Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00181 * 2 1 4 4 O 1.21281 * 119.99613 * 355.22560 * 3 2 1 5 5 C 1.50700 * 120.00196 * 175.23196 * 3 2 1 6 6 C 1.50705 * 112.84570 * 306.45508 * 5 3 2 7 7 O 1.21287 * 119.99642 * 107.94139 * 6 5 3 8 8 N 1.34775 * 120.00111 * 287.93689 * 6 5 3 9 9 C 1.46920 * 120.63069 * 6.36747 * 8 6 5 10 10 C 1.53627 * 108.54317 * 126.36792 * 9 8 6 11 11 C 1.53037 * 109.23935 * 54.85849 * 10 9 8 12 12 C 1.53042 * 109.53664 * 298.50922 * 11 10 9 13 13 C 1.53004 * 109.49784 * 181.31551 * 12 11 10 14 14 O 1.42905 * 109.46779 * 65.16397 * 13 12 11 15 15 N 1.46495 * 109.52763 * 301.40076 * 12 11 10 16 16 C 1.36940 * 119.99450 * 299.85517 * 15 12 11 17 17 H 1.07998 * 120.00548 * 359.97438 * 16 15 12 18 18 C 1.38813 * 119.99576 * 180.02562 * 16 15 12 19 19 N 1.31625 * 120.00274 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47362 * 89.99956 * 20 18 16 22 22 H 1.48507 * 109.47071 * 210.00036 * 20 18 16 23 23 H 1.48501 * 109.46897 * 329.99775 * 20 18 16 24 24 C 1.46925 * 120.62933 * 186.65163 * 8 6 5 25 25 C 1.53783 * 113.69214 * 77.72448 * 5 3 2 26 26 C 1.53781 * 87.07923 * 89.12777 * 25 5 3 27 27 C 1.53781 * 113.61626 * 175.26198 * 5 3 2 28 28 H 1.08999 * 109.47056 * 60.00266 * 1 2 3 29 29 H 1.09005 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47153 * 299.99768 * 1 2 3 31 31 H 0.97002 * 120.00136 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.58840 * 246.20165 * 9 8 6 33 33 H 1.09001 * 109.58606 * 6.62645 * 9 8 6 34 34 H 1.09003 * 109.63503 * 294.86778 * 10 9 8 35 35 H 1.08999 * 109.45589 * 174.74328 * 10 9 8 36 36 H 1.09003 * 109.46383 * 178.49101 * 11 10 9 37 37 H 1.09002 * 109.46095 * 58.53020 * 11 10 9 38 38 H 1.09000 * 109.47341 * 185.16349 * 13 12 11 39 39 H 1.09005 * 109.47347 * 305.16810 * 13 12 11 40 40 H 0.96703 * 113.99877 * 180.02562 * 14 13 12 41 41 H 0.97000 * 120.00575 * 119.85341 * 15 12 11 42 42 H 0.96997 * 120.00005 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.58788 * 353.37175 * 24 8 6 44 44 H 1.08994 * 109.58862 * 113.65621 * 24 8 6 45 45 H 1.09000 * 113.61247 * 203.67533 * 25 5 3 46 46 H 1.09000 * 113.61330 * 334.57822 * 25 5 3 47 47 H 1.08992 * 113.61598 * 270.88374 * 26 25 5 48 48 H 1.08999 * 113.68388 * 139.99251 * 26 25 5 49 49 H 1.08999 * 113.61278 * 25.34064 * 27 5 3 50 50 H 1.08993 * 113.61587 * 156.24573 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5356 2.2157 -0.0874 5 6 3.6420 1.1694 0.1085 6 6 4.1439 0.3922 1.2981 7 8 4.6922 -0.6774 1.1361 8 7 3.9836 0.8858 2.5419 9 6 3.2012 2.1088 2.7669 10 6 2.1233 1.8124 3.8206 11 6 2.7892 1.2523 5.0795 12 6 3.5042 -0.0577 4.7406 13 6 4.1419 -0.6337 6.0065 14 8 3.1167 -0.9957 6.9339 15 7 2.5382 -1.0171 4.1997 16 6 1.4694 -1.4139 4.9582 17 1 1.3388 -1.0200 5.9553 18 6 0.5544 -2.3234 4.4459 19 7 0.7137 -2.8039 3.2309 20 14 -0.9041 -2.8643 5.4802 21 1 -2.0498 -1.9518 5.2360 22 1 -1.2873 -4.2502 5.1091 23 1 -0.5345 -2.8210 6.9179 24 6 4.5931 0.2145 3.6980 25 6 4.3569 0.8140 -1.2059 26 6 4.3255 2.3154 -1.5372 27 6 4.2669 2.5685 -0.0215 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.8577 2.9019 3.1248 33 1 2.7279 2.4165 1.8344 34 1 1.4172 1.0814 3.4266 35 1 1.5942 2.7328 4.0676 36 1 2.0304 1.0657 5.8394 37 1 3.5131 1.9735 5.4589 38 1 4.7273 -1.5165 5.7491 39 1 4.7929 0.1148 6.4584 40 1 3.4492 -1.3686 7.7619 41 1 2.6556 -1.3712 3.3043 42 1 0.0741 -3.4391 2.8728 43 1 5.0385 -0.7282 3.3802 44 1 5.3625 0.8551 4.1288 45 1 5.3628 0.4194 -1.0628 46 1 3.7542 0.2054 -1.8800 47 1 3.4254 2.6269 -2.0670 48 1 5.2399 2.6796 -2.0057 49 1 3.5915 3.3763 0.2604 50 1 5.2481 2.6535 0.4453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327603817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -70.819159 kcal Electronic energy + Delta-G solvation = -33469.598014 eV Core-core repulsion = 29305.450374 eV Total energy + Delta-G solvation = -4164.147640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31225 -39.23720 -37.95936 -36.84215 -35.74901 -34.29822 -33.79672 -32.00819 -31.27947 -28.95417 -28.16864 -26.35439 -25.61190 -25.21876 -24.50855 -23.45209 -21.77089 -21.40709 -20.19389 -19.03768 -18.40486 -17.52246 -17.30892 -16.33742 -16.17876 -15.94460 -15.62550 -15.02796 -14.83505 -14.79050 -14.38676 -14.04342 -13.83500 -13.80392 -13.42146 -13.19080 -13.00547 -12.86573 -12.57872 -12.48918 -12.26675 -12.04499 -11.96628 -11.83487 -11.79315 -11.29927 -11.16799 -11.04553 -10.78703 -10.71817 -10.55744 -10.32932 -10.27908 -10.06485 -9.89772 -9.78850 -9.48366 -9.32600 -8.97399 -8.82440 -8.73971 -8.24694 -6.83507 -5.59631 -2.85377 2.56553 2.84863 3.19667 3.42506 3.50875 3.57131 3.59242 4.39904 4.45572 4.60288 4.69354 4.71428 4.84237 4.89488 5.20311 5.31334 5.36302 5.47056 5.56627 5.58219 5.67327 5.68644 5.69475 5.79177 5.80117 5.82754 5.83152 5.87806 5.90011 5.94382 5.96718 6.04876 6.13143 6.17808 6.19898 6.26992 6.38023 6.54792 6.63944 6.74727 6.84886 7.00073 7.10856 7.65593 7.70333 8.11411 8.33830 8.35994 8.40385 8.58710 9.70995 10.21879 10.59428 11.62925 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.005303 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.230319 B = 5278.914348 C = 6434.750041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.711 5.711 3 C 0.547 3.453 4 O -0.539 6.539 5 C -0.135 4.135 6 C 0.536 3.464 7 O -0.532 6.532 8 N -0.589 5.589 9 C 0.100 3.900 10 C -0.125 4.125 11 C -0.117 4.117 12 C 0.189 3.811 13 C 0.074 3.926 14 O -0.534 6.534 15 N -0.702 5.702 16 C -0.200 4.200 17 H 0.091 0.909 18 C -0.024 4.024 19 N -0.938 5.938 20 Si 0.900 3.100 21 H -0.296 1.296 22 H -0.298 1.298 23 H -0.284 1.284 24 C 0.114 3.886 25 C -0.102 4.102 26 C -0.140 4.140 27 C -0.110 4.110 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.409 0.591 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.023 0.977 40 H 0.350 0.650 41 H 0.384 0.616 42 H 0.248 0.752 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 10.574 -5.101 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.360 5.360 3 C 0.332 3.668 4 O -0.417 6.417 5 C -0.141 4.141 6 C 0.323 3.677 7 O -0.409 6.409 8 N -0.320 5.320 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.157 4.157 12 C 0.096 3.904 13 C -0.007 4.007 14 O -0.337 6.337 15 N -0.342 5.342 16 C -0.331 4.331 17 H 0.109 0.891 18 C -0.218 4.218 19 N -0.589 5.589 20 Si 0.733 3.267 21 H -0.224 1.224 22 H -0.224 1.224 23 H -0.210 1.210 24 C -0.009 4.009 25 C -0.140 4.140 26 C -0.177 4.177 27 C -0.148 4.148 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.244 0.756 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.195 0.805 41 H 0.218 0.782 42 H 0.057 0.943 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.109 0.891 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.949 10.909 -5.594 14.612 hybrid contribution -0.333 -1.224 0.998 1.614 sum 7.617 9.685 -4.596 13.151 Atomic orbital electron populations 1.21507 0.78800 1.02956 1.01513 1.45644 1.08252 1.08639 1.73472 1.19308 0.87373 0.84118 0.76025 1.90671 1.69348 1.31344 1.50317 1.22321 0.94383 1.00497 0.96943 1.19805 0.79443 0.85167 0.83332 1.90711 1.44178 1.20791 1.85172 1.47789 1.51457 1.27068 1.05720 1.22093 0.93526 0.85552 1.01113 1.21839 0.97860 1.01013 0.95593 1.21885 0.99841 0.96384 0.97560 1.19938 0.89853 0.90751 0.89892 1.22709 0.89851 0.96779 0.91328 1.86937 1.33193 1.84709 1.28823 1.42361 1.26060 1.48673 1.17096 1.19542 0.98709 1.17925 0.96970 0.89146 1.24680 0.99471 1.00882 0.96750 1.69682 1.37847 1.35667 1.15715 0.86269 0.83335 0.77365 0.79721 1.22434 1.22440 1.21021 1.21735 0.94787 0.98397 0.85974 1.22790 1.01306 0.97176 0.92710 1.22865 1.02744 0.95816 0.96281 1.22889 1.00903 0.93971 0.97017 0.92839 0.90146 0.91943 0.75607 0.92053 0.89248 0.89485 0.92301 0.90799 0.94057 0.94619 0.95887 0.80488 0.78208 0.94258 0.88839 0.91621 0.88231 0.90624 0.89553 0.90686 0.89134 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 10.71 59.85 0.64 2.14 16 2 N -0.71 -11.66 5.60 -67.08 -0.38 -12.04 16 3 C 0.55 8.89 5.32 -10.99 -0.06 8.83 16 4 O -0.54 -9.62 14.95 5.56 0.08 -9.54 16 5 C -0.13 -1.94 0.56 -156.00 -0.09 -2.03 16 6 C 0.54 9.09 6.39 -10.98 -0.07 9.02 16 7 O -0.53 -10.51 15.74 5.55 0.09 -10.42 16 8 N -0.59 -9.61 2.86 -172.51 -0.49 -10.10 16 9 C 0.10 1.51 5.56 -3.49 -0.02 1.49 16 10 C -0.12 -2.17 5.95 -26.39 -0.16 -2.32 16 11 C -0.12 -2.06 4.43 -26.69 -0.12 -2.18 16 12 C 0.19 3.55 0.68 -131.70 -0.09 3.46 16 13 C 0.07 1.29 6.09 37.16 0.23 1.52 16 14 O -0.53 -10.06 9.91 -35.23 -0.35 -10.41 16 15 N -0.70 -16.63 4.22 -47.12 -0.20 -16.83 16 16 C -0.20 -5.31 8.14 -15.06 -0.12 -5.44 16 17 H 0.09 2.44 5.29 -52.49 -0.28 2.16 16 18 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 19 N -0.94 -27.32 13.06 55.49 0.72 -26.59 16 20 Si 0.90 22.73 29.55 -169.99 -5.02 17.70 16 21 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.11 1.90 5.15 -3.71 -0.02 1.88 16 25 C -0.10 -1.24 6.88 -25.92 -0.18 -1.42 16 26 C -0.14 -1.47 7.79 -25.92 -0.20 -1.67 16 27 C -0.11 -1.30 5.65 -25.92 -0.15 -1.44 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.41 6.89 8.70 -40.82 -0.36 6.54 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.39 3.31 -51.93 -0.17 1.22 16 34 H 0.09 1.89 7.53 -51.93 -0.39 1.50 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.48 6.98 -51.93 -0.36 1.12 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.35 4.91 9.12 45.56 0.42 5.33 16 41 H 0.38 10.13 7.65 -40.82 -0.31 9.82 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.09 1.73 7.00 -51.93 -0.36 1.37 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.20 7.84 -51.93 -0.41 0.79 16 46 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.11 6.70 -51.93 -0.35 0.77 16 50 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -32.41 386.21 -7.42 -39.84 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -7.20 Total: 21.49 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -0.50 Total: 11.09 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -0.34 Total: -65.57 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.18 Total: -30.37 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.41 -7.42 -39.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327603817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.983 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds