Wall clock time and date at job start Sat Apr 11 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00289 * 2 1 4 4 O 1.21287 * 119.99736 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00630 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47426 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46894 * 180.02562 * 6 5 3 8 8 N 1.46499 * 109.46833 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00164 * 269.99432 * 8 7 6 10 10 C 1.34784 * 119.99944 * 89.99704 * 8 7 6 11 11 O 1.21347 * 120.00360 * 5.00738 * 10 8 7 12 12 C 1.49452 * 119.99973 * 185.00438 * 10 8 7 13 13 O 1.21351 * 119.99857 * 275.42021 * 12 10 8 14 14 N 1.34773 * 119.99931 * 95.13558 * 12 10 8 15 15 C 1.46923 * 120.63321 * 355.22523 * 14 12 10 16 16 C 1.53188 * 108.77654 * 233.58242 * 15 14 12 17 17 C 1.53039 * 109.31423 * 305.36326 * 16 15 14 18 18 C 1.53045 * 109.53908 * 61.36339 * 17 16 15 19 19 H 1.09001 * 109.49638 * 58.58545 * 18 17 16 20 20 C 1.50696 * 109.49874 * 178.68470 * 18 17 16 21 21 H 1.07999 * 119.99719 * 0.02562 * 20 18 17 22 22 C 1.37875 * 120.00118 * 179.97438 * 20 18 17 23 23 N 1.31514 * 119.99877 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 120.00252 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47224 * 59.99915 * 24 22 20 26 26 H 1.48494 * 109.47039 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46916 * 300.00118 * 24 22 20 28 28 C 1.46925 * 120.63022 * 174.94105 * 14 12 10 29 29 H 1.08997 * 109.46733 * 299.99130 * 1 2 3 30 30 H 1.08998 * 109.47086 * 59.99892 * 1 2 3 31 31 H 1.09006 * 109.46867 * 179.97438 * 1 2 3 32 32 H 0.97008 * 119.99987 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47115 * 59.99794 * 5 3 2 34 34 H 1.09003 * 109.46709 * 300.00474 * 5 3 2 35 35 H 1.08997 * 109.47591 * 59.99535 * 6 5 3 36 36 H 1.09003 * 109.47114 * 299.99675 * 6 5 3 37 37 H 1.08991 * 109.47542 * 59.99712 * 7 6 5 38 38 H 1.08998 * 109.47239 * 299.99060 * 7 6 5 39 39 H 1.08995 * 109.47435 * 264.81196 * 9 8 7 40 40 H 1.09003 * 109.47207 * 24.81598 * 9 8 7 41 41 H 1.08999 * 109.47324 * 144.81445 * 9 8 7 42 42 H 1.09001 * 109.58606 * 353.36959 * 15 14 12 43 43 H 1.09001 * 109.58641 * 113.64946 * 15 14 12 44 44 H 1.09003 * 109.49757 * 65.31571 * 16 15 14 45 45 H 1.09002 * 109.50153 * 185.41105 * 16 15 14 46 46 H 1.09003 * 109.46248 * 181.38733 * 17 16 15 47 47 H 1.09002 * 109.45826 * 301.35931 * 17 16 15 48 48 H 0.96998 * 119.99997 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58820 * 246.20476 * 28 14 12 50 50 H 1.09003 * 109.58954 * 6.62948 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6097 0.0002 7 6 5.6859 2.6096 -0.0011 8 7 6.1742 3.9908 -0.0009 9 6 6.4174 4.6819 -1.2695 10 6 6.3997 4.6258 1.1664 11 8 6.2859 4.0261 2.2152 12 6 6.7900 6.0685 1.1691 13 8 7.9532 6.3826 1.0245 14 7 5.8493 7.0207 1.3263 15 6 4.4257 6.6632 1.3916 16 6 3.6625 7.4856 0.3487 17 6 3.9477 8.9729 0.5692 18 6 5.4446 9.2387 0.3929 19 1 5.7528 8.9337 -0.6072 20 6 5.7197 10.7087 0.5784 21 1 4.9084 11.3860 0.8004 22 6 7.0073 11.1886 0.4658 23 7 7.9953 10.3636 0.1959 24 14 7.3485 13.0106 0.6964 25 1 6.9296 13.4240 2.0599 26 1 8.8010 13.2678 0.5251 27 1 6.5861 13.7886 -0.3128 28 6 6.2284 8.4355 1.4419 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.0089 0.6536 -0.8908 34 1 4.0096 0.6531 0.8891 35 1 3.7929 3.1230 0.8906 36 1 3.7923 3.1241 -0.8894 37 1 6.0485 2.0965 -0.8916 38 1 6.0499 2.0952 0.8883 39 1 7.4695 4.5881 -1.5386 40 1 5.8015 4.2356 -2.0503 41 1 6.1622 5.7363 -1.1637 42 1 4.3056 5.6010 1.1787 43 1 4.0393 6.8823 2.3870 44 1 3.9875 7.1972 -0.6510 45 1 2.5931 7.3012 0.4514 46 1 3.3864 9.5619 -0.1561 47 1 3.6454 9.2549 1.5778 48 1 8.9011 10.7013 0.1163 49 1 5.9852 8.7986 2.4406 50 1 7.2981 8.5431 1.2622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329688159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:05 Heat of formation + Delta-G solvation = -138.173617 kcal Electronic energy + Delta-G solvation = -30795.565113 eV Core-core repulsion = 26628.496764 eV Total energy + Delta-G solvation = -4167.068349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03959 -40.66416 -39.99415 -38.44399 -37.28292 -35.56511 -35.34109 -34.35317 -33.56064 -31.67547 -29.70421 -28.18859 -27.63820 -26.95136 -26.24562 -24.21341 -23.53055 -22.51586 -21.29517 -21.10371 -19.89075 -18.89606 -18.44547 -18.21244 -17.89471 -17.42660 -16.90533 -16.79558 -16.57165 -16.15174 -15.83099 -15.76421 -15.29101 -15.19303 -14.98806 -14.66224 -14.50048 -14.37931 -14.19949 -13.98228 -13.87249 -13.64592 -13.43482 -13.25298 -12.99996 -12.86745 -12.80738 -12.73004 -12.63418 -12.50434 -12.32801 -12.27762 -11.90036 -11.69536 -11.66220 -11.12270 -10.98634 -10.94243 -10.59262 -10.50744 -10.08243 -9.93886 -9.64743 -8.10792 -6.26953 0.92995 1.07893 1.42935 1.44172 1.52118 1.55473 1.70145 2.24052 2.41968 2.45571 3.10691 3.18284 3.80842 3.84449 3.97036 4.00762 4.03874 4.16133 4.23421 4.39455 4.46191 4.48722 4.50637 4.56984 4.63849 4.64052 4.68037 4.70206 4.74867 4.79865 4.81162 4.97896 5.03689 5.08796 5.14865 5.20433 5.21174 5.28358 5.39617 5.41033 5.51933 5.57851 5.84364 5.88822 5.93566 6.27951 6.31935 6.60960 6.62705 6.80265 6.87925 7.34327 7.42899 8.92855 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.002645 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.007657 B =10582.366303 C =11532.822539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.502 3.498 4 O -0.591 6.591 5 C -0.127 4.127 6 C -0.116 4.116 7 C 0.111 3.889 8 N -0.590 5.590 9 C 0.072 3.928 10 C 0.525 3.475 11 O -0.543 6.543 12 C 0.497 3.503 13 O -0.560 6.560 14 N -0.586 5.586 15 C 0.106 3.894 16 C -0.120 4.120 17 C -0.105 4.105 18 C 0.044 3.956 19 H -0.002 1.002 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 0.956 3.044 25 H -0.270 1.270 26 H -0.289 1.289 27 H -0.268 1.268 28 C 0.121 3.879 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.421 0.579 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.123 0.877 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.261 0.739 49 H 0.042 0.958 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 -25.451 -4.701 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.290 3.710 4 O -0.471 6.471 5 C -0.167 4.167 6 C -0.155 4.155 7 C -0.010 4.010 8 N -0.323 5.323 9 C -0.071 4.071 10 C 0.307 3.693 11 O -0.421 6.421 12 C 0.280 3.720 13 O -0.438 6.438 14 N -0.318 5.318 15 C -0.015 4.015 16 C -0.157 4.157 17 C -0.143 4.143 18 C 0.024 3.976 19 H 0.016 0.984 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.188 4.188 23 N -0.552 5.552 24 Si 0.782 3.218 25 H -0.195 1.195 26 H -0.215 1.215 27 H -0.192 1.192 28 C 0.000 4.000 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.258 0.742 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.142 0.858 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.351 -24.883 -4.268 28.106 hybrid contribution 0.816 1.108 0.342 1.418 sum -11.535 -23.774 -3.927 26.715 Atomic orbital electron populations 1.21621 0.79535 1.04006 1.01047 1.45784 1.08113 1.08955 1.75015 1.21326 0.91641 0.83411 0.74665 1.90728 1.71763 1.33333 1.51308 1.21571 0.89606 0.98115 1.07433 1.21614 0.94394 0.96936 1.02601 1.21885 0.93627 0.79810 1.05658 1.47932 1.63364 1.15691 1.05327 1.22079 1.03187 0.97058 0.84730 1.20108 0.76846 0.87163 0.85195 1.90721 1.52190 1.67020 1.32123 1.20699 0.86192 0.87341 0.77800 1.90785 1.19811 1.82338 1.50895 1.48575 1.07221 1.07665 1.68351 1.21936 0.78986 0.99537 1.01091 1.21861 1.00692 0.95025 0.98164 1.21537 0.96483 0.95128 1.01138 1.18949 0.91866 0.93737 0.93001 0.98383 1.21454 0.93440 0.93548 1.48908 0.91864 1.25863 0.96342 1.01983 0.94607 1.70051 1.00243 1.36123 1.48775 0.85632 0.76755 0.80427 0.78991 1.19478 1.21511 1.19247 1.22077 1.03259 0.76061 0.98630 0.93863 0.93457 0.87180 0.74240 0.84725 0.86557 0.94036 0.91136 0.85550 0.89831 0.91425 0.85849 0.93426 0.90049 0.90313 0.92017 0.88207 0.92117 0.92534 0.93024 0.93961 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.70 127.77 1.37 2.14 16 2 N -0.73 -6.70 5.71 -484.52 -2.77 -9.47 16 3 C 0.50 8.18 7.83 87.66 0.69 8.87 16 4 O -0.59 -16.25 15.98 -3.05 -0.05 -16.30 16 5 C -0.13 -1.21 5.70 29.85 0.17 -1.04 16 6 C -0.12 -1.99 4.83 30.59 0.15 -1.84 16 7 C 0.11 1.86 5.42 86.38 0.47 2.32 16 8 N -0.59 -15.36 2.87 -848.37 -2.44 -17.79 16 9 C 0.07 1.66 10.23 127.77 1.31 2.96 16 10 C 0.52 19.05 5.47 87.27 0.48 19.53 16 11 O -0.54 -21.57 16.65 -3.24 -0.05 -21.63 16 12 C 0.50 22.03 5.69 87.27 0.50 22.53 16 13 O -0.56 -29.61 16.52 -3.25 -0.05 -29.67 16 14 N -0.59 -25.12 2.97 -819.65 -2.43 -27.56 16 15 C 0.11 3.60 6.32 86.36 0.55 4.14 16 16 C -0.12 -3.77 6.08 30.67 0.19 -3.59 16 17 C -0.11 -4.08 5.10 30.62 0.16 -3.93 16 18 C 0.04 2.18 2.26 -11.32 -0.03 2.15 16 19 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 20 C -0.54 -29.09 8.56 25.60 0.22 -28.87 16 21 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 22 C 0.01 0.66 5.30 84.65 0.45 1.10 16 23 N -0.91 -54.75 11.41 21.45 0.24 -54.50 16 24 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 28 C 0.12 6.13 5.44 86.51 0.47 6.60 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.42 0.59 8.83 -92.70 -0.82 -0.23 16 33 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 37 H 0.13 1.07 8.07 -2.39 -0.02 1.05 16 38 H 0.08 1.55 7.36 -2.39 -0.02 1.53 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.12 1.75 8.03 -2.39 -0.02 1.73 16 41 H 0.05 1.42 6.99 -2.39 -0.02 1.40 16 42 H 0.08 2.53 6.37 -2.39 -0.02 2.52 16 43 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 50 H 0.08 5.00 5.14 -2.39 -0.01 4.98 16 Total: -1.00 -84.55 406.80 1.72 -82.83 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.12 Total: 14.94 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 7.12 Total: 33.09 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -7.39 Total: -109.32 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -0.16 Total: -67.59 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -84.55 1.72 -82.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329688159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.341 kcal (2) G-P(sol) polarization free energy of solvation -84.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds