Wall clock time and date at job start Sat Apr 11 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00181 * 2 1 4 4 O 1.21281 * 119.99613 * 355.22560 * 3 2 1 5 5 C 1.50700 * 120.00196 * 175.23196 * 3 2 1 6 6 C 1.50705 * 112.84570 * 306.45508 * 5 3 2 7 7 O 1.21287 * 119.99642 * 107.94139 * 6 5 3 8 8 N 1.34775 * 120.00111 * 287.93689 * 6 5 3 9 9 C 1.46920 * 120.63069 * 6.36747 * 8 6 5 10 10 C 1.53627 * 108.54317 * 126.36792 * 9 8 6 11 11 C 1.53037 * 109.23935 * 54.85849 * 10 9 8 12 12 C 1.53042 * 109.53664 * 298.50922 * 11 10 9 13 13 C 1.53004 * 109.49784 * 181.31551 * 12 11 10 14 14 O 1.42905 * 109.46779 * 65.16397 * 13 12 11 15 15 N 1.46495 * 109.52763 * 301.40076 * 12 11 10 16 16 C 1.36940 * 119.99450 * 299.85517 * 15 12 11 17 17 H 1.07998 * 120.00548 * 359.97438 * 16 15 12 18 18 C 1.38813 * 119.99576 * 180.02562 * 16 15 12 19 19 N 1.31625 * 120.00274 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47362 * 89.99956 * 20 18 16 22 22 H 1.48507 * 109.47071 * 210.00036 * 20 18 16 23 23 H 1.48501 * 109.46897 * 329.99775 * 20 18 16 24 24 C 1.46925 * 120.62933 * 186.65163 * 8 6 5 25 25 C 1.53783 * 113.69214 * 77.72448 * 5 3 2 26 26 C 1.53781 * 87.07923 * 89.12777 * 25 5 3 27 27 C 1.53781 * 113.61626 * 175.26198 * 5 3 2 28 28 H 1.08999 * 109.47056 * 60.00266 * 1 2 3 29 29 H 1.09005 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47153 * 299.99768 * 1 2 3 31 31 H 0.97002 * 120.00136 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.58840 * 246.20165 * 9 8 6 33 33 H 1.09001 * 109.58606 * 6.62645 * 9 8 6 34 34 H 1.09003 * 109.63503 * 294.86778 * 10 9 8 35 35 H 1.08999 * 109.45589 * 174.74328 * 10 9 8 36 36 H 1.09003 * 109.46383 * 178.49101 * 11 10 9 37 37 H 1.09002 * 109.46095 * 58.53020 * 11 10 9 38 38 H 1.09000 * 109.47341 * 185.16349 * 13 12 11 39 39 H 1.09005 * 109.47347 * 305.16810 * 13 12 11 40 40 H 0.96703 * 113.99877 * 180.02562 * 14 13 12 41 41 H 0.97000 * 120.00575 * 119.85341 * 15 12 11 42 42 H 0.96997 * 120.00005 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.58788 * 353.37175 * 24 8 6 44 44 H 1.08994 * 109.58862 * 113.65621 * 24 8 6 45 45 H 1.09000 * 113.61247 * 203.67533 * 25 5 3 46 46 H 1.09000 * 113.61330 * 334.57822 * 25 5 3 47 47 H 1.08992 * 113.61598 * 270.88374 * 26 25 5 48 48 H 1.08999 * 113.68388 * 139.99251 * 26 25 5 49 49 H 1.08999 * 113.61278 * 25.34064 * 27 5 3 50 50 H 1.08993 * 113.61587 * 156.24573 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5356 2.2157 -0.0874 5 6 3.6420 1.1694 0.1085 6 6 4.1439 0.3922 1.2981 7 8 4.6922 -0.6774 1.1361 8 7 3.9836 0.8858 2.5419 9 6 3.2012 2.1088 2.7669 10 6 2.1233 1.8124 3.8206 11 6 2.7892 1.2523 5.0795 12 6 3.5042 -0.0577 4.7406 13 6 4.1419 -0.6337 6.0065 14 8 3.1167 -0.9957 6.9339 15 7 2.5382 -1.0171 4.1997 16 6 1.4694 -1.4139 4.9582 17 1 1.3388 -1.0200 5.9553 18 6 0.5544 -2.3234 4.4459 19 7 0.7137 -2.8039 3.2309 20 14 -0.9041 -2.8643 5.4802 21 1 -2.0498 -1.9518 5.2360 22 1 -1.2873 -4.2502 5.1091 23 1 -0.5345 -2.8210 6.9179 24 6 4.5931 0.2145 3.6980 25 6 4.3569 0.8140 -1.2059 26 6 4.3255 2.3154 -1.5372 27 6 4.2669 2.5685 -0.0215 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.8577 2.9019 3.1248 33 1 2.7279 2.4165 1.8344 34 1 1.4172 1.0814 3.4266 35 1 1.5942 2.7328 4.0676 36 1 2.0304 1.0657 5.8394 37 1 3.5131 1.9735 5.4589 38 1 4.7273 -1.5165 5.7491 39 1 4.7929 0.1148 6.4584 40 1 3.4492 -1.3686 7.7619 41 1 2.6556 -1.3712 3.3043 42 1 0.0741 -3.4391 2.8728 43 1 5.0385 -0.7282 3.3802 44 1 5.3625 0.8551 4.1288 45 1 5.3628 0.4194 -1.0628 46 1 3.7542 0.2054 -1.8800 47 1 3.4254 2.6269 -2.0670 48 1 5.2399 2.6796 -2.0057 49 1 3.5915 3.3763 0.2604 50 1 5.2481 2.6535 0.4453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327603817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:52 Heat of formation + Delta-G solvation = -96.441798 kcal Electronic energy + Delta-G solvation = -33470.709095 eV Core-core repulsion = 29305.450374 eV Total energy + Delta-G solvation = -4165.258721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.51767 -40.60029 -39.34421 -38.01589 -37.14580 -35.64486 -35.48381 -33.73440 -32.72011 -30.67325 -29.46788 -27.58049 -26.81802 -26.37816 -25.85728 -25.35684 -23.14991 -22.58745 -21.41361 -20.28965 -19.87173 -19.14291 -18.75472 -17.89249 -17.35557 -17.26829 -16.93589 -16.61981 -16.15516 -15.97813 -15.78635 -15.77380 -15.29960 -15.09527 -14.95880 -14.78659 -14.34334 -14.20801 -13.86679 -13.70336 -13.51205 -13.44327 -13.27821 -13.22242 -13.01558 -12.84078 -12.67285 -12.62582 -12.37849 -12.01746 -11.96222 -11.80090 -11.74045 -11.54061 -11.40660 -11.23337 -11.01680 -10.76334 -10.58185 -10.51973 -10.16254 -9.57148 -8.80306 -7.72242 -4.95324 1.25702 1.46888 1.48214 1.55702 1.56705 1.95927 2.19096 2.67286 3.35795 3.36728 3.45700 3.52511 3.62116 3.72431 3.79522 3.83616 3.98221 4.11973 4.22621 4.31282 4.40502 4.42584 4.49145 4.54359 4.55723 4.59646 4.66542 4.68545 4.78561 4.80257 4.84058 4.85836 4.97381 4.97883 5.01783 5.02596 5.06298 5.29166 5.32714 5.38693 5.50914 5.55444 5.63706 5.97781 6.34714 6.38699 6.49239 7.02952 7.09136 7.17394 7.56941 8.26646 8.51470 9.50788 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.005303 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.230319 B = 5278.914348 C = 6434.750041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.717 5.717 3 C 0.547 3.453 4 O -0.556 6.556 5 C -0.141 4.141 6 C 0.533 3.467 7 O -0.567 6.567 8 N -0.589 5.589 9 C 0.105 3.895 10 C -0.121 4.121 11 C -0.108 4.108 12 C 0.175 3.825 13 C 0.076 3.924 14 O -0.564 6.564 15 N -0.710 5.710 16 C -0.174 4.174 17 H 0.089 0.911 18 C -0.088 4.088 19 N -0.969 5.969 20 Si 0.951 3.049 21 H -0.300 1.300 22 H -0.308 1.308 23 H -0.278 1.278 24 C 0.117 3.883 25 C -0.101 4.101 26 C -0.126 4.126 27 C -0.102 4.102 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.405 0.595 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.373 0.627 41 H 0.366 0.634 42 H 0.238 0.762 43 H 0.070 0.930 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.087 0.913 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 13.131 -4.477 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.365 5.365 3 C 0.332 3.668 4 O -0.435 6.435 5 C -0.147 4.147 6 C 0.320 3.680 7 O -0.446 6.446 8 N -0.320 5.320 9 C -0.017 4.017 10 C -0.159 4.159 11 C -0.147 4.147 12 C 0.084 3.916 13 C -0.004 4.004 14 O -0.370 6.370 15 N -0.348 5.348 16 C -0.307 4.307 17 H 0.107 0.893 18 C -0.278 4.278 19 N -0.623 5.623 20 Si 0.784 3.216 21 H -0.229 1.229 22 H -0.235 1.235 23 H -0.203 1.203 24 C -0.006 4.006 25 C -0.139 4.139 26 C -0.163 4.163 27 C -0.140 4.140 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.239 0.761 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.220 0.780 41 H 0.198 0.802 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.122 0.878 49 H 0.106 0.894 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.117 13.517 -4.907 17.582 hybrid contribution -0.951 -1.973 0.895 2.366 sum 9.166 11.544 -4.012 15.277 Atomic orbital electron populations 1.21466 0.78745 1.03020 1.01168 1.45764 1.08498 1.08771 1.73453 1.19631 0.88270 0.83561 0.75298 1.90651 1.69985 1.31716 1.51198 1.22427 0.92957 1.02505 0.96860 1.20231 0.78870 0.84767 0.84096 1.90691 1.45895 1.22251 1.85738 1.47885 1.51209 1.27308 1.05568 1.22155 0.93401 0.85854 1.00268 1.21750 0.97781 1.00296 0.96117 1.21774 0.99775 0.96439 0.96758 1.20366 0.89710 0.90223 0.91295 1.22622 0.89567 0.97582 0.90621 1.86817 1.34759 1.85137 1.30291 1.42465 1.26542 1.49660 1.16129 1.19720 0.98550 1.15777 0.96636 0.89294 1.25250 1.02020 1.02657 0.97879 1.69817 1.38524 1.36916 1.17007 0.85436 0.81149 0.76180 0.78827 1.22882 1.23529 1.20344 1.21738 0.94718 0.98573 0.85525 1.22851 1.01031 0.98674 0.91389 1.22799 1.03839 0.94032 0.95606 1.22963 1.01320 0.91705 0.98006 0.90946 0.89957 0.94331 0.76086 0.87963 0.89745 0.94745 0.90489 0.93618 0.90006 0.95517 0.91485 0.77958 0.80215 0.95324 0.91118 0.87279 0.87908 0.90808 0.90234 0.87821 0.89403 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.27 10.71 127.77 1.37 4.63 16 2 N -0.72 -24.39 5.60 -484.52 -2.71 -27.11 16 3 C 0.55 17.78 5.32 87.66 0.47 18.24 16 4 O -0.56 -19.69 14.95 -3.03 -0.05 -19.74 16 5 C -0.14 -3.91 0.56 -53.15 -0.03 -3.94 16 6 C 0.53 17.68 6.39 87.66 0.56 18.24 16 7 O -0.57 -22.54 15.74 -3.05 -0.05 -22.59 16 8 N -0.59 -18.19 2.86 -818.08 -2.34 -20.53 16 9 C 0.11 2.90 5.56 86.51 0.48 3.39 16 10 C -0.12 -4.03 5.95 30.82 0.18 -3.85 16 11 C -0.11 -3.54 4.43 30.62 0.14 -3.40 16 12 C 0.18 6.30 0.68 3.69 0.00 6.30 16 13 C 0.08 2.45 6.09 71.98 0.44 2.89 16 14 O -0.56 -20.27 9.91 -148.98 -1.48 -21.75 16 15 N -0.71 -34.07 4.22 -302.99 -1.28 -35.35 16 16 C -0.17 -9.40 8.14 84.03 0.68 -8.72 16 17 H 0.09 4.81 5.29 -2.91 -0.02 4.80 16 18 C -0.09 -5.06 5.50 84.86 0.47 -4.59 16 19 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 20 Si 0.95 48.12 29.55 68.60 2.03 50.14 16 21 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 22 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 C 0.12 3.64 5.15 86.36 0.44 4.09 16 25 C -0.10 -2.32 6.88 31.12 0.21 -2.11 16 26 C -0.13 -2.30 7.79 31.12 0.24 -2.06 16 27 C -0.10 -2.12 5.65 31.12 0.18 -1.95 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.41 14.40 8.70 -92.71 -0.81 13.59 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.48 3.31 -2.39 -0.01 2.47 16 34 H 0.03 1.51 7.53 -2.39 -0.02 1.49 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.76 6.98 -2.39 -0.02 1.74 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.37 9.67 9.12 -74.06 -0.68 8.99 16 41 H 0.37 19.99 7.65 -92.71 -0.71 19.28 16 42 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.07 2.56 7.00 -2.39 -0.02 2.55 16 44 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.10 2.32 7.84 -2.39 -0.02 2.30 16 46 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.09 1.91 6.70 -2.39 -0.02 1.90 16 50 H 0.11 1.87 8.09 -2.39 -0.02 1.85 16 Total: -1.00 -73.43 386.21 -0.96 -74.39 By element: Atomic # 1 Polarization: 55.00 SS G_CDS: -1.20 Total: 53.80 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 5.83 Total: 27.17 kcal Atomic # 7 Polarization: -135.39 SS G_CDS: -6.05 Total: -141.44 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -1.57 Total: -64.07 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.14 kcal Total: -73.43 -0.96 -74.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327603817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.051 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds