Wall clock time and date at job start Sat Apr 11 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99764 * 2 1 4 4 C 1.46895 * 111.00308 * 123.95721 * 2 1 3 5 5 H 1.08995 * 109.49677 * 54.93477 * 4 2 1 6 6 C 1.53037 * 109.49936 * 175.00473 * 4 2 1 7 7 C 1.53046 * 109.53609 * 181.31873 * 6 4 2 8 8 C 1.53198 * 109.31129 * 298.62833 * 7 6 4 9 9 N 1.46924 * 108.77168 * 54.63765 * 8 7 6 10 10 C 1.34778 * 120.63132 * 126.41254 * 9 8 7 11 11 O 1.21346 * 120.00249 * 178.30174 * 10 9 8 12 12 C 1.49452 * 119.99450 * 358.30452 * 10 9 8 13 13 O 1.21350 * 120.00665 * 6.04400 * 12 10 9 14 14 N 1.34779 * 119.99558 * 186.04537 * 12 10 9 15 15 C 1.47020 * 125.65294 * 359.68942 * 14 12 10 16 16 C 1.54324 * 107.26894 * 178.84842 * 15 14 12 17 17 C 1.55150 * 103.02537 * 338.14533 * 16 15 14 18 18 O 1.42907 * 111.00388 * 277.23418 * 17 16 15 19 19 C 1.50702 * 111.04437 * 153.39276 * 17 16 15 20 20 H 1.07998 * 120.00010 * 273.02580 * 19 17 16 21 21 C 1.37879 * 119.99816 * 93.02306 * 19 17 16 22 22 N 1.31513 * 119.99726 * 177.36422 * 21 19 17 23 23 Si 1.86802 * 120.00076 * 357.36461 * 21 19 17 24 24 H 1.48499 * 109.47244 * 90.28460 * 23 21 19 25 25 H 1.48500 * 109.46829 * 210.28392 * 23 21 19 26 26 H 1.48498 * 109.47018 * 330.27936 * 23 21 19 27 27 C 1.47427 * 125.64559 * 180.02562 * 14 12 10 28 28 C 1.46923 * 118.74103 * 306.39036 * 9 8 7 29 29 H 1.08998 * 109.47272 * 296.04431 * 1 2 3 30 30 H 1.09000 * 109.47091 * 56.04330 * 1 2 3 31 31 H 1.08999 * 109.46906 * 176.03896 * 1 2 3 32 32 H 1.09005 * 109.46892 * 183.95077 * 3 2 1 33 33 H 1.08997 * 109.47261 * 303.95814 * 3 2 1 34 34 H 1.09002 * 109.46807 * 63.95788 * 3 2 1 35 35 H 1.08997 * 109.46018 * 301.33086 * 6 4 2 36 36 H 1.08992 * 109.46366 * 61.29661 * 6 4 2 37 37 H 1.08994 * 109.49931 * 58.58642 * 7 6 4 38 38 H 1.09007 * 109.49442 * 178.68021 * 7 6 4 39 39 H 1.08996 * 109.58805 * 294.85370 * 8 7 6 40 40 H 1.08994 * 109.70003 * 174.49448 * 8 7 6 41 41 H 1.09001 * 109.88370 * 298.39801 * 15 14 12 42 42 H 1.09007 * 109.88078 * 59.55751 * 15 14 12 43 43 H 1.09004 * 110.85425 * 219.67134 * 16 15 14 44 44 H 1.09005 * 110.66900 * 96.52780 * 16 15 14 45 45 H 0.96701 * 114.00231 * 177.77390 * 18 17 16 46 46 H 0.97003 * 119.99909 * 180.02562 * 22 21 19 47 47 H 1.09004 * 110.36716 * 322.92729 * 27 14 12 48 48 H 1.08994 * 110.36888 * 85.25536 * 27 14 12 49 49 H 1.09004 * 109.58519 * 293.82241 * 28 9 8 50 50 H 1.09003 * 109.59061 * 173.39731 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 1.5748 -1.7714 1.1249 6 6 3.5202 -0.8489 1.0356 7 6 4.0669 -1.6746 2.2025 8 6 3.7073 -0.9859 3.5228 9 7 2.2544 -0.7715 3.5639 10 6 1.5244 -1.2123 4.6076 11 8 0.3299 -1.0020 4.6445 12 6 2.1863 -1.9600 5.7196 13 8 3.3942 -2.0755 5.7386 14 7 1.4416 -2.5061 6.7013 15 6 -0.0233 -2.4371 6.8049 16 6 -0.4308 -3.2249 8.0678 17 6 0.7817 -4.1645 8.3003 18 8 0.6887 -5.3328 7.4825 19 6 0.9074 -4.5358 9.7554 20 1 1.4609 -3.8989 10.4294 21 6 0.3157 -5.6888 10.2262 22 7 0.4687 -6.0399 11.4844 23 14 -0.7032 -6.7521 9.0771 24 1 0.1713 -7.7662 8.4353 25 1 -1.7694 -7.4368 9.8515 26 1 -1.3217 -5.8985 8.0311 27 6 1.9617 -3.2656 7.8529 28 6 1.6124 -0.0671 2.4458 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0710 32 1 3.0827 1.3433 -0.0708 33 1 1.5896 1.9164 -0.8524 34 1 1.7043 1.8723 0.9234 35 1 3.7959 -1.3238 0.0941 36 1 3.9417 0.1556 1.0726 37 1 3.6268 -2.6715 2.1804 38 1 5.1508 -1.7529 2.1163 39 1 4.2202 -0.0262 3.5859 40 1 4.0075 -1.6164 4.3597 41 1 -0.3400 -1.3981 6.8954 42 1 -0.4789 -2.8903 5.9244 43 1 -1.3377 -3.8026 7.8889 44 1 -0.5650 -2.5517 8.9146 45 1 1.4414 -5.9338 7.5681 46 1 0.0528 -6.8512 11.8155 47 1 2.8116 -3.8777 7.5510 48 1 2.2480 -2.5874 8.6566 49 1 1.9544 0.9676 2.4211 50 1 0.5298 -0.0933 2.5706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326529106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:24 Heat of formation + Delta-G solvation = -72.501434 kcal Electronic energy + Delta-G solvation = -31429.556667 eV Core-core repulsion = 27265.336078 eV Total energy + Delta-G solvation = -4164.220589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07107 -39.61788 -38.36364 -37.74702 -36.22868 -34.86902 -32.68982 -32.42760 -30.56219 -30.26126 -28.52505 -28.06794 -26.83374 -25.42850 -24.91124 -23.30886 -22.13176 -21.94102 -20.02647 -19.86296 -19.17411 -17.66627 -17.19237 -17.01103 -16.21031 -15.97494 -15.74839 -15.52297 -15.29301 -15.16619 -14.85410 -14.68100 -14.28631 -14.01475 -13.82936 -13.65199 -13.40337 -13.14751 -13.06189 -12.75002 -12.57610 -12.43298 -12.29529 -12.10412 -12.04033 -11.83740 -11.67121 -11.59320 -11.50612 -11.13210 -10.96698 -10.76319 -10.66284 -10.54319 -10.37006 -10.26731 -9.27205 -9.26772 -8.92073 -8.68640 -8.65973 -8.44888 -8.23991 -6.25826 -4.39338 1.52115 2.30093 3.29224 3.37857 3.42599 3.49691 3.61912 3.69293 4.22447 4.42255 4.42688 4.51854 4.72447 4.79765 4.87476 4.94734 4.96209 5.02354 5.06207 5.14173 5.19445 5.26891 5.32933 5.36671 5.48537 5.54891 5.59615 5.62217 5.65383 5.70362 5.74323 5.78544 5.91769 5.96032 6.05189 6.12298 6.16516 6.33829 6.46813 6.61675 6.62668 6.66781 6.72719 6.97692 7.02589 7.33264 7.52458 7.79463 8.02652 8.12507 8.54957 8.73181 9.33629 10.82953 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.002741 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.262557 B =10212.561831 C =10595.633293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.535 5.535 3 C 0.013 3.987 4 C 0.071 3.929 5 H 0.088 0.912 6 C -0.113 4.113 7 C -0.131 4.131 8 C 0.044 3.956 9 N -0.580 5.580 10 C 0.511 3.489 11 O -0.518 6.518 12 C 0.516 3.484 13 O -0.526 6.526 14 N -0.569 5.569 15 C 0.107 3.893 16 C -0.123 4.123 17 C 0.220 3.780 18 O -0.557 6.557 19 C -0.553 4.553 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.886 5.886 23 Si 0.944 3.056 24 H -0.294 1.294 25 H -0.325 1.325 26 H -0.261 1.261 27 C 0.085 3.915 28 C 0.075 3.925 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.165 0.835 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.268 0.732 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 12.258 -20.937 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.257 5.257 3 C -0.135 4.135 4 C -0.038 4.038 5 H 0.106 0.894 6 C -0.151 4.151 7 C -0.170 4.170 8 C -0.077 4.077 9 N -0.314 5.314 10 C 0.293 3.707 11 O -0.394 6.394 12 C 0.300 3.700 13 O -0.407 6.407 14 N -0.299 5.299 15 C -0.016 4.016 16 C -0.161 4.161 17 C 0.179 3.821 18 O -0.365 6.365 19 C -0.591 4.591 20 H 0.101 0.899 21 C -0.132 4.132 22 N -0.520 5.520 23 Si 0.780 3.220 24 H -0.221 1.221 25 H -0.256 1.256 26 H -0.187 1.187 27 C -0.036 4.036 28 C -0.049 4.049 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.181 0.819 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.219 0.781 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.556 12.292 -21.410 24.943 hybrid contribution -0.278 -0.233 0.273 0.455 sum 3.277 12.059 -21.137 24.555 Atomic orbital electron populations 1.22456 0.87081 1.02696 1.00836 1.62314 1.08190 1.14052 1.41190 1.22528 1.01254 0.88993 1.00707 1.22114 0.96418 0.98108 0.87175 0.89389 1.21642 0.93485 1.00805 0.99197 1.21901 1.01424 0.99586 0.94079 1.23424 0.78159 1.03232 1.02839 1.47853 1.09303 1.55431 1.18811 1.20169 0.86780 0.80274 0.83437 1.90732 1.14418 1.56388 1.77844 1.19614 0.86550 0.80862 0.82971 1.90222 1.13571 1.61559 1.75357 1.48485 1.09209 1.49639 1.22605 1.22301 0.78461 1.00808 0.99986 1.23027 0.99940 0.97686 0.95474 1.20257 0.89604 0.82004 0.90229 1.86302 1.47250 1.34576 1.68349 1.21098 1.36957 1.09830 0.91184 0.89879 1.25144 0.95089 0.97424 0.95588 1.69946 1.42671 1.24437 1.14969 0.85749 0.79046 0.78753 0.78496 1.22136 1.25647 1.18723 1.23374 0.99496 0.94920 0.85794 1.22422 1.00028 0.96092 0.86325 0.95004 0.91179 0.91120 0.90875 0.91304 0.95086 0.90785 0.91694 0.91436 0.90192 0.91937 0.81936 0.91093 0.91143 0.90020 0.89475 0.78125 0.92280 0.90463 0.90081 0.91081 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.31 60.06 0.56 0.70 16 2 N -0.53 -4.58 5.01 -243.04 -1.22 -5.79 16 3 C 0.01 0.09 8.83 60.07 0.53 0.62 16 4 C 0.07 0.67 2.38 -67.59 -0.16 0.51 16 5 H 0.09 0.95 8.13 -51.93 -0.42 0.53 16 6 C -0.11 -0.95 4.92 -26.69 -0.13 -1.08 16 7 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 8 C 0.04 0.50 6.24 -3.71 -0.02 0.47 16 9 N -0.58 -7.47 2.97 -173.27 -0.51 -7.98 16 10 C 0.51 8.08 7.72 -11.58 -0.09 7.99 16 11 O -0.52 -8.98 13.58 5.50 0.07 -8.90 16 12 C 0.52 8.90 7.83 -11.58 -0.09 8.81 16 13 O -0.53 -9.25 13.27 5.50 0.07 -9.17 16 14 N -0.57 -10.32 3.33 -171.01 -0.57 -10.89 16 15 C 0.11 1.89 5.49 -3.07 -0.02 1.87 16 16 C -0.12 -2.39 5.96 -24.90 -0.15 -2.54 16 17 C 0.22 4.68 0.71 -89.61 -0.06 4.61 16 18 O -0.56 -11.78 8.46 -35.23 -0.30 -12.07 16 19 C -0.55 -14.05 8.88 -34.44 -0.31 -14.35 16 20 H 0.08 2.29 8.00 -52.49 -0.42 1.87 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 23 Si 0.94 22.45 24.85 -169.99 -4.22 18.22 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.32 -8.03 7.11 56.52 0.40 -7.62 16 26 H -0.26 -6.14 5.32 56.52 0.30 -5.84 16 27 C 0.09 1.64 6.10 -2.51 -0.02 1.63 16 28 C 0.08 0.82 5.01 -3.71 -0.02 0.80 16 29 H 0.03 0.26 6.57 -51.93 -0.34 -0.08 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.47 6.36 -51.93 -0.33 0.14 16 33 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.03 0.22 6.17 -51.93 -0.32 -0.10 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.50 6.50 -51.93 -0.34 0.16 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.16 2.23 3.76 -57.05 -0.21 2.01 16 41 H 0.07 1.19 7.59 -51.93 -0.39 0.79 16 42 H 0.07 1.27 7.71 -51.93 -0.40 0.87 16 43 H 0.08 1.63 7.02 -51.93 -0.36 1.26 16 44 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 45 H 0.37 7.05 8.42 45.56 0.38 7.43 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 48 H 0.08 1.56 7.98 -51.93 -0.41 1.15 16 49 H 0.07 0.71 6.12 -51.93 -0.32 0.39 16 50 H 0.09 1.14 5.69 -51.93 -0.30 0.85 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -29.79 373.22 -7.73 -37.52 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.22 Total: 7.66 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -0.23 Total: 10.53 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -1.53 Total: -49.41 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.15 Total: -30.15 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.22 Total: 18.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.79 -7.73 -37.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326529106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.980 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds