Wall clock time and date at job start Sat Apr 11 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00064 * 2 1 4 4 O 1.21287 * 120.00185 * 0.27896 * 3 2 1 5 5 C 1.50703 * 120.00231 * 180.27438 * 3 2 1 6 6 C 1.52994 * 109.47124 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47155 * 179.97438 * 6 5 3 8 8 C 1.50693 * 109.47301 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00139 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00122 * 180.02562 * 8 7 6 11 11 C 1.47481 * 125.65766 * 359.68798 * 10 8 7 12 12 C 1.55261 * 104.77925 * 155.91521 * 11 10 8 13 13 C 1.54516 * 101.42560 * 36.67800 * 12 11 10 14 14 C 1.47179 * 125.66186 * 179.97438 * 10 8 7 15 15 C 1.52518 * 110.05700 * 206.73709 * 13 12 11 16 16 N 1.47304 * 108.41312 * 287.85032 * 15 13 12 17 17 C 1.36940 * 121.06205 * 130.60385 * 16 15 13 18 18 H 1.08004 * 119.99893 * 333.73575 * 17 16 15 19 19 C 1.38813 * 119.99891 * 153.73030 * 17 16 15 20 20 N 1.31617 * 119.99855 * 159.46718 * 19 17 16 21 21 Si 1.86804 * 119.99964 * 339.46477 * 19 17 16 22 22 H 1.48504 * 109.46721 * 92.00213 * 21 19 17 23 23 H 1.48498 * 109.46982 * 211.99840 * 21 19 17 24 24 H 1.48496 * 109.47031 * 332.00267 * 21 19 17 25 25 C 1.47159 * 117.87781 * 310.63715 * 16 15 13 26 26 C 1.53279 * 108.54506 * 51.12816 * 25 16 15 27 27 O 1.42061 * 110.33965 * 83.75207 * 13 12 11 28 28 H 1.09001 * 109.47026 * 59.72258 * 1 2 3 29 29 H 1.08997 * 109.47294 * 179.72088 * 1 2 3 30 30 H 1.08994 * 109.47200 * 299.72505 * 1 2 3 31 31 H 0.96999 * 120.00019 * 180.28072 * 2 1 3 32 32 H 1.08998 * 109.47017 * 300.00097 * 5 3 2 33 33 H 1.09002 * 109.46535 * 60.00138 * 5 3 2 34 34 H 1.09001 * 109.47459 * 300.00331 * 6 5 3 35 35 H 1.09002 * 109.47596 * 60.00428 * 6 5 3 36 36 H 1.09001 * 109.47210 * 300.00487 * 7 6 5 37 37 H 1.09003 * 109.47017 * 59.99925 * 7 6 5 38 38 H 1.08993 * 110.35541 * 274.86794 * 11 10 8 39 39 H 1.08994 * 110.35456 * 37.16155 * 11 10 8 40 40 H 1.08996 * 111.21915 * 278.58615 * 12 11 10 41 41 H 1.08996 * 110.94100 * 154.65162 * 12 11 10 42 42 H 1.09000 * 109.91501 * 300.84373 * 14 10 8 43 43 H 1.09005 * 109.91020 * 62.11339 * 14 10 8 44 44 H 1.08998 * 109.67722 * 47.58583 * 15 13 12 45 45 H 1.09003 * 109.67493 * 168.12439 * 15 13 12 46 46 H 0.96997 * 120.00010 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.61873 * 291.41695 * 25 16 15 48 48 H 1.08995 * 109.78571 * 170.94112 * 25 16 15 49 49 H 1.08997 * 109.51794 * 187.15784 * 26 25 16 50 50 H 1.09004 * 109.51229 * 67.00786 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0051 5 6 3.6459 1.1672 -0.0062 6 6 4.1559 2.6097 -0.0043 7 6 5.6859 2.6097 -0.0100 8 6 6.1882 4.0304 -0.0074 9 8 5.4001 4.9523 -0.0020 10 7 7.5133 4.2768 -0.0121 11 6 8.5776 3.2558 -0.0133 12 6 9.8103 3.9693 -0.6313 13 6 9.6594 5.3951 -0.0551 14 6 8.1384 5.6092 -0.0108 15 6 10.3157 6.4082 -0.9873 16 7 11.7773 6.2576 -0.8832 17 6 12.5579 6.1479 -2.0029 18 1 12.1390 5.7529 -2.9167 19 6 13.8876 6.5447 -1.9637 20 7 14.7370 6.0890 -2.8598 21 14 14.4712 7.7255 -0.6390 22 1 14.9696 6.9535 0.5275 23 1 15.5666 8.5712 -1.1775 24 1 13.3413 8.5903 -0.2141 25 6 12.3718 6.2279 0.4627 26 6 11.6221 5.1889 1.3040 27 8 10.2185 5.4623 1.2491 28 1 -0.3633 0.5181 -0.8875 29 1 -0.3634 -1.0276 -0.0050 30 1 -0.3633 0.5095 0.8924 31 1 1.9500 -0.8400 -0.0041 32 1 4.0129 0.6512 0.8810 33 1 4.0055 0.6555 -0.8990 34 1 3.7888 3.1261 -0.8912 35 1 3.7963 3.1210 0.8887 36 1 6.0526 2.0934 0.8772 37 1 6.0459 2.0983 -0.9027 38 1 8.7943 2.9328 1.0049 39 1 8.2854 2.4044 -0.6279 40 1 9.7553 3.9799 -1.7198 41 1 10.7378 3.5073 -0.2934 42 1 7.8168 6.1710 -0.8878 43 1 7.8658 6.1463 0.8977 44 1 9.9996 6.2212 -2.0136 45 1 10.0289 7.4177 -0.6926 46 1 15.6662 6.3659 -2.8321 47 1 12.2785 7.2103 0.9257 48 1 13.4245 5.9536 0.3950 49 1 11.9634 5.2425 2.3378 50 1 11.8145 4.1919 0.9076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330159616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:06 Heat of formation + Delta-G solvation = -84.502599 kcal Electronic energy + Delta-G solvation = -29992.343821 eV Core-core repulsion = 25827.602823 eV Total energy + Delta-G solvation = -4164.740999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48758 -39.98889 -38.96937 -36.38010 -35.05158 -34.67671 -34.45066 -31.99859 -31.44674 -29.77579 -29.60532 -27.86312 -26.84695 -25.70085 -23.59168 -23.15084 -22.27944 -21.47576 -20.67126 -19.40942 -19.03688 -17.71411 -17.09879 -16.94354 -16.61661 -16.28792 -16.12919 -15.65913 -15.51934 -15.18886 -14.69220 -14.53862 -14.16522 -14.12819 -13.93164 -13.72522 -13.44665 -13.12153 -12.82767 -12.72944 -12.55404 -12.52277 -12.38529 -12.21147 -12.03526 -11.92382 -11.66250 -11.57846 -11.23202 -11.10268 -11.00287 -10.79763 -10.42729 -10.31087 -10.24663 -9.80182 -9.75625 -9.57347 -9.54838 -9.43302 -8.63406 -8.60118 -7.08252 -6.04391 -3.41419 2.31388 2.66015 2.75365 3.02683 3.23673 3.43075 3.46067 3.95403 4.31596 4.35444 4.43945 4.62252 4.66348 4.69337 4.75286 4.79261 5.01185 5.03036 5.07494 5.13456 5.17787 5.25754 5.28003 5.32467 5.35066 5.39420 5.50292 5.58387 5.66193 5.76522 5.83080 5.89003 5.93351 5.94804 6.03291 6.09127 6.16507 6.21929 6.25401 6.33932 6.41853 6.43290 6.64435 7.04727 7.52421 7.63104 7.78131 7.86903 8.18502 8.20805 8.78484 9.59853 9.95899 11.11047 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034138 B = 0.001929 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.010964 B =14508.793154 C =14656.588135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.509 3.491 4 O -0.532 6.532 5 C -0.140 4.140 6 C -0.090 4.090 7 C -0.135 4.135 8 C 0.526 3.474 9 O -0.541 6.541 10 N -0.616 5.616 11 C 0.102 3.898 12 C -0.146 4.146 13 C 0.093 3.907 14 C 0.125 3.875 15 C 0.134 3.866 16 N -0.604 5.604 17 C -0.260 4.260 18 H 0.088 0.912 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.089 3.911 26 C 0.046 3.954 27 O -0.373 6.373 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.402 0.598 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.264 0.736 47 H 0.034 0.966 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.564 -16.350 7.464 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.394 5.394 3 C 0.296 3.704 4 O -0.408 6.408 5 C -0.180 4.180 6 C -0.128 4.128 7 C -0.175 4.175 8 C 0.315 3.685 9 O -0.418 6.418 10 N -0.351 5.351 11 C -0.021 4.021 12 C -0.184 4.184 13 C 0.051 3.949 14 C 0.002 3.998 15 C 0.007 3.993 16 N -0.329 5.329 17 C -0.388 4.388 18 H 0.106 0.894 19 C -0.174 4.174 20 N -0.548 5.548 21 Si 0.713 3.287 22 H -0.216 1.216 23 H -0.230 1.230 24 H -0.196 1.196 25 C -0.036 4.036 26 C -0.032 4.032 27 O -0.292 6.292 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.235 0.765 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.466 -15.039 7.527 26.489 hybrid contribution 1.079 0.087 0.530 1.206 sum -19.387 -14.951 8.057 25.775 Atomic orbital electron populations 1.21528 0.79752 1.02115 1.02408 1.45866 1.07813 1.08854 1.76836 1.20835 0.90545 0.83499 0.75569 1.90754 1.70541 1.31240 1.48275 1.21698 0.91542 1.00287 1.04523 1.21085 0.92363 0.94087 1.05287 1.21651 0.97325 0.94192 1.04359 1.20288 0.80348 0.91659 0.76244 1.90730 1.54340 1.46659 1.50075 1.48613 1.05108 1.08269 1.73121 1.22460 0.87372 0.91300 1.00971 1.23254 0.97634 0.95926 1.01615 1.22295 0.91573 0.95853 0.85183 1.21749 0.90197 0.84822 1.03038 1.21376 0.84978 0.95329 0.97599 1.44361 1.01322 1.85750 1.01475 1.18871 0.92268 1.36865 0.90816 0.89415 1.25239 0.96235 0.98836 0.97116 1.69819 1.03478 1.44313 1.37194 0.86989 0.77950 0.82639 0.81140 1.21608 1.23004 1.19570 1.22012 0.98164 0.96920 0.86544 1.23156 0.80892 0.99006 1.00140 1.87704 1.23062 1.91628 1.26765 0.92239 0.90730 0.92255 0.76486 0.88698 0.88646 0.90286 0.90351 0.88907 0.88812 0.91180 0.90725 0.89441 0.88830 0.89856 0.90469 0.90688 0.94861 0.92648 0.94794 0.89997 0.89461 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 10.70 59.85 0.64 1.09 16 2 N -0.74 -4.14 5.71 -67.08 -0.38 -4.52 16 3 C 0.51 4.55 7.83 -10.99 -0.09 4.46 16 4 O -0.53 -7.44 15.98 5.55 0.09 -7.35 16 5 C -0.14 -0.86 5.70 -27.88 -0.16 -1.02 16 6 C -0.09 -0.88 3.79 -26.73 -0.10 -0.98 16 7 C -0.14 -1.18 4.70 -27.88 -0.13 -1.32 16 8 C 0.53 7.16 7.85 -10.99 -0.09 7.07 16 9 O -0.54 -9.59 16.31 5.55 0.09 -9.50 16 10 N -0.62 -8.26 3.33 -170.54 -0.57 -8.82 16 11 C 0.10 1.14 6.70 -2.31 -0.02 1.12 16 12 C -0.15 -2.06 5.93 -24.74 -0.15 -2.21 16 13 C 0.09 1.49 0.83 -89.73 -0.07 1.42 16 14 C 0.12 1.88 6.24 -3.33 -0.02 1.86 16 15 C 0.13 2.54 5.27 -3.85 -0.02 2.52 16 16 N -0.60 -13.61 2.73 -172.18 -0.47 -14.08 16 17 C -0.26 -6.89 10.11 -15.06 -0.15 -7.05 16 18 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 19 C 0.03 0.70 5.25 -17.43 -0.09 0.60 16 20 N -0.91 -26.73 13.97 55.49 0.78 -25.96 16 21 Si 0.88 21.72 24.31 -169.99 -4.13 17.58 16 22 H -0.29 -6.76 6.58 56.52 0.37 -6.39 16 23 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 24 H -0.27 -6.66 6.60 56.52 0.37 -6.29 16 25 C 0.09 1.86 4.37 -3.54 -0.02 1.84 16 26 C 0.05 0.77 6.76 37.30 0.25 1.02 16 27 O -0.37 -6.39 10.22 -35.23 -0.36 -6.75 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.40 0.88 8.83 -40.82 -0.36 0.52 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.95 8.06 -51.93 -0.42 0.54 16 35 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 40 H 0.09 1.27 7.86 -51.93 -0.41 0.86 16 41 H 0.09 1.39 5.98 -51.93 -0.31 1.08 16 42 H 0.08 1.25 7.79 -51.93 -0.40 0.84 16 43 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 44 H 0.07 1.39 7.75 -51.93 -0.40 0.98 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.03 0.73 6.95 -51.93 -0.36 0.37 16 48 H 0.08 1.83 4.60 -51.93 -0.24 1.59 16 49 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.06 0.91 6.14 -51.93 -0.32 0.59 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -35.98 389.95 -7.57 -43.55 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.28 Total: -0.45 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -0.21 Total: 10.44 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.65 Total: -53.39 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.18 Total: -23.61 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.13 Total: 17.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.98 -7.57 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330159616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.954 kcal (2) G-P(sol) polarization free energy of solvation -35.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds