Wall clock time and date at job start Sat Apr 11 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99681 * 2 1 4 4 C 1.53002 * 109.47549 * 270.00563 * 3 2 1 5 5 H 1.08997 * 109.90819 * 63.89122 * 4 3 2 6 6 C 1.53990 * 109.92181 * 185.00470 * 4 3 2 7 7 C 1.54590 * 105.14326 * 120.57509 * 6 4 3 8 8 C 1.54934 * 102.92222 * 21.95811 * 7 6 4 9 9 N 1.47908 * 109.91281 * 302.59317 * 4 3 2 10 10 C 1.46899 * 111.00344 * 94.80260 * 9 4 3 11 11 C 1.34767 * 120.00086 * 180.02562 * 2 1 3 12 12 O 1.21350 * 120.00022 * 180.59589 * 11 2 1 13 13 C 1.49453 * 120.00156 * 0.59439 * 11 2 1 14 14 O 1.21352 * 119.99998 * 355.45237 * 13 11 2 15 15 N 1.34778 * 120.00079 * 175.72751 * 13 11 2 16 16 C 1.47021 * 125.64643 * 0.02562 * 15 13 11 17 17 C 1.54327 * 107.26993 * 181.02218 * 16 15 13 18 18 C 1.55156 * 102.94333 * 22.19289 * 17 16 15 19 19 O 1.42899 * 111.00505 * 82.56827 * 18 17 16 20 20 C 1.50701 * 111.00877 * 206.38656 * 18 17 16 21 21 H 1.07997 * 119.99727 * 354.21386 * 20 18 17 22 22 C 1.37872 * 120.00265 * 174.21513 * 20 18 17 23 23 N 1.31516 * 119.99992 * 4.25955 * 22 20 18 24 24 Si 1.86800 * 119.99993 * 184.26608 * 22 20 18 25 25 H 1.48495 * 109.47467 * 94.98860 * 24 22 20 26 26 H 1.48501 * 109.46936 * 214.99058 * 24 22 20 27 27 H 1.48504 * 109.47098 * 334.98316 * 24 22 20 28 28 C 1.47425 * 125.64760 * 179.71403 * 15 13 11 29 29 H 1.09007 * 109.47007 * 263.73283 * 1 2 3 30 30 H 1.08999 * 109.47465 * 23.73331 * 1 2 3 31 31 H 1.09004 * 109.47455 * 143.73678 * 1 2 3 32 32 H 1.09006 * 109.47434 * 30.00229 * 3 2 1 33 33 H 1.09000 * 109.47062 * 150.00530 * 3 2 1 34 34 H 1.09002 * 110.30618 * 239.49387 * 6 4 3 35 35 H 1.09004 * 110.30889 * 1.55701 * 6 4 3 36 36 H 1.08995 * 110.72344 * 140.31589 * 7 6 4 37 37 H 1.09002 * 110.72404 * 263.59966 * 7 6 4 38 38 H 1.08993 * 110.66783 * 81.02209 * 8 7 6 39 39 H 1.09004 * 110.66889 * 203.98555 * 8 7 6 40 40 H 1.09004 * 109.46797 * 59.99482 * 10 9 4 41 41 H 1.08993 * 109.47542 * 180.02562 * 10 9 4 42 42 H 1.09002 * 109.46491 * 299.99900 * 10 9 4 43 43 H 1.08997 * 109.88688 * 300.43863 * 16 15 13 44 44 H 1.09000 * 109.88482 * 61.61123 * 16 15 13 45 45 H 1.09001 * 110.72415 * 140.55658 * 17 16 15 46 46 H 1.09004 * 110.72217 * 263.65408 * 17 16 15 47 47 H 0.96701 * 114.00520 * 179.97438 * 19 18 17 48 48 H 0.97004 * 119.99750 * 180.02562 * 23 22 20 49 49 H 1.08992 * 110.37089 * 274.74746 * 28 15 13 50 50 H 1.09003 * 110.36374 * 37.07314 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4523 1.7106 -1.4425 5 1 1.5046 1.9096 -1.9427 6 6 3.3290 2.9765 -1.4563 7 6 4.5924 2.5842 -2.2561 8 6 4.1092 1.3752 -3.0960 9 7 3.1979 0.6587 -2.1673 10 6 2.2824 -0.2230 -2.9038 11 6 2.1389 -1.1671 -0.0005 12 8 3.3523 -1.1671 0.0104 13 6 1.3917 -2.4614 -0.0145 14 8 0.1804 -2.4635 0.0579 15 7 2.0636 -3.6265 -0.1020 16 6 3.5244 -3.7687 -0.1890 17 6 3.8321 -5.2771 -0.2975 18 6 2.5010 -5.8656 -0.8351 19 8 2.4157 -5.7262 -2.2547 20 6 2.3437 -7.3076 -0.4265 21 1 3.1491 -7.8152 0.0834 22 6 1.1716 -7.9787 -0.7034 23 7 0.2237 -7.3877 -1.3975 24 14 0.9300 -9.7275 -0.0928 25 1 0.1964 -9.7042 1.1981 26 1 0.1476 -10.4974 -1.0930 27 1 2.2541 -10.3712 0.1018 28 6 1.4559 -4.9695 -0.1199 29 1 -0.3633 -0.1122 1.0216 30 1 -0.3634 0.9407 -0.4136 31 1 -0.3634 -0.8286 -0.6079 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.8055 3.7937 -1.9527 35 1 3.5969 3.2623 -0.4391 36 1 4.9084 3.4020 -2.9037 37 1 5.3983 2.2894 -1.5840 38 1 3.5693 1.7126 -3.9807 39 1 4.9503 0.7421 -3.3784 40 1 1.7151 0.3642 -3.6261 41 1 2.8566 -0.9874 -3.4273 42 1 1.5961 -0.7000 -2.2042 43 1 3.8954 -3.2502 -1.0730 44 1 3.9907 -3.3589 0.7069 45 1 4.6448 -5.4552 -1.0017 46 1 4.0734 -5.6929 0.6808 47 1 1.6008 -6.0802 -2.6366 48 1 -0.6011 -7.8598 -1.5920 49 1 1.2836 -5.3216 0.8971 50 1 0.5214 -4.9556 -0.6809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327038651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:38 Heat of formation + Delta-G solvation = -83.358368 kcal Electronic energy + Delta-G solvation = -32105.366403 eV Core-core repulsion = 27940.675021 eV Total energy + Delta-G solvation = -4164.691381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57558 -39.24163 -38.06358 -37.12741 -35.46714 -34.07179 -32.31475 -32.20881 -30.59227 -30.15978 -27.88049 -26.84095 -26.53404 -25.50786 -24.82248 -23.07239 -21.56638 -21.16084 -20.16239 -19.62542 -18.76558 -17.21225 -16.79228 -16.68500 -16.13566 -15.86845 -15.48304 -15.16948 -15.07815 -14.78663 -14.36878 -14.04140 -13.85490 -13.73864 -13.16080 -13.09546 -12.93078 -12.85061 -12.63587 -12.51143 -12.28699 -12.15294 -12.06320 -11.62855 -11.61118 -11.46543 -11.45485 -11.19335 -11.11885 -11.06221 -10.83139 -10.79985 -10.53350 -10.52069 -10.46641 -10.17846 -9.34449 -8.87361 -8.71571 -8.64794 -8.38897 -8.23327 -7.80024 -6.30399 -4.39337 2.00405 2.72064 3.19895 3.28037 3.31077 3.73747 3.81955 3.94785 4.25738 4.48357 4.50932 4.70442 4.76013 4.97514 4.98982 5.12526 5.23149 5.28689 5.35593 5.38355 5.45942 5.54904 5.55044 5.61480 5.69554 5.74051 5.79826 5.85303 5.90811 5.93544 6.00377 6.04312 6.09679 6.13138 6.38999 6.53726 6.56282 6.77312 6.85893 6.88186 6.91891 7.00090 7.21044 7.32037 7.35717 7.72744 7.95113 8.03220 8.20447 8.58358 8.65278 9.29483 9.42476 10.76768 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.003073 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.676427 B = 9109.678439 C = 9568.136176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.598 5.598 3 C 0.132 3.868 4 C 0.047 3.953 5 H 0.052 0.948 6 C -0.123 4.123 7 C -0.121 4.121 8 C 0.035 3.965 9 N -0.497 5.497 10 C 0.018 3.982 11 C 0.510 3.490 12 O -0.491 6.491 13 C 0.505 3.495 14 O -0.538 6.538 15 N -0.573 5.573 16 C 0.114 3.886 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.582 6.582 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.894 5.894 24 Si 0.904 3.096 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.093 3.907 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.022 0.978 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.383 0.617 48 H 0.270 0.730 49 H 0.065 0.935 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 19.393 -0.154 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C 0.009 3.991 4 C -0.063 4.063 5 H 0.070 0.930 6 C -0.162 4.162 7 C -0.159 4.159 8 C -0.093 4.093 9 N -0.221 5.221 10 C -0.130 4.130 11 C 0.293 3.707 12 O -0.363 6.363 13 C 0.288 3.712 14 O -0.418 6.418 15 N -0.305 5.305 16 C -0.009 4.009 17 C -0.160 4.160 18 C 0.209 3.791 19 O -0.391 6.391 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.533 5.533 24 Si 0.731 3.269 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.196 1.196 28 C -0.028 4.028 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.234 0.766 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.060 19.332 0.272 19.756 hybrid contribution -1.512 -0.651 -0.357 1.685 sum 2.548 18.681 -0.085 18.854 Atomic orbital electron populations 1.22256 0.78358 1.03202 1.03225 1.47578 1.07538 1.05109 1.73069 1.21589 0.97906 0.84229 0.95416 1.22834 0.96125 0.91226 0.96076 0.93026 1.22371 0.96145 0.96273 1.01364 1.22443 0.97759 0.97129 0.98565 1.23236 0.96997 0.95022 0.94056 1.64651 1.17107 1.16305 1.23992 1.22584 0.96079 0.97083 0.97279 1.20151 0.87695 0.84884 0.77967 1.90735 1.12984 1.86741 1.45845 1.19773 0.87223 0.84456 0.79773 1.90631 1.13435 1.86496 1.51278 1.48634 1.09061 1.06219 1.66561 1.22108 0.79562 0.97655 1.01525 1.22713 0.99424 0.92629 1.01236 1.19644 0.88169 0.91999 0.79328 1.86103 1.46316 1.84796 1.21901 1.21502 1.01155 0.95799 1.39092 0.91360 1.25090 0.95461 0.98818 0.93901 1.69657 1.07298 1.38112 1.38199 0.86383 0.78382 0.83506 0.78624 1.20450 1.21007 1.19626 1.23455 1.00106 0.77956 1.01317 0.92551 0.92473 0.87920 0.90362 0.89119 0.91492 0.90702 0.91283 0.90518 0.94238 0.89987 0.95917 0.91135 0.91411 0.91209 0.91759 0.90667 0.90491 0.76596 0.91955 0.91646 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 9.29 59.85 0.56 1.47 16 2 N -0.60 -8.38 1.93 -182.08 -0.35 -8.73 16 3 C 0.13 1.48 4.93 -4.04 -0.02 1.46 16 4 C 0.05 0.50 2.84 -66.64 -0.19 0.31 16 5 H 0.05 0.55 7.74 -51.93 -0.40 0.14 16 6 C -0.12 -1.00 6.57 -25.38 -0.17 -1.17 16 7 C -0.12 -1.04 7.06 -24.88 -0.18 -1.21 16 8 C 0.03 0.37 6.56 -1.90 -0.01 0.36 16 9 N -0.50 -6.44 3.94 -230.78 -0.91 -7.35 16 10 C 0.02 0.26 8.77 60.06 0.53 0.79 16 11 C 0.51 8.93 5.08 -11.59 -0.06 8.87 16 12 O -0.49 -9.16 12.89 5.50 0.07 -9.08 16 13 C 0.50 10.25 7.77 -11.58 -0.09 10.16 16 14 O -0.54 -11.53 13.44 5.49 0.07 -11.45 16 15 N -0.57 -12.28 3.32 -170.88 -0.57 -12.85 16 16 C 0.11 2.26 5.49 -3.06 -0.02 2.24 16 17 C -0.12 -2.53 6.12 -24.90 -0.15 -2.68 16 18 C 0.25 6.04 0.89 -89.50 -0.08 5.96 16 19 O -0.58 -14.86 13.20 -35.23 -0.47 -15.33 16 20 C -0.54 -13.86 8.27 -34.44 -0.28 -14.14 16 21 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 22 C 0.07 1.81 5.25 -17.82 -0.09 1.72 16 23 N -0.89 -23.43 10.69 55.43 0.59 -22.83 16 24 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.09 2.21 5.49 -2.41 -0.01 2.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 31 H 0.10 1.57 5.54 -51.93 -0.29 1.29 16 32 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.09 1.14 7.41 -51.93 -0.38 0.76 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.54 7.69 -51.93 -0.40 0.14 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.39 7.96 -51.93 -0.41 -0.02 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.28 8.01 -51.93 -0.42 -0.14 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.08 5.15 -51.93 -0.27 0.81 16 43 H 0.07 1.41 7.68 -51.93 -0.40 1.01 16 44 H 0.06 1.19 7.61 -51.93 -0.39 0.80 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.49 8.04 -51.93 -0.42 1.08 16 47 H 0.38 10.03 7.25 45.56 0.33 10.36 16 48 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 49 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 50 H 0.09 2.30 7.46 -51.93 -0.39 1.91 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -28.76 385.41 -8.63 -37.40 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.59 Total: 12.98 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -0.27 Total: 16.33 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -1.23 Total: -51.76 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.32 Total: -35.87 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.76 -8.63 -37.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.962 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds