272 30 H -0.269 1.269 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 33.453 -5.681 33.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.073 4.073 4 C 0.001 3.999 5 N -0.345 5.345 6 C -0.073 4.073 7 C 0.300 3.700 8 O -0.464 6.464 9 C -0.151 4.151 10 H 0.160 0.840 11 C -0.163 4.163 12 C -0.011 4.011 13 H 0.157 0.843 14 C -0.177 4.177 15 C -0.179 4.179 16 C 0.013 3.987 17 H 0.124 0.876 18 O -0.330 6.330 19 C -0.071 4.071 20 C 0.229 3.771 21 O -0.499 6.499 22 N -0.212 5.212 23 C -0.461 4.461 24 H 0.097 0.903 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.818 3.182 28 H -0.198 1.198 29 H -0.197 1.197 30 H -0.194 1.194 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.116 0.884 48 H 0.090 0.910 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.060 32.279 -7.008 33.031 hybrid contribution 0.034 -1.079 1.121 1.557 sum -0.026 31.200 -5.887 31.751 Atomic orbital electron populations 1.22482 0.86120 1.02553 1.00982 1.61366 1.09452 1.13119 1.42804 1.22349 0.99689 0.87343 0.97960 1.21249 0.99682 0.81947 0.96988 1.47930 1.15771 1.08634 1.62165 1.22203 0.95925 0.88916 1.00235 1.21211 0.81119 0.91643 0.76050 1.90734 1.59055 1.48530 1.48080 1.23305 0.96669 0.91491 1.03643 0.83996 1.23459 0.97224 0.99818 0.95778 1.25032 0.90396 0.85670 1.00029 0.84337 1.23420 0.98518 0.97457 0.98265 1.23417 1.00544 0.92454 1.01507 1.24562 0.94588 0.98932 0.80612 0.87564 1.90141 1.68452 1.49014 1.25382 1.21694 1.01564 0.90438 0.93364 1.20721 0.83788 0.88689 0.83928 1.90461 1.45156 1.81417 1.32884 1.41935 1.50027 1.07085 1.22147 1.19701 1.34393 0.83988 1.08040 0.90319 1.26063 0.96269 1.04431 0.94677 1.69678 1.38129 1.37145 1.11255 0.84850 0.78237 0.76791 0.78314 1.19840 1.19712 1.19367 0.89912 0.92616 0.94436 0.92399 0.92525 0.88311 0.92668 0.90715 0.89860 0.88516 0.85517 0.91334 0.90834 0.87403 0.88065 0.90758 0.88356 0.90952 0.77067 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 8.96 127.69 1.14 1.97 16 2 N -0.54 -18.82 4.50 -927.04 -4.17 -22.99 16 3 C 0.06 1.48 5.28 86.30 0.46 1.93 16 4 C 0.13 3.04 5.33 86.38 0.46 3.50 16 5 N -0.61 -11.47 2.87 -846.76 -2.43 -13.90 16 6 C 0.07 0.52 9.31 127.77 1.19 1.71 16 7 C 0.51 12.09 6.90 87.66 0.60 12.69 16 8 O -0.58 -20.99 15.49 -3.03 -0.05 -21.03 16 9 C -0.13 -1.83 1.96 -9.53 -0.02 -1.84 16 10 H 0.14 0.97 6.97 -2.39 -0.02 0.96 16 11 C -0.13 -1.14 4.97 32.60 0.16 -0.98 16 12 C 0.05 0.56 5.66 32.55 0.18 0.74 16 13 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 14 C -0.14 -1.03 6.56 32.60 0.21 -0.82 16 15 C -0.14 -1.45 6.61 32.60 0.22 -1.23 16 16 C 0.07 1.33 4.55 32.55 0.15 1.48 16 17 H 0.11 2.51 7.77 -2.39 -0.02 2.49 16 18 O -0.41 -9.71 11.63 -148.98 -1.73 -11.44 16 19 C 0.06 2.27 5.45 85.56 0.47 2.73 16 20 C 0.44 22.05 7.48 87.66 0.66 22.71 16 21 O -0.61 -35.15 13.91 -3.08 -0.04 -35.19 16 22 N -0.57 -30.63 5.29 -306.98 -1.62 -32.25 16 23 C -0.33 -19.39 9.68 84.04 0.81 -18.57 16 24 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 25 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 26 N -0.92 -50.79 13.05 21.66 0.28 -50.51 16 27 Si 0.99 44.02 29.55 68.60 2.03 46.05 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 29 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 30 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 31 H 0.08 2.18 6.47 -2.39 -0.02 2.16 16 32 H 0.06 2.26 5.82 -2.39 -0.01 2.24 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.75 7.93 -2.39 -0.02 1.74 16 35 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.10 1.95 6.48 -2.39 -0.02 1.94 16 37 H 0.05 1.80 7.42 -2.39 -0.02 1.78 16 38 H 0.07 0.37 7.96 -2.39 -0.02 0.35 16 39 H 0.08 0.52 8.07 -2.39 -0.02 0.50 16 40 H 0.10 0.26 6.27 -2.39 -0.01 0.25 16 41 H 0.13 0.11 7.84 -2.39 -0.02 0.09 16 42 H 0.07 0.82 7.58 -2.39 -0.02 0.80 16 43 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.11 0.18 7.84 -2.39 -0.02 0.16 16 45 H 0.10 0.53 7.84 -2.39 -0.02 0.51 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 3.46 7.93 -2.39 -0.02 3.44 16 48 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 49 H 0.40 20.03 7.90 -92.71 -0.73 19.30 16 50 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -84.01 394.18 -0.36 -84.37 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.22 Total: 31.22 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 7.16 Total: 25.68 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -7.94 Total: -119.65 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -1.82 Total: -67.67 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -84.01 -0.36 -84.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320049338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.698 kcal (2) G-P(sol) polarization free energy of solvation -84.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds