Wall clock time and date at job start Sat Apr 11 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00230 * 2 1 4 4 O 1.21277 * 120.00568 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99294 * 0.02562 * 3 2 1 6 6 C 1.53007 * 109.46765 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.57252 * 305.15922 * 6 5 3 8 8 C 1.53175 * 109.52392 * 185.00158 * 6 5 3 9 9 C 1.53176 * 109.03666 * 183.11464 * 8 6 5 10 10 C 1.53089 * 109.16219 * 56.97677 * 9 8 6 11 11 O 1.42897 * 109.41656 * 302.39053 * 10 9 8 12 12 C 1.42898 * 114.10001 * 61.16248 * 11 10 9 13 13 C 1.46503 * 120.00448 * 180.02562 * 2 1 3 14 14 C 1.53941 * 113.73072 * 38.75720 * 13 2 1 15 15 N 1.48192 * 86.09954 * 221.96086 * 14 13 2 16 16 C 1.46903 * 111.06751 * 137.52071 * 15 14 13 17 17 C 1.50704 * 109.46883 * 90.56999 * 16 15 14 18 18 O 1.21289 * 119.99930 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99916 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00044 * 179.97438 * 19 17 16 21 21 H 1.08006 * 120.00210 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00209 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99773 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99945 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47436 * 90.00209 * 24 22 20 26 26 H 1.48504 * 109.46861 * 210.00049 * 24 22 20 27 27 H 1.48494 * 109.47140 * 329.99872 * 24 22 20 28 28 C 1.47961 * 90.79868 * 24.60277 * 15 14 13 29 29 H 1.08997 * 109.47603 * 89.99215 * 1 2 3 30 30 H 1.09005 * 109.47149 * 209.99467 * 1 2 3 31 31 H 1.09001 * 109.47258 * 329.98957 * 1 2 3 32 32 H 1.09000 * 109.47280 * 59.99783 * 5 3 2 33 33 H 1.08997 * 109.47412 * 299.98913 * 5 3 2 34 34 H 1.08997 * 109.54332 * 63.23916 * 8 6 5 35 35 H 1.09004 * 109.53853 * 302.98145 * 8 6 5 36 36 H 1.08997 * 109.51782 * 176.88435 * 9 8 6 37 37 H 1.08995 * 109.52112 * 297.07021 * 9 8 6 38 38 H 1.09002 * 109.47970 * 62.37821 * 10 9 8 39 39 H 1.09001 * 109.47923 * 182.39066 * 10 9 8 40 40 H 1.09006 * 109.48424 * 58.82186 * 12 11 10 41 41 H 1.09002 * 109.48282 * 178.85030 * 12 11 10 42 42 H 1.08993 * 112.94153 * 170.33030 * 13 2 1 43 43 H 1.08995 * 113.75948 * 336.24506 * 14 13 2 44 44 H 1.08998 * 113.75433 * 107.61149 * 14 13 2 45 45 H 1.09007 * 109.47131 * 210.56352 * 16 15 14 46 46 H 1.08993 * 109.47067 * 330.57028 * 16 15 14 47 47 H 0.97000 * 120.00308 * 359.97438 * 19 17 16 48 48 H 0.96999 * 119.99823 * 180.02562 * 23 22 20 49 49 H 1.08996 * 113.75757 * 221.08050 * 28 15 14 50 50 H 1.08998 * 113.85857 * 89.73190 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 1 3.0663 3.5281 0.8407 8 6 1.6190 4.9589 0.1276 9 6 2.6171 6.1181 0.0486 10 6 3.3984 6.0200 -1.2642 11 8 4.0567 4.7535 -1.3317 12 6 3.1701 3.6331 -1.3099 13 6 2.1975 -1.2687 -0.0006 14 6 1.5557 -2.3543 -0.8833 15 7 1.8639 -3.2922 0.2219 16 6 0.7407 -4.2068 0.4671 17 6 0.9102 -5.4467 -0.3726 18 8 1.8717 -5.5574 -1.1036 19 7 -0.0067 -6.4327 -0.3112 20 6 0.1472 -7.5604 -1.0755 21 1 1.0034 -7.6590 -1.7264 22 6 -0.7983 -8.5766 -1.0126 23 7 -1.8403 -8.4565 -0.2209 24 14 -0.5882 -10.1135 -2.0534 25 1 0.1864 -11.1256 -1.2911 26 1 -1.9235 -10.6664 -2.3948 27 1 0.1393 -9.7704 -3.3016 28 6 1.8625 -2.1780 1.1955 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 0.7589 2.5298 0.8908 33 1 0.7584 2.5303 -0.8892 34 1 1.0984 4.9903 1.0847 35 1 0.8969 5.0435 -0.6846 36 1 2.0787 7.0652 0.0822 37 1 3.3086 6.0612 0.8892 38 1 2.7110 6.1177 -2.1045 39 1 4.1397 6.8180 -1.3065 40 1 2.4796 3.6994 -2.1508 41 1 3.7470 2.7114 -1.3851 42 1 3.2668 -1.1417 -0.1691 43 1 0.4886 -2.2093 -1.0515 44 1 2.1083 -2.5579 -1.8004 45 1 0.7199 -4.4822 1.5216 46 1 -0.1942 -3.7134 0.2018 47 1 -0.7754 -6.3444 0.2737 48 1 -2.5002 -9.1661 -0.1767 49 1 2.6597 -2.2410 1.9361 50 1 0.8861 -1.9801 1.6377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324016441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:55 Heat of formation + Delta-G solvation = -108.571739 kcal Electronic energy + Delta-G solvation = -29507.391132 eV Core-core repulsion = 25341.606417 eV Total energy + Delta-G solvation = -4165.784715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86840 -40.79792 -39.90778 -39.28230 -36.13945 -35.82713 -35.38374 -33.30308 -32.99580 -31.43912 -28.78096 -28.00892 -27.25807 -26.96913 -25.93884 -25.15858 -23.54928 -21.40857 -20.99946 -20.82381 -20.01360 -19.77388 -18.28472 -17.79748 -17.51602 -17.40847 -17.06051 -16.75162 -16.54142 -16.29476 -15.99483 -15.68585 -15.62082 -15.44911 -15.02661 -14.83262 -14.29009 -14.11617 -13.95921 -13.71596 -13.61815 -13.51405 -13.48710 -13.43835 -13.09512 -13.02977 -12.79455 -12.65466 -12.42708 -12.13993 -12.11535 -12.10693 -11.90855 -11.86733 -11.70331 -11.50481 -11.24308 -10.72170 -10.38874 -10.36159 -10.00854 -9.71283 -9.66502 -8.46932 -5.95313 1.37357 1.41228 1.53570 1.59281 1.87706 2.06091 2.28995 2.78249 2.99711 3.19368 3.32308 3.44871 3.55485 3.72182 3.78856 3.84214 4.00422 4.05698 4.10409 4.17623 4.23553 4.28470 4.30449 4.36893 4.39946 4.51592 4.56563 4.59018 4.61571 4.69353 4.74177 4.76264 4.78290 4.88090 4.95264 4.98929 5.01013 5.10917 5.13413 5.28654 5.33595 5.40563 5.42934 5.46586 5.85917 6.06106 6.31035 6.39392 6.61263 7.13587 7.16837 7.56930 8.14131 8.70369 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034892 B = 0.001709 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.279270 B =16378.003016 C =16564.640868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.604 5.604 3 C 0.505 3.495 4 O -0.581 6.581 5 C -0.123 4.123 6 C -0.104 4.104 7 H 0.061 0.939 8 C -0.113 4.113 9 C -0.155 4.155 10 C 0.048 3.952 11 O -0.412 6.412 12 C 0.060 3.940 13 C 0.127 3.873 14 C 0.004 3.996 15 N -0.484 5.484 16 C 0.029 3.971 17 C 0.440 3.560 18 O -0.621 6.621 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.275 1.275 28 C 0.002 3.998 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.093 0.907 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 30.442 4.212 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.336 5.336 3 C 0.295 3.705 4 O -0.461 6.461 5 C -0.163 4.163 6 C -0.123 4.123 7 H 0.079 0.921 8 C -0.150 4.150 9 C -0.192 4.192 10 C -0.029 4.029 11 O -0.332 6.332 12 C -0.016 4.016 13 C 0.022 3.978 14 C -0.125 4.125 15 N -0.207 5.207 16 C -0.103 4.103 17 C 0.227 3.773 18 O -0.507 6.507 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.127 4.127 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.128 0.872 46 H 0.107 0.893 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.111 0.889 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.679 29.773 3.708 30.050 hybrid contribution -0.925 -0.929 -0.184 1.324 sum -2.604 28.844 3.524 29.175 Atomic orbital electron populations 1.22162 0.76974 1.05245 1.03546 1.48021 1.08345 1.04640 1.72633 1.21501 0.87849 0.86575 0.74554 1.90693 1.16248 1.87848 1.51261 1.21782 0.98678 0.88645 1.07172 1.21499 0.97016 0.95198 0.98608 0.92066 1.21664 0.97506 0.91871 1.03988 1.22181 0.98882 1.00180 0.97982 1.22821 0.97453 0.85192 0.97394 1.87938 1.35237 1.15254 1.94753 1.22794 0.93402 0.88901 0.96505 1.22709 0.97704 0.81798 0.95638 1.24437 1.01027 0.90638 0.96434 1.68298 1.37768 1.09807 1.04847 1.22330 0.94618 0.92751 1.00617 1.20850 0.83830 0.86274 0.86323 1.90500 1.33526 1.81768 1.44923 1.41920 1.23150 1.16131 1.39988 1.19631 1.08890 0.95940 1.21939 0.90698 1.25984 0.94707 1.01796 0.98577 1.69659 1.11968 1.35677 1.38642 0.84961 0.77935 0.77481 0.78149 1.19770 1.19299 1.20023 1.24480 1.03414 0.88794 0.96055 0.91168 0.90431 0.87425 0.85350 0.86159 0.89583 0.89982 0.88605 0.92214 0.92158 0.88406 0.92482 0.90340 0.88087 0.88832 0.91362 0.87248 0.89334 0.76904 0.91283 0.88863 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 8.83 127.77 1.13 1.69 16 2 N -0.60 -10.66 3.09 -826.82 -2.56 -13.22 16 3 C 0.50 9.96 7.41 87.66 0.65 10.61 16 4 O -0.58 -17.18 13.47 -3.02 -0.04 -17.22 16 5 C -0.12 -1.27 3.73 29.85 0.11 -1.16 16 6 C -0.10 -1.50 2.03 -10.70 -0.02 -1.52 16 7 H 0.06 1.22 7.95 -2.38 -0.02 1.20 16 8 C -0.11 -0.94 5.31 30.71 0.16 -0.78 16 9 C -0.15 -1.53 6.14 30.68 0.19 -1.34 16 10 C 0.05 0.64 6.84 72.01 0.49 1.13 16 11 O -0.41 -9.18 10.76 -148.98 -1.60 -10.79 16 12 C 0.06 1.19 5.84 72.01 0.42 1.61 16 13 C 0.13 3.09 4.39 46.56 0.20 3.30 16 14 C 0.00 0.12 7.41 86.37 0.64 0.76 16 15 N -0.48 -15.67 5.65 -912.15 -5.15 -20.82 16 16 C 0.03 0.95 5.28 85.56 0.45 1.40 16 17 C 0.44 21.14 7.83 87.66 0.69 21.83 16 18 O -0.62 -35.76 16.01 -3.06 -0.05 -35.80 16 19 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 21 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 24 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.00 0.04 7.46 86.41 0.64 0.69 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.69 6.35 -2.38 -0.02 0.68 16 31 H 0.11 0.30 6.44 -2.39 -0.02 0.28 16 32 H 0.13 0.58 7.40 -2.39 -0.02 0.56 16 33 H 0.12 0.69 8.11 -2.39 -0.02 0.67 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 2.07 6.04 -2.39 -0.01 2.05 16 42 H 0.10 3.07 7.22 -2.39 -0.02 3.05 16 43 H 0.09 2.18 6.17 -2.39 -0.01 2.17 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 45 H 0.11 3.18 8.08 -2.38 -0.02 3.16 16 46 H 0.09 2.36 7.39 -2.39 -0.02 2.34 16 47 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 48 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 49 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.10 1.71 6.63 -2.39 -0.02 1.70 16 Total: -1.00 -80.25 394.45 -1.46 -81.70 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.22 Total: 30.97 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 7.04 Total: 19.78 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -9.05 Total: -113.74 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -1.69 Total: -63.81 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -80.25 -1.46 -81.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324016441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.870 kcal (2) G-P(sol) polarization free energy of solvation -80.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds