Wall clock time and date at job start Sat Apr 11 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00163 * 2 1 4 4 C 1.53005 * 109.47311 * 270.00387 * 3 2 1 5 5 N 1.46903 * 109.46680 * 179.97438 * 4 3 2 6 6 C 1.46890 * 111.00143 * 293.95273 * 5 4 3 7 7 C 1.46910 * 110.99410 * 169.99933 * 5 4 3 8 8 C 1.53002 * 117.49656 * 248.74693 * 7 5 4 9 9 C 1.52993 * 117.49600 * 180.08831 * 7 5 4 10 10 C 1.34777 * 119.99809 * 180.02562 * 2 1 3 11 11 O 1.21347 * 120.00019 * 183.62256 * 10 2 1 12 12 C 1.49453 * 119.99893 * 3.61868 * 10 2 1 13 13 O 1.21352 * 120.00147 * 354.16972 * 12 10 2 14 14 N 1.34778 * 120.00056 * 174.44311 * 12 10 2 15 15 C 1.47026 * 125.64737 * 359.69029 * 14 12 10 16 16 C 1.54326 * 107.26483 * 178.84535 * 15 14 12 17 17 C 1.55151 * 103.02512 * 338.14493 * 16 15 14 18 18 O 1.42898 * 111.00471 * 277.23034 * 17 16 15 19 19 C 1.50698 * 111.03788 * 153.39097 * 17 16 15 20 20 H 1.07994 * 120.00175 * 6.33043 * 19 17 16 21 21 C 1.37883 * 119.99659 * 186.32871 * 19 17 16 22 22 N 1.31510 * 120.00125 * 0.02562 * 21 19 17 23 23 Si 1.86809 * 119.99707 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47086 * 90.00228 * 23 21 19 25 25 H 1.48498 * 109.46962 * 210.00415 * 23 21 19 26 26 H 1.48500 * 109.46966 * 330.00142 * 23 21 19 27 27 C 1.47423 * 125.64843 * 179.97438 * 14 12 10 28 28 H 1.09005 * 109.47326 * 263.96607 * 1 2 3 29 29 H 1.09005 * 109.47266 * 23.96588 * 1 2 3 30 30 H 1.08996 * 109.47884 * 143.96523 * 1 2 3 31 31 H 1.09003 * 109.47053 * 30.00244 * 3 2 1 32 32 H 1.09000 * 109.46861 * 150.00261 * 3 2 1 33 33 H 1.09003 * 109.46945 * 299.99923 * 4 3 2 34 34 H 1.08995 * 109.46805 * 60.00126 * 4 3 2 35 35 H 1.08998 * 109.47637 * 60.00558 * 6 5 4 36 36 H 1.09003 * 109.47182 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47168 * 299.99734 * 6 5 4 38 38 H 1.09000 * 115.54811 * 34.41660 * 7 5 4 39 39 H 1.08992 * 117.49796 * 0.02562 * 8 7 5 40 40 H 1.09000 * 117.49302 * 145.02052 * 8 7 5 41 41 H 1.08998 * 117.50077 * 214.98121 * 9 7 5 42 42 H 1.09000 * 117.50298 * 359.97432 * 9 7 5 43 43 H 1.08993 * 109.88511 * 298.39917 * 15 14 12 44 44 H 1.09005 * 109.87669 * 59.55996 * 15 14 12 45 45 H 1.09000 * 110.85371 * 219.66884 * 16 15 14 46 46 H 1.09006 * 110.51544 * 96.45574 * 16 15 14 47 47 H 0.96703 * 114.00390 * 173.65050 * 18 17 16 48 48 H 0.97003 * 119.99540 * 179.97438 * 22 21 19 49 49 H 1.08995 * 110.36927 * 322.93213 * 27 14 12 50 50 H 1.08995 * 110.36577 * 85.14517 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4424 6 6 2.3639 4.0651 -0.8857 7 6 3.6560 3.3199 -2.7930 8 6 5.1637 3.2727 -3.0491 9 6 4.4434 4.6206 -2.9631 10 6 2.1388 -1.1672 -0.0005 11 8 3.3505 -1.1683 0.0659 12 6 1.3937 -2.4602 -0.0828 13 8 0.1809 -2.4652 -0.0424 14 7 2.0690 -3.6211 -0.1963 15 6 3.5315 -3.7592 -0.2570 16 6 3.8454 -5.2670 -0.3554 17 6 2.5641 -5.9290 0.2166 18 8 2.6002 -5.9654 1.6447 19 6 2.3696 -7.3113 -0.3513 20 1 3.1314 -7.7492 -0.9791 21 6 1.2190 -8.0168 -0.0693 22 7 0.2911 -7.4833 0.6948 23 14 0.9782 -9.7305 -0.7727 24 1 1.5292 -10.7352 0.1719 25 1 -0.4710 -9.9835 -0.9748 26 1 1.6851 -9.8351 -2.0745 27 6 1.4633 -4.9621 -0.2860 28 1 -0.3634 -0.1080 1.0220 29 1 -0.3634 0.9391 -0.4174 30 1 -0.3635 -0.8310 -0.6045 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1382 0.5138 33 1 3.0415 0.9508 -1.9564 34 1 1.5001 1.8408 -1.9562 35 1 2.0879 3.8209 0.1401 36 1 2.9312 4.9958 -0.8978 37 1 1.4621 4.1820 -1.4867 38 1 2.9974 3.0200 -3.6081 39 1 5.8071 2.9912 -2.2156 40 1 5.4969 2.9420 -4.0328 41 1 4.3031 5.1763 -3.8903 42 1 4.6127 5.2266 -2.0730 43 1 3.9168 -3.2403 -1.1346 44 1 3.9805 -3.3472 0.6467 45 1 4.7149 -5.5227 0.2502 46 1 3.9989 -5.5583 -1.3945 47 1 1.7813 -6.2807 2.0510 48 1 -0.5185 -7.9795 0.8929 49 1 0.5828 -5.0243 0.3534 50 1 1.1984 -5.1904 -1.3183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326227534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:08 Heat of formation + Delta-G solvation = -58.595401 kcal Electronic energy + Delta-G solvation = -30532.983516 eV Core-core repulsion = 26369.365938 eV Total energy + Delta-G solvation = -4163.617578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54574 -38.99912 -38.36231 -37.25980 -36.07431 -34.53915 -33.99215 -32.25650 -30.22893 -29.69107 -27.89975 -26.89721 -26.72943 -25.50376 -23.80065 -22.59309 -22.48475 -20.99205 -20.65158 -19.67522 -18.85494 -17.27192 -17.06266 -16.80630 -16.64160 -15.99694 -15.56058 -15.32573 -15.09658 -14.86372 -14.75638 -14.47844 -14.20577 -13.83286 -13.25215 -13.14040 -13.05866 -12.94119 -12.87302 -12.78683 -12.33833 -12.26360 -12.20408 -12.10628 -11.66434 -11.62474 -11.50235 -11.10555 -11.05678 -10.89181 -10.80192 -10.70813 -10.52737 -10.51608 -10.47173 -10.21262 -9.37442 -9.01198 -8.83073 -8.69318 -8.60953 -8.37713 -7.89043 -6.30584 -4.39992 1.80218 2.51645 3.19660 3.27325 3.29776 3.41350 3.46920 3.60182 3.84943 4.24756 4.54537 4.60205 4.65332 4.72539 4.78640 4.88454 4.97193 5.03448 5.16589 5.21065 5.25391 5.33383 5.39395 5.49244 5.56175 5.61221 5.63987 5.69415 5.79783 5.83025 5.83814 5.90268 6.02571 6.06987 6.30349 6.38366 6.51660 6.67276 6.73078 6.75626 6.82569 6.85412 7.12008 7.18303 7.30455 7.71443 7.81439 8.00258 8.06817 8.45894 8.64303 9.27648 9.36238 10.76587 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.002349 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.493609 B =11916.545851 C =12459.785902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.118 3.882 4 C 0.046 3.954 5 N -0.511 5.511 6 C 0.021 3.979 7 C 0.003 3.997 8 C -0.161 4.161 9 C -0.175 4.175 10 C 0.509 3.491 11 O -0.513 6.513 12 C 0.508 3.492 13 O -0.533 6.533 14 N -0.573 5.573 15 C 0.111 3.889 16 C -0.121 4.121 17 C 0.248 3.752 18 O -0.581 6.581 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.894 5.894 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.092 3.908 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.381 0.619 48 H 0.270 0.730 49 H 0.091 0.909 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 21.317 -5.038 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.329 5.329 3 C -0.005 4.005 4 C -0.083 4.083 5 N -0.236 5.236 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.199 4.199 9 C -0.213 4.213 10 C 0.292 3.708 11 O -0.388 6.388 12 C 0.291 3.709 13 O -0.413 6.413 14 N -0.305 5.305 15 C -0.012 4.012 16 C -0.159 4.159 17 C 0.208 3.792 18 O -0.389 6.389 19 C -0.574 4.574 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.028 4.028 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.230 0.770 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.552 21.497 -4.685 22.286 hybrid contribution -1.659 -0.896 -0.801 2.048 sum 1.893 20.601 -5.486 21.402 Atomic orbital electron populations 1.22398 0.77670 1.03776 1.03652 1.47635 1.08150 1.04909 1.72230 1.21470 0.98596 0.84119 0.96352 1.22457 0.96745 0.91457 0.97672 1.61663 1.39470 1.02563 1.19872 1.22461 0.95718 0.94695 0.99813 1.22406 0.94881 1.02533 0.90749 1.23091 0.94262 0.99534 1.03019 1.23072 1.04292 0.90779 1.03114 1.20450 0.87567 0.85295 0.77525 1.90731 1.13509 1.87101 1.47410 1.19555 0.87189 0.84207 0.79994 1.90616 1.13179 1.86029 1.51430 1.48687 1.08950 1.06571 1.66275 1.22153 0.79595 0.97818 1.01632 1.22710 0.99768 0.92182 1.01274 1.19634 0.88171 0.91841 0.79564 1.86137 1.42719 1.89294 1.20774 1.21461 1.04135 0.99985 1.31841 0.91389 1.25091 0.95296 0.98655 0.94235 1.69710 1.08706 1.38122 1.36680 0.86390 0.77371 0.83564 0.79509 1.20367 1.21032 1.19685 1.23479 1.00009 0.77525 1.01826 0.92244 0.92253 0.87179 0.90274 0.88625 0.90064 0.94458 0.91026 0.91178 0.95481 0.89308 0.87933 0.88746 0.88752 0.88325 0.91964 0.90932 0.90490 0.90409 0.76961 0.91977 0.89074 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 9.55 59.85 0.57 1.39 16 2 N -0.59 -8.22 2.87 -182.08 -0.52 -8.74 16 3 C 0.12 1.32 5.33 -4.04 -0.02 1.30 16 4 C 0.05 0.48 5.25 -3.82 -0.02 0.46 16 5 N -0.51 -4.87 4.91 -234.88 -1.15 -6.03 16 6 C 0.02 0.16 9.18 60.06 0.55 0.71 16 7 C 0.00 0.03 5.27 -67.71 -0.36 -0.33 16 8 C -0.16 -1.33 10.46 -26.69 -0.28 -1.61 16 9 C -0.18 -1.24 9.73 -26.70 -0.26 -1.50 16 10 C 0.51 8.84 7.69 -11.58 -0.09 8.75 16 11 O -0.51 -9.58 13.72 5.50 0.08 -9.50 16 12 C 0.51 10.15 7.80 -11.58 -0.09 10.06 16 13 O -0.53 -11.16 13.39 5.50 0.07 -11.09 16 14 N -0.57 -12.12 3.33 -171.04 -0.57 -12.69 16 15 C 0.11 2.16 5.50 -3.06 -0.02 2.14 16 16 C -0.12 -2.48 6.13 -24.90 -0.15 -2.63 16 17 C 0.25 5.98 0.87 -89.63 -0.08 5.91 16 18 O -0.58 -14.79 13.16 -35.23 -0.46 -15.25 16 19 C -0.54 -13.75 8.27 -34.44 -0.28 -14.04 16 20 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 22 N -0.89 -23.37 10.69 55.43 0.59 -22.77 16 23 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C 0.09 2.17 5.38 -2.54 -0.01 2.16 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 30 H 0.11 1.60 5.35 -51.94 -0.28 1.33 16 31 H 0.08 0.71 6.48 -51.93 -0.34 0.38 16 32 H 0.10 1.24 7.37 -51.93 -0.38 0.86 16 33 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.07 0.49 6.47 -51.93 -0.34 0.16 16 36 H 0.07 0.46 6.76 -51.93 -0.35 0.11 16 37 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.68 7.26 -51.93 -0.38 0.30 16 43 H 0.06 1.11 7.83 -51.93 -0.41 0.71 16 44 H 0.07 1.44 7.45 -51.93 -0.39 1.06 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 47 H 0.38 9.84 7.56 45.56 0.34 10.19 16 48 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.09 2.37 7.32 -51.93 -0.38 1.99 16 50 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -28.49 397.81 -9.11 -37.60 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.48 Total: 12.92 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -0.63 Total: 14.49 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -1.65 Total: -50.23 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.31 Total: -35.84 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.49 -9.11 -37.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326227534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.994 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds