Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99681 * 2 1 4 4 C 1.53002 * 109.47549 * 270.00563 * 3 2 1 5 5 H 1.08997 * 109.90819 * 63.89122 * 4 3 2 6 6 C 1.53990 * 109.92181 * 185.00470 * 4 3 2 7 7 C 1.54590 * 105.14326 * 120.57509 * 6 4 3 8 8 C 1.54934 * 102.92222 * 21.95811 * 7 6 4 9 9 N 1.47908 * 109.91281 * 302.59317 * 4 3 2 10 10 C 1.46899 * 111.00344 * 94.80260 * 9 4 3 11 11 C 1.34767 * 120.00086 * 180.02562 * 2 1 3 12 12 O 1.21350 * 120.00022 * 180.59589 * 11 2 1 13 13 C 1.49453 * 120.00156 * 0.59439 * 11 2 1 14 14 O 1.21352 * 119.99998 * 355.45237 * 13 11 2 15 15 N 1.34778 * 120.00079 * 175.72751 * 13 11 2 16 16 C 1.47021 * 125.64643 * 0.02562 * 15 13 11 17 17 C 1.54327 * 107.26993 * 181.02218 * 16 15 13 18 18 C 1.55156 * 102.94333 * 22.19289 * 17 16 15 19 19 O 1.42899 * 111.00505 * 82.56827 * 18 17 16 20 20 C 1.50701 * 111.00877 * 206.38656 * 18 17 16 21 21 H 1.07997 * 119.99727 * 354.21386 * 20 18 17 22 22 C 1.37872 * 120.00265 * 174.21513 * 20 18 17 23 23 N 1.31516 * 119.99992 * 4.25955 * 22 20 18 24 24 Si 1.86800 * 119.99993 * 184.26608 * 22 20 18 25 25 H 1.48495 * 109.47467 * 94.98860 * 24 22 20 26 26 H 1.48501 * 109.46936 * 214.99058 * 24 22 20 27 27 H 1.48504 * 109.47098 * 334.98316 * 24 22 20 28 28 C 1.47425 * 125.64760 * 179.71403 * 15 13 11 29 29 H 1.09007 * 109.47007 * 263.73283 * 1 2 3 30 30 H 1.08999 * 109.47465 * 23.73331 * 1 2 3 31 31 H 1.09004 * 109.47455 * 143.73678 * 1 2 3 32 32 H 1.09006 * 109.47434 * 30.00229 * 3 2 1 33 33 H 1.09000 * 109.47062 * 150.00530 * 3 2 1 34 34 H 1.09002 * 110.30618 * 239.49387 * 6 4 3 35 35 H 1.09004 * 110.30889 * 1.55701 * 6 4 3 36 36 H 1.08995 * 110.72344 * 140.31589 * 7 6 4 37 37 H 1.09002 * 110.72404 * 263.59966 * 7 6 4 38 38 H 1.08993 * 110.66783 * 81.02209 * 8 7 6 39 39 H 1.09004 * 110.66889 * 203.98555 * 8 7 6 40 40 H 1.09004 * 109.46797 * 59.99482 * 10 9 4 41 41 H 1.08993 * 109.47542 * 180.02562 * 10 9 4 42 42 H 1.09002 * 109.46491 * 299.99900 * 10 9 4 43 43 H 1.08997 * 109.88688 * 300.43863 * 16 15 13 44 44 H 1.09000 * 109.88482 * 61.61123 * 16 15 13 45 45 H 1.09001 * 110.72415 * 140.55658 * 17 16 15 46 46 H 1.09004 * 110.72217 * 263.65408 * 17 16 15 47 47 H 0.96701 * 114.00520 * 179.97438 * 19 18 17 48 48 H 0.97004 * 119.99750 * 180.02562 * 23 22 20 49 49 H 1.08992 * 110.37089 * 274.74746 * 28 15 13 50 50 H 1.09003 * 110.36374 * 37.07314 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4523 1.7106 -1.4425 5 1 1.5046 1.9096 -1.9427 6 6 3.3290 2.9765 -1.4563 7 6 4.5924 2.5842 -2.2561 8 6 4.1092 1.3752 -3.0960 9 7 3.1979 0.6587 -2.1673 10 6 2.2824 -0.2230 -2.9038 11 6 2.1389 -1.1671 -0.0005 12 8 3.3523 -1.1671 0.0104 13 6 1.3917 -2.4614 -0.0145 14 8 0.1804 -2.4635 0.0579 15 7 2.0636 -3.6265 -0.1020 16 6 3.5244 -3.7687 -0.1890 17 6 3.8321 -5.2771 -0.2975 18 6 2.5010 -5.8656 -0.8351 19 8 2.4157 -5.7262 -2.2547 20 6 2.3437 -7.3076 -0.4265 21 1 3.1491 -7.8152 0.0834 22 6 1.1716 -7.9787 -0.7034 23 7 0.2237 -7.3877 -1.3975 24 14 0.9300 -9.7275 -0.0928 25 1 0.1964 -9.7042 1.1981 26 1 0.1476 -10.4974 -1.0930 27 1 2.2541 -10.3712 0.1018 28 6 1.4559 -4.9695 -0.1199 29 1 -0.3633 -0.1122 1.0216 30 1 -0.3634 0.9407 -0.4136 31 1 -0.3634 -0.8286 -0.6079 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.8055 3.7937 -1.9527 35 1 3.5969 3.2623 -0.4391 36 1 4.9084 3.4020 -2.9037 37 1 5.3983 2.2894 -1.5840 38 1 3.5693 1.7126 -3.9807 39 1 4.9503 0.7421 -3.3784 40 1 1.7151 0.3642 -3.6261 41 1 2.8566 -0.9874 -3.4273 42 1 1.5961 -0.7000 -2.2042 43 1 3.8954 -3.2502 -1.0730 44 1 3.9907 -3.3589 0.7069 45 1 4.6448 -5.4552 -1.0017 46 1 4.0734 -5.6929 0.6808 47 1 1.6008 -6.0802 -2.6366 48 1 -0.6011 -7.8598 -1.5920 49 1 1.2836 -5.3216 0.8971 50 1 0.5214 -4.9556 -0.6809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327038651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -103.368080 kcal Electronic energy + Delta-G solvation = -32106.234089 eV Core-core repulsion = 27940.675021 eV Total energy + Delta-G solvation = -4165.559067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95475 -40.47241 -39.44092 -38.75903 -36.81563 -35.78963 -34.21532 -33.17582 -31.91979 -31.48679 -29.69838 -28.02878 -27.78046 -26.90186 -26.06308 -24.61243 -22.94635 -21.96794 -21.50510 -21.06824 -20.19542 -19.15093 -18.24452 -18.02816 -17.43324 -17.12708 -16.94027 -16.60714 -16.38417 -16.26455 -16.00049 -15.20445 -15.06173 -14.90376 -14.69484 -14.59996 -14.51418 -14.03288 -13.94472 -13.85494 -13.55440 -13.45822 -13.32129 -13.26652 -12.97926 -12.85899 -12.57601 -12.50001 -12.34666 -12.27394 -12.21141 -12.18070 -12.11778 -11.97352 -11.87203 -11.46728 -11.20101 -10.67650 -10.40566 -10.19797 -9.89512 -9.54508 -9.18940 -8.26511 -6.42988 0.50378 1.34615 1.43573 1.45647 1.55447 2.25051 2.36716 2.48330 2.99876 3.01413 3.25582 3.72196 3.75269 3.78153 4.03306 4.07781 4.15460 4.19891 4.24910 4.30037 4.33120 4.37324 4.40993 4.48921 4.59757 4.66900 4.67420 4.75070 4.82711 4.87173 4.91216 4.95169 4.98939 5.03794 5.05596 5.06906 5.20245 5.22700 5.33264 5.34518 5.44199 5.49074 5.74133 5.99055 6.02098 6.03466 6.12959 6.38560 6.63560 6.73231 7.07133 7.27810 7.36972 8.79368 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.003073 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.676427 B = 9109.678439 C = 9568.136176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.586 5.586 3 C 0.129 3.871 4 C 0.046 3.954 5 H 0.057 0.943 6 C -0.115 4.115 7 C -0.116 4.116 8 C 0.031 3.969 9 N -0.521 5.521 10 C 0.028 3.972 11 C 0.515 3.485 12 O -0.506 6.506 13 C 0.496 3.504 14 O -0.554 6.554 15 N -0.583 5.583 16 C 0.126 3.874 17 C -0.116 4.116 18 C 0.235 3.765 19 O -0.589 6.589 20 C -0.556 4.556 21 H 0.070 0.930 22 C 0.028 3.972 23 N -0.914 5.914 24 Si 0.965 3.035 25 H -0.276 1.276 26 H -0.283 1.283 27 H -0.266 1.266 28 C 0.108 3.892 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.376 0.624 48 H 0.271 0.729 49 H 0.054 0.946 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 21.644 0.535 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.319 5.319 3 C 0.007 3.993 4 C -0.064 4.064 5 H 0.075 0.925 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.096 4.096 9 N -0.245 5.245 10 C -0.122 4.122 11 C 0.297 3.703 12 O -0.381 6.381 13 C 0.280 3.720 14 O -0.435 6.435 15 N -0.315 5.315 16 C 0.004 3.996 17 C -0.154 4.154 18 C 0.195 3.805 19 O -0.397 6.397 20 C -0.595 4.595 21 H 0.088 0.912 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.791 3.209 25 H -0.202 1.202 26 H -0.209 1.209 27 H -0.191 1.191 28 C -0.014 4.014 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.226 0.774 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.550 21.636 0.964 22.130 hybrid contribution -1.718 -1.283 -0.604 2.227 sum 2.833 20.353 0.360 20.552 Atomic orbital electron populations 1.22245 0.77425 1.04089 1.03081 1.47649 1.08213 1.05002 1.71081 1.21911 0.97724 0.83292 0.96371 1.22915 0.96756 0.91652 0.95070 0.92484 1.22373 0.95300 0.95336 1.02343 1.22430 0.97787 0.96701 0.98460 1.23278 0.96314 0.95559 0.94449 1.64620 1.17526 1.17606 1.24730 1.22401 0.95722 0.97141 0.96900 1.19579 0.87285 0.84732 0.78695 1.90723 1.13233 1.86783 1.47346 1.20517 0.87325 0.85345 0.78769 1.90628 1.14324 1.87040 1.51529 1.48682 1.09622 1.05826 1.67401 1.22043 0.78643 0.96952 1.01969 1.22721 0.97793 0.92935 1.01910 1.19863 0.90152 0.91943 0.78582 1.86098 1.45871 1.84786 1.22967 1.21769 1.01489 0.96734 1.39462 0.91231 1.25813 0.95186 1.02334 0.93940 1.69762 1.07526 1.39328 1.38725 0.85427 0.78328 0.79217 0.77975 1.20205 1.20863 1.19062 1.23016 0.98798 0.79670 0.99917 0.92230 0.88544 0.90908 0.86532 0.90310 0.89443 0.89413 0.89136 0.91384 0.93489 0.91201 0.94572 0.93106 0.93666 0.91823 0.90135 0.89936 0.89020 0.77403 0.91952 0.92755 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 9.29 127.77 1.19 2.94 16 2 N -0.59 -15.59 1.93 -848.33 -1.64 -17.23 16 3 C 0.13 2.52 4.93 86.38 0.43 2.95 16 4 C 0.05 0.84 2.84 45.06 0.13 0.97 16 5 H 0.06 1.01 7.74 -2.39 -0.02 0.99 16 6 C -0.12 -1.44 6.57 31.47 0.21 -1.23 16 7 C -0.12 -1.68 7.06 31.80 0.22 -1.45 16 8 C 0.03 0.63 6.56 86.65 0.57 1.20 16 9 N -0.52 -12.94 3.94 -884.06 -3.48 -16.42 16 10 C 0.03 0.77 8.77 127.69 1.12 1.89 16 11 C 0.52 17.95 5.08 87.27 0.44 18.40 16 12 O -0.51 -18.75 12.89 -3.25 -0.04 -18.79 16 13 C 0.50 20.63 7.77 87.27 0.68 21.31 16 14 O -0.55 -24.51 13.44 -3.25 -0.04 -24.56 16 15 N -0.58 -25.64 3.32 -812.91 -2.70 -28.35 16 16 C 0.13 5.01 5.49 86.73 0.48 5.48 16 17 C -0.12 -4.79 6.12 31.78 0.19 -4.59 16 18 C 0.24 11.64 0.89 -10.07 -0.01 11.63 16 19 O -0.59 -31.04 13.20 -148.98 -1.97 -33.01 16 20 C -0.56 -29.03 8.27 25.60 0.21 -28.82 16 21 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 22 C 0.03 1.47 5.25 84.65 0.44 1.92 16 23 N -0.91 -49.14 10.69 21.45 0.23 -48.91 16 24 Si 0.97 41.47 29.54 68.60 2.03 43.49 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 C 0.11 5.36 5.49 86.93 0.48 5.83 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.10 1.55 8.02 -2.39 -0.02 1.53 16 31 H 0.07 2.24 5.54 -2.39 -0.01 2.23 16 32 H 0.12 1.43 8.07 -2.38 -0.02 1.41 16 33 H 0.08 1.80 7.41 -2.39 -0.02 1.78 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.91 7.69 -2.38 -0.02 0.89 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 0.86 7.96 -2.39 -0.02 0.84 16 39 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.04 0.88 8.01 -2.39 -0.02 0.86 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.04 1.45 5.15 -2.39 -0.01 1.44 16 43 H 0.06 2.60 7.68 -2.39 -0.02 2.58 16 44 H 0.08 2.94 7.61 -2.39 -0.02 2.92 16 45 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.09 3.49 8.04 -2.39 -0.02 3.47 16 47 H 0.38 20.57 7.25 -74.06 -0.54 20.03 16 48 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 49 H 0.05 2.75 8.03 -2.39 -0.02 2.73 16 50 H 0.05 3.03 7.46 -2.39 -0.02 3.01 16 Total: -1.00 -63.81 385.41 -0.43 -64.25 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: 0.41 Total: 41.10 kcal Atomic # 6 Polarization: 31.64 SS G_CDS: 6.78 Total: 38.42 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -7.59 Total: -110.90 kcal Atomic # 8 Polarization: -74.31 SS G_CDS: -2.05 Total: -76.36 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -63.81 -0.43 -64.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.122 kcal (2) G-P(sol) polarization free energy of solvation -63.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds