Wall clock time and date at job start Sat Apr 11 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.33353 * 117.95007 * 2 1 4 4 O 1.21285 * 118.24485 * 357.79634 * 3 2 1 5 5 C 1.50175 * 123.50796 * 177.77976 * 3 2 1 6 6 C 1.53067 * 109.89542 * 17.57907 * 5 3 2 7 7 C 1.53347 * 108.42556 * 311.10393 * 6 5 3 8 8 C 1.45753 * 117.94597 * 180.02562 * 2 1 3 9 9 H 1.09002 * 109.13764 * 78.86453 * 8 2 1 10 10 C 1.50697 * 109.29957 * 319.38572 * 8 2 1 11 11 O 1.21288 * 119.99933 * 338.96538 * 10 8 2 12 12 N 1.34780 * 120.00489 * 158.96573 * 10 8 2 13 13 C 1.46926 * 120.63278 * 180.02562 * 12 10 8 14 14 C 1.53191 * 108.89109 * 126.46534 * 13 12 10 15 15 C 1.53044 * 109.31440 * 54.56430 * 14 13 12 16 16 O 1.42899 * 109.45936 * 58.65219 * 15 14 13 17 17 C 1.53003 * 109.45946 * 178.61278 * 15 14 13 18 18 N 1.46497 * 109.46807 * 179.97438 * 17 15 14 19 19 C 1.36940 * 119.99910 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99478 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00262 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00252 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99693 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46921 * 89.99918 * 23 21 19 25 25 H 1.48499 * 109.47097 * 209.99996 * 23 21 19 26 26 H 1.48505 * 109.47241 * 330.00062 * 23 21 19 27 27 C 1.53040 * 109.53662 * 298.63203 * 15 14 13 28 28 C 1.46957 * 120.64915 * 359.81927 * 12 10 8 29 29 H 1.08996 * 109.47026 * 270.00446 * 1 2 3 30 30 H 1.09006 * 109.46784 * 30.00168 * 1 2 3 31 31 H 1.08995 * 109.47416 * 149.99469 * 1 2 3 32 32 H 1.09001 * 109.39851 * 257.45214 * 5 3 2 33 33 H 1.09006 * 109.33265 * 137.66944 * 5 3 2 34 34 H 1.09004 * 109.67554 * 191.36844 * 6 5 3 35 35 H 1.09004 * 109.70091 * 70.84893 * 6 5 3 36 36 H 1.09005 * 109.60114 * 307.77163 * 7 6 5 37 37 H 1.08992 * 109.60459 * 187.29045 * 7 6 5 38 38 H 1.09002 * 109.58861 * 6.60537 * 13 12 10 39 39 H 1.08996 * 109.58519 * 246.32428 * 13 12 10 40 40 H 1.09003 * 109.49294 * 174.51508 * 14 13 12 41 41 H 1.09001 * 109.49969 * 294.57596 * 14 13 12 42 42 H 0.96702 * 114.00094 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.47116 * 299.99703 * 17 15 14 44 44 H 1.09001 * 109.47011 * 60.00012 * 17 15 14 45 45 H 0.96999 * 120.00296 * 359.97438 * 18 17 15 46 46 H 0.96998 * 120.00089 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.49643 * 181.31582 * 27 15 14 48 48 H 1.08996 * 109.49892 * 301.41776 * 27 15 14 49 49 H 1.09001 * 109.46843 * 113.75181 * 28 12 10 50 50 H 1.08997 * 109.71602 * 353.46674 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0900 1.1780 0.0000 4 8 1.4159 2.1854 -0.0411 5 6 3.5839 1.3239 0.0485 6 6 4.2493 0.0012 -0.3397 7 6 3.5948 -1.1261 0.4681 8 6 2.1480 -1.2876 -0.0006 9 1 2.1398 -1.6960 -1.0111 10 6 1.4277 -2.2339 0.9249 11 8 0.7037 -1.7979 1.7948 12 7 1.5879 -3.5650 0.7860 13 6 0.8918 -4.5001 1.6802 14 6 0.1144 -5.5117 0.8321 15 6 1.0695 -6.1822 -0.1580 16 8 2.1220 -6.8295 0.5597 17 6 0.3035 -7.2181 -0.9833 18 7 1.2174 -7.8595 -1.9316 19 6 0.7534 -8.8278 -2.7816 20 1 -0.2864 -9.1181 -2.7530 21 6 1.6192 -9.4353 -3.6806 22 7 1.1734 -10.3662 -4.4971 23 14 3.4176 -8.9325 -3.7304 24 1 4.1948 -9.7803 -2.7910 25 1 3.9433 -9.1098 -5.1079 26 1 3.5445 -7.5076 -3.3318 27 6 1.6640 -5.1250 -1.0915 28 6 2.4585 -4.1090 -0.2655 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 3.8881 1.5995 1.0582 33 1 3.8932 2.1030 -0.6482 34 1 5.3143 0.0454 -0.1118 35 1 4.1092 -0.1818 -1.4051 36 1 3.6101 -0.8727 1.5282 37 1 4.1383 -2.0565 0.3043 38 1 0.2000 -3.9497 2.3178 39 1 1.6200 -5.0248 2.2986 40 1 -0.3264 -6.2681 1.4815 41 1 -0.6754 -4.9970 0.2849 42 1 2.7664 -7.2771 -0.0057 43 1 -0.1189 -7.9717 -0.3188 44 1 -0.4998 -6.7247 -1.5305 45 1 2.1513 -7.5985 -1.9575 46 1 1.7783 -10.7905 -5.1256 47 1 2.3260 -5.6063 -1.8113 48 1 0.8600 -4.6138 -1.6210 49 1 3.3165 -4.6017 0.1920 50 1 2.8026 -3.3019 -0.9122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328207973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:58 Heat of formation + Delta-G solvation = -95.455510 kcal Electronic energy + Delta-G solvation = -31489.845001 eV Core-core repulsion = 27324.629048 eV Total energy + Delta-G solvation = -4165.215953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46287 -40.11318 -38.74169 -36.61200 -35.89622 -34.35657 -34.24698 -32.38455 -31.64347 -30.80880 -30.17190 -27.52889 -27.12593 -25.51613 -23.69128 -23.67064 -22.69047 -21.80719 -20.65963 -19.47784 -19.01038 -18.15520 -17.73281 -17.02350 -16.81997 -16.27086 -15.90108 -15.58328 -15.29527 -15.03354 -14.71122 -14.67313 -14.46098 -14.14911 -14.02989 -13.80880 -13.66555 -13.40386 -13.23991 -12.78225 -12.69954 -12.57253 -12.40305 -12.31177 -12.13666 -12.00009 -11.74036 -11.55937 -11.50312 -11.41997 -11.32910 -11.27780 -11.01108 -10.43268 -10.40142 -10.30090 -9.89977 -9.74495 -9.66230 -9.06125 -8.97024 -8.78162 -7.40908 -5.89457 -3.27285 2.16187 2.27720 2.54996 2.85267 3.18292 3.24707 3.33001 3.91297 4.08477 4.12941 4.24161 4.28882 4.39917 4.44215 4.54010 4.67568 4.71488 4.82179 4.90621 4.93702 5.12288 5.14273 5.19030 5.21504 5.28374 5.32696 5.35739 5.39235 5.40822 5.48421 5.50357 5.57092 5.64385 5.71836 5.76867 5.82557 5.87375 5.99175 6.01383 6.13510 6.29997 6.43123 6.50512 7.03720 7.14590 7.73703 7.78878 7.86736 7.88919 8.27822 9.04436 9.76151 9.93429 11.28771 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.002874 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.597331 B = 9741.646963 C =10419.164908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.587 5.587 3 C 0.518 3.482 4 O -0.552 6.552 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.129 4.129 8 C 0.125 3.875 9 H 0.100 0.900 10 C 0.506 3.494 11 O -0.530 6.530 12 N -0.600 5.600 13 C 0.118 3.882 14 C -0.116 4.116 15 C 0.126 3.874 16 O -0.557 6.557 17 C 0.133 3.867 18 N -0.752 5.752 19 C -0.248 4.248 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.931 5.931 23 Si 0.885 3.115 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.279 1.279 27 C -0.161 4.161 28 C 0.106 3.894 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.378 0.622 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.356 0.644 46 H 0.261 0.739 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 19.252 10.413 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.320 5.320 3 C 0.307 3.693 4 O -0.431 6.431 5 C -0.175 4.175 6 C -0.160 4.160 7 C -0.167 4.167 8 C 0.018 3.982 9 H 0.118 0.882 10 C 0.292 3.708 11 O -0.407 6.407 12 N -0.334 5.334 13 C -0.004 4.004 14 C -0.154 4.154 15 C 0.085 3.915 16 O -0.364 6.364 17 C 0.006 3.994 18 N -0.399 5.399 19 C -0.377 4.377 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.578 5.578 23 Si 0.715 3.285 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.200 4.200 28 C -0.017 4.017 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.226 0.774 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.189 0.811 46 H 0.071 0.929 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.761 20.087 11.254 23.734 hybrid contribution 1.566 -0.359 -0.858 1.822 sum 7.327 19.728 10.395 23.472 Atomic orbital electron populations 1.21775 0.78708 1.02443 1.03281 1.46925 1.07907 1.04528 1.72619 1.20141 0.90979 0.82375 0.75787 1.90722 1.66575 1.35355 1.50411 1.21690 0.90953 0.99782 1.05078 1.21672 1.00604 0.92971 1.00702 1.21908 0.91966 1.01155 1.01677 1.21028 0.93339 0.84041 0.99815 0.88245 1.20640 0.82147 0.82751 0.85246 1.90713 1.38641 1.76490 1.34813 1.48131 1.46769 1.04975 1.33512 1.21562 0.96638 0.90092 0.92083 1.21844 0.97194 0.98108 0.98301 1.21377 0.87908 0.91278 0.90955 1.86423 1.39585 1.72622 1.37742 1.21295 0.93086 0.93571 0.91465 1.42632 1.07391 1.46640 1.43272 1.19021 0.96660 1.11113 1.10935 0.89155 1.24700 0.97634 0.98399 0.98294 1.69691 1.34757 1.28599 1.24777 0.86570 0.86740 0.77737 0.77425 1.20868 1.21579 1.20591 1.22586 1.01510 0.97366 0.98509 1.21869 0.93302 0.97314 0.89210 0.90969 0.90429 0.91883 0.88073 0.87868 0.89661 0.90558 0.90025 0.88774 0.89176 0.90391 0.89578 0.90227 0.77402 0.94374 0.94789 0.81052 0.92894 0.89505 0.90292 0.90190 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 8.70 59.85 0.52 1.44 16 2 N -0.59 -6.33 2.96 -176.50 -0.52 -6.85 16 3 C 0.52 5.88 7.47 -11.87 -0.09 5.79 16 4 O -0.55 -8.39 16.18 5.55 0.09 -8.30 16 5 C -0.14 -0.95 6.03 -28.10 -0.17 -1.12 16 6 C -0.12 -0.60 6.03 -26.52 -0.16 -0.76 16 7 C -0.13 -0.80 5.11 -26.58 -0.14 -0.93 16 8 C 0.13 1.08 2.25 -69.52 -0.16 0.92 16 9 H 0.10 0.71 6.50 -51.93 -0.34 0.38 16 10 C 0.51 5.52 6.16 -10.99 -0.07 5.45 16 11 O -0.53 -7.51 13.81 5.55 0.08 -7.44 16 12 N -0.60 -6.04 2.98 -172.77 -0.51 -6.55 16 13 C 0.12 1.28 6.19 -3.71 -0.02 1.26 16 14 C -0.12 -1.32 5.11 -26.61 -0.14 -1.45 16 15 C 0.13 1.64 0.71 -90.58 -0.06 1.58 16 16 O -0.56 -7.47 11.70 -35.23 -0.41 -7.88 16 17 C 0.13 2.30 5.40 -4.04 -0.02 2.28 16 18 N -0.75 -15.86 4.87 -59.91 -0.29 -16.15 16 19 C -0.25 -6.58 10.47 -15.06 -0.16 -6.74 16 20 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 23 Si 0.89 20.26 27.74 -169.99 -4.71 15.54 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -5.70 6.52 56.52 0.37 -5.34 16 27 C -0.16 -1.84 4.93 -26.63 -0.13 -1.98 16 28 C 0.11 0.93 5.47 -3.71 -0.02 0.91 16 29 H 0.07 0.93 6.97 -51.93 -0.36 0.57 16 30 H 0.08 0.91 7.13 -51.93 -0.37 0.54 16 31 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 36 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.09 0.44 7.15 -51.93 -0.37 0.06 16 38 H 0.09 1.03 7.01 -51.93 -0.36 0.67 16 39 H 0.08 0.86 7.81 -51.93 -0.41 0.46 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.38 4.84 7.86 45.56 0.36 5.20 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.36 7.00 3.44 -40.82 -0.14 6.86 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 47 H 0.09 1.10 6.82 -51.93 -0.35 0.75 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.08 0.67 7.81 -51.93 -0.41 0.27 16 50 H 0.08 0.54 5.05 -51.93 -0.26 0.27 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -34.46 379.50 -7.94 -42.40 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.23 Total: 10.16 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -0.91 Total: 6.70 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.55 Total: -56.91 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.25 Total: -23.61 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.71 Total: 15.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.46 -7.94 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328207973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.060 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds