Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00289 * 2 1 4 4 O 1.21287 * 119.99736 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00630 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47426 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46894 * 180.02562 * 6 5 3 8 8 N 1.46499 * 109.46833 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00164 * 269.99432 * 8 7 6 10 10 C 1.34784 * 119.99944 * 89.99704 * 8 7 6 11 11 O 1.21347 * 120.00360 * 5.00738 * 10 8 7 12 12 C 1.49452 * 119.99973 * 185.00438 * 10 8 7 13 13 O 1.21351 * 119.99857 * 275.42021 * 12 10 8 14 14 N 1.34773 * 119.99931 * 95.13558 * 12 10 8 15 15 C 1.46923 * 120.63321 * 355.22523 * 14 12 10 16 16 C 1.53188 * 108.77654 * 233.58242 * 15 14 12 17 17 C 1.53039 * 109.31423 * 305.36326 * 16 15 14 18 18 C 1.53045 * 109.53908 * 61.36339 * 17 16 15 19 19 H 1.09001 * 109.49638 * 58.58545 * 18 17 16 20 20 C 1.50696 * 109.49874 * 178.68470 * 18 17 16 21 21 H 1.07999 * 119.99719 * 0.02562 * 20 18 17 22 22 C 1.37875 * 120.00118 * 179.97438 * 20 18 17 23 23 N 1.31514 * 119.99877 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 120.00252 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47224 * 59.99915 * 24 22 20 26 26 H 1.48494 * 109.47039 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46916 * 300.00118 * 24 22 20 28 28 C 1.46925 * 120.63022 * 174.94105 * 14 12 10 29 29 H 1.08997 * 109.46733 * 299.99130 * 1 2 3 30 30 H 1.08998 * 109.47086 * 59.99892 * 1 2 3 31 31 H 1.09006 * 109.46867 * 179.97438 * 1 2 3 32 32 H 0.97008 * 119.99987 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47115 * 59.99794 * 5 3 2 34 34 H 1.09003 * 109.46709 * 300.00474 * 5 3 2 35 35 H 1.08997 * 109.47591 * 59.99535 * 6 5 3 36 36 H 1.09003 * 109.47114 * 299.99675 * 6 5 3 37 37 H 1.08991 * 109.47542 * 59.99712 * 7 6 5 38 38 H 1.08998 * 109.47239 * 299.99060 * 7 6 5 39 39 H 1.08995 * 109.47435 * 264.81196 * 9 8 7 40 40 H 1.09003 * 109.47207 * 24.81598 * 9 8 7 41 41 H 1.08999 * 109.47324 * 144.81445 * 9 8 7 42 42 H 1.09001 * 109.58606 * 353.36959 * 15 14 12 43 43 H 1.09001 * 109.58641 * 113.64946 * 15 14 12 44 44 H 1.09003 * 109.49757 * 65.31571 * 16 15 14 45 45 H 1.09002 * 109.50153 * 185.41105 * 16 15 14 46 46 H 1.09003 * 109.46248 * 181.38733 * 17 16 15 47 47 H 1.09002 * 109.45826 * 301.35931 * 17 16 15 48 48 H 0.96998 * 119.99997 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58820 * 246.20476 * 28 14 12 50 50 H 1.09003 * 109.58954 * 6.62948 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6097 0.0002 7 6 5.6859 2.6096 -0.0011 8 7 6.1742 3.9908 -0.0009 9 6 6.4174 4.6819 -1.2695 10 6 6.3997 4.6258 1.1664 11 8 6.2859 4.0261 2.2152 12 6 6.7900 6.0685 1.1691 13 8 7.9532 6.3826 1.0245 14 7 5.8493 7.0207 1.3263 15 6 4.4257 6.6632 1.3916 16 6 3.6625 7.4856 0.3487 17 6 3.9477 8.9729 0.5692 18 6 5.4446 9.2387 0.3929 19 1 5.7528 8.9337 -0.6072 20 6 5.7197 10.7087 0.5784 21 1 4.9084 11.3860 0.8004 22 6 7.0073 11.1886 0.4658 23 7 7.9953 10.3636 0.1959 24 14 7.3485 13.0106 0.6964 25 1 6.9296 13.4240 2.0599 26 1 8.8010 13.2678 0.5251 27 1 6.5861 13.7886 -0.3128 28 6 6.2284 8.4355 1.4419 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.0089 0.6536 -0.8908 34 1 4.0096 0.6531 0.8891 35 1 3.7929 3.1230 0.8906 36 1 3.7923 3.1241 -0.8894 37 1 6.0485 2.0965 -0.8916 38 1 6.0499 2.0952 0.8883 39 1 7.4695 4.5881 -1.5386 40 1 5.8015 4.2356 -2.0503 41 1 6.1622 5.7363 -1.1637 42 1 4.3056 5.6010 1.1787 43 1 4.0393 6.8823 2.3870 44 1 3.9875 7.1972 -0.6510 45 1 2.5931 7.3012 0.4514 46 1 3.3864 9.5619 -0.1561 47 1 3.6454 9.2549 1.5778 48 1 8.9011 10.7013 0.1163 49 1 5.9852 8.7986 2.4406 50 1 7.2981 8.5431 1.2622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329688159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -111.783369 kcal Electronic energy + Delta-G solvation = -30794.420746 eV Core-core repulsion = 26628.496764 eV Total energy + Delta-G solvation = -4165.923982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56717 -39.93443 -38.48408 -36.72214 -36.11450 -34.94016 -33.55466 -33.35677 -31.82560 -29.86914 -28.93181 -26.94166 -26.65231 -25.17248 -24.92700 -23.00151 -21.86417 -21.40728 -20.67217 -19.45731 -18.47779 -17.60848 -17.34134 -16.70244 -16.30567 -16.13755 -16.09547 -15.94455 -15.03264 -14.75489 -14.50175 -14.44592 -14.03075 -13.86555 -13.71962 -13.36726 -13.21554 -12.98203 -12.80550 -12.75036 -12.63199 -12.54479 -12.29959 -12.20859 -12.02634 -11.92303 -11.84757 -11.02647 -11.00807 -10.95453 -10.89012 -10.54049 -10.39582 -10.25920 -10.20200 -9.92528 -9.51215 -9.24209 -9.14808 -8.89876 -8.76456 -8.46112 -7.88161 -6.01699 -4.10272 2.34696 2.36199 2.53271 2.88495 3.12097 3.32100 3.38155 3.39447 3.73713 4.36524 4.41690 4.51821 4.66167 4.70856 4.81424 5.03687 5.09183 5.13447 5.18609 5.24441 5.28008 5.30684 5.38639 5.42451 5.47867 5.55184 5.66942 5.79186 5.84961 5.97012 6.01028 6.08709 6.16442 6.29775 6.37586 6.56537 6.62244 6.81567 6.93764 7.04054 7.07904 7.13290 7.15071 7.56352 7.81046 7.89894 7.91653 7.96473 8.08281 8.33476 8.54543 8.93303 9.55485 11.03777 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.002645 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.007657 B =10582.366303 C =11532.822539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.533 6.533 5 C -0.137 4.137 6 C -0.122 4.122 7 C 0.113 3.887 8 N -0.605 5.605 9 C 0.075 3.925 10 C 0.520 3.480 11 O -0.521 6.521 12 C 0.505 3.495 13 O -0.511 6.511 14 N -0.585 5.585 15 C 0.108 3.892 16 C -0.130 4.130 17 C -0.112 4.112 18 C 0.043 3.957 19 H 0.031 0.969 20 C -0.521 4.521 21 H 0.059 0.941 22 C 0.063 3.937 23 N -0.881 5.881 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.110 3.890 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.402 0.598 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.265 0.735 49 H 0.048 0.952 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 -23.007 -3.774 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.296 3.704 4 O -0.408 6.408 5 C -0.177 4.177 6 C -0.161 4.161 7 C -0.009 4.009 8 N -0.340 5.340 9 C -0.068 4.068 10 C 0.303 3.697 11 O -0.395 6.395 12 C 0.286 3.714 13 O -0.386 6.386 14 N -0.319 5.319 15 C -0.015 4.015 16 C -0.168 4.168 17 C -0.149 4.149 18 C 0.024 3.976 19 H 0.049 0.951 20 C -0.560 4.560 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.518 5.518 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.010 4.010 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.235 0.765 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.566 -22.356 -3.310 24.947 hybrid contribution 0.322 0.425 0.097 0.542 sum -10.244 -21.931 -3.212 24.418 Atomic orbital electron populations 1.21531 0.79706 1.02103 1.02447 1.45854 1.07826 1.08834 1.76812 1.20807 0.90483 0.83530 0.75553 1.90750 1.70524 1.31223 1.48326 1.21579 0.91596 0.99896 1.04640 1.21735 0.94901 0.94965 1.04538 1.21525 0.93498 0.82310 1.03610 1.47845 1.65357 1.14339 1.06445 1.21925 1.02035 0.98388 0.84457 1.20802 0.76075 0.88851 0.83961 1.90733 1.50426 1.67238 1.31127 1.19978 0.86850 0.85563 0.79019 1.90826 1.17843 1.81111 1.48848 1.48583 1.05475 1.08896 1.68956 1.21700 0.81271 0.98459 1.00080 1.21923 0.98729 0.97696 0.98477 1.21652 1.00006 0.92614 1.00672 1.19034 0.88726 0.94861 0.95003 0.95105 1.21032 0.93286 0.92054 1.49593 0.92302 1.25055 0.96401 0.97808 0.94747 1.69865 1.00141 1.34333 1.47479 0.86636 0.77148 0.85403 0.78700 1.20227 1.21267 1.20277 1.22574 1.05579 0.73717 0.99117 0.92197 0.92230 0.90758 0.76506 0.88625 0.88488 0.90524 0.90635 0.90071 0.89482 0.91654 0.90336 0.90423 0.91581 0.91402 0.92078 0.91808 0.92751 0.93017 0.92531 0.93341 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.85 0.64 1.12 16 2 N -0.74 -4.41 5.71 -67.08 -0.38 -4.79 16 3 C 0.51 4.69 7.83 -10.99 -0.09 4.60 16 4 O -0.53 -7.46 15.98 5.55 0.09 -7.37 16 5 C -0.14 -0.90 5.70 -27.88 -0.16 -1.06 16 6 C -0.12 -1.20 4.83 -26.73 -0.13 -1.33 16 7 C 0.11 1.13 5.42 -4.04 -0.02 1.11 16 8 N -0.60 -8.31 2.87 -182.09 -0.52 -8.84 16 9 C 0.07 0.92 10.23 59.85 0.61 1.53 16 10 C 0.52 9.41 5.47 -11.58 -0.06 9.35 16 11 O -0.52 -10.33 16.65 5.50 0.09 -10.24 16 12 C 0.51 10.77 5.69 -11.59 -0.07 10.70 16 13 O -0.51 -12.75 16.52 5.50 0.09 -12.66 16 14 N -0.59 -12.16 2.97 -173.01 -0.51 -12.68 16 15 C 0.11 1.86 6.32 -3.71 -0.02 1.84 16 16 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 17 C -0.11 -2.20 5.10 -26.69 -0.14 -2.34 16 18 C 0.04 1.04 2.26 -91.43 -0.21 0.83 16 19 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.52 -13.87 8.56 -34.44 -0.29 -14.17 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.88 -25.24 11.41 55.43 0.63 -24.61 16 24 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 C 0.11 2.65 5.44 -3.49 -0.02 2.63 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.40 1.04 8.83 -40.82 -0.36 0.68 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.09 0.93 7.36 -51.93 -0.38 0.55 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.69 8.03 -51.93 -0.42 0.28 16 41 H 0.08 1.15 6.99 -51.93 -0.36 0.79 16 42 H 0.07 1.06 6.37 -51.93 -0.33 0.73 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.12 3.47 5.14 -51.93 -0.27 3.21 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -35.69 406.80 -8.03 -43.72 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.42 Total: 1.13 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -0.21 Total: 14.13 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.79 Total: -50.91 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: 0.27 Total: -30.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.69 -8.03 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329688159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.064 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds