Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46505 * 119.99842 * 2 1 4 4 C 1.53008 * 109.46694 * 269.99667 * 3 2 1 5 5 H 1.08995 * 109.47089 * 304.99664 * 4 3 2 6 6 O 1.42898 * 109.47333 * 65.00070 * 4 3 2 7 7 C 1.53000 * 109.46903 * 184.99919 * 4 3 2 8 8 N 1.46902 * 109.47199 * 180.02562 * 7 4 3 9 9 C 1.46893 * 111.00221 * 180.02562 * 8 7 4 10 10 C 1.50700 * 109.47081 * 179.97438 * 9 8 7 11 11 O 1.21292 * 120.00099 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99923 * 179.97438 * 10 9 8 13 13 C 1.37094 * 119.99963 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00172 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00209 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00246 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99593 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47318 * 90.00041 * 17 15 13 19 19 H 1.48507 * 109.46909 * 209.99964 * 17 15 13 20 20 H 1.48501 * 109.47106 * 329.99973 * 17 15 13 21 21 C 1.34775 * 120.00378 * 179.97438 * 2 1 3 22 22 O 1.21285 * 119.99961 * 180.02562 * 21 2 1 23 23 C 1.50694 * 119.99848 * 359.97438 * 21 2 1 24 24 C 1.52995 * 109.47526 * 180.02562 * 23 21 2 25 25 H 1.09005 * 110.34285 * 307.29383 * 24 23 21 26 26 C 1.51100 * 110.38835 * 69.69591 * 24 23 21 27 27 C 1.30724 * 111.14096 * 135.34907 * 26 24 23 28 28 C 1.51106 * 110.98690 * 359.84700 * 27 26 24 29 29 C 1.54630 * 110.39121 * 185.00436 * 24 23 21 30 30 H 1.08994 * 109.47192 * 270.00508 * 1 2 3 31 31 H 1.09001 * 109.47210 * 30.00713 * 1 2 3 32 32 H 1.09000 * 109.46667 * 150.00460 * 1 2 3 33 33 H 1.08997 * 109.47649 * 29.99421 * 3 2 1 34 34 H 1.09001 * 109.47423 * 149.99759 * 3 2 1 35 35 H 0.96707 * 113.99948 * 59.99314 * 6 4 3 36 36 H 1.08997 * 109.47232 * 300.00290 * 7 4 3 37 37 H 1.09003 * 109.47141 * 59.99887 * 7 4 3 38 38 H 1.00906 * 110.99901 * 303.95659 * 8 7 4 39 39 H 1.09005 * 109.47084 * 299.99610 * 9 8 7 40 40 H 1.08997 * 109.47478 * 59.99978 * 9 8 7 41 41 H 0.97001 * 119.99851 * 0.02562 * 12 10 9 42 42 H 0.96999 * 119.99855 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.47061 * 60.00329 * 23 21 2 44 44 H 1.09002 * 109.47721 * 300.00762 * 23 21 2 45 45 H 1.08005 * 124.44548 * 315.24094 * 26 24 23 46 46 H 1.07999 * 124.56221 * 179.97438 * 27 26 24 47 47 H 1.09002 * 110.38747 * 224.83749 * 28 27 26 48 48 H 1.09000 * 110.38500 * 102.57217 * 28 27 26 49 49 H 1.09003 * 111.03946 * 98.52311 * 29 24 23 50 50 H 1.09001 * 111.07005 * 334.60155 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 2.9643 0.9131 -1.9815 6 8 1.2061 1.9934 -2.0816 7 6 3.3237 2.9681 -1.4445 8 7 3.5681 3.3924 -2.8295 9 6 4.4038 4.5998 -2.8705 10 6 4.6330 5.0036 -4.3042 11 8 4.1482 4.3496 -5.2034 12 7 5.3766 6.0915 -4.5873 13 6 5.5846 6.4591 -5.8915 14 1 5.1523 5.8773 -6.6921 15 6 6.3517 7.5804 -6.1834 16 7 6.5507 7.9331 -7.4335 17 14 7.1001 8.5863 -4.7986 18 1 8.4483 8.0553 -4.4737 19 1 7.2159 10.0045 -5.2237 20 1 6.2310 8.4989 -3.5977 21 6 2.1389 -1.1671 0.0005 22 8 3.3518 -1.1670 0.0010 23 6 1.3855 -2.4722 0.0017 24 6 2.3797 -3.6351 0.0027 25 1 3.0966 -3.5215 -0.8105 26 6 3.0953 -3.7147 1.3311 27 6 3.1564 -4.9478 1.7606 28 6 2.4875 -5.8929 0.7897 29 6 1.6323 -4.9830 -0.1225 30 1 -0.3633 0.0001 1.0276 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0285 0.5137 34 1 3.1499 1.1386 0.5139 35 1 0.6954 2.6949 -1.6544 36 1 2.8120 3.7654 -0.9055 37 1 4.2745 2.7522 -0.9571 38 1 3.9834 2.6471 -3.3681 39 1 3.9001 5.4085 -2.3410 40 1 5.3622 4.3947 -2.3936 41 1 5.7646 6.6142 -3.8682 42 1 7.0865 8.7156 -7.6373 43 1 0.7585 -2.5306 -0.8881 44 1 0.7591 -2.5294 0.8919 45 1 3.5046 -2.8644 1.8564 46 1 3.6209 -5.2516 2.6871 47 1 1.8524 -6.5995 1.3240 48 1 3.2352 -6.4250 0.2016 49 1 1.6415 -5.3414 -1.1519 50 1 0.6119 -4.9016 0.2521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332477883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -96.935468 kcal Electronic energy + Delta-G solvation = -28861.419305 eV Core-core repulsion = 24696.139176 eV Total energy + Delta-G solvation = -4165.280128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56902 -38.93753 -38.46699 -37.68285 -35.55972 -34.76266 -33.81437 -32.21287 -31.64329 -30.54174 -29.25735 -27.90305 -26.91012 -25.84210 -24.45572 -23.07795 -21.87076 -20.89248 -19.75112 -19.35979 -18.84512 -18.34464 -17.43767 -16.98772 -16.48770 -16.27818 -16.09880 -15.82072 -15.58536 -15.14521 -14.95676 -14.73350 -14.54751 -13.82900 -13.72246 -13.53008 -13.16417 -13.14875 -12.98567 -12.80522 -12.63905 -12.40067 -12.22741 -12.18258 -12.10151 -12.00130 -11.83621 -11.64066 -11.60454 -11.45931 -11.20038 -11.14645 -11.10572 -10.58446 -10.45023 -9.97301 -9.94471 -9.55151 -9.19974 -8.86834 -8.54181 -8.17159 -8.09999 -6.28951 -3.80239 1.98792 2.35741 2.64211 3.03741 3.07896 3.15977 3.76799 3.97085 4.07607 4.11936 4.25554 4.33527 4.43082 4.51291 4.67583 4.74037 4.78181 4.86472 4.89462 4.99994 5.01740 5.04429 5.10437 5.18168 5.21864 5.25353 5.27635 5.38729 5.39379 5.45968 5.50432 5.52485 5.58661 5.63910 5.79585 5.81867 5.87791 5.92626 5.94832 6.14124 6.26807 6.59751 7.02454 7.08419 7.52277 7.60628 7.66932 7.89597 8.17012 8.62337 8.97448 9.44734 9.85607 10.84272 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.001678 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.358017 B =16682.194830 C =17036.921148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.085 3.915 4 C 0.098 3.902 5 H 0.100 0.900 6 O -0.540 6.540 7 C 0.029 3.971 8 N -0.658 5.658 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.562 6.562 12 N -0.592 5.592 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.880 3.120 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.512 3.488 22 O -0.536 6.536 23 C -0.130 4.130 24 C -0.055 4.055 25 H 0.091 0.909 26 C -0.142 4.142 27 C -0.181 4.181 28 C -0.100 4.100 29 C -0.122 4.122 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.368 0.632 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.352 0.648 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 -21.262 24.209 34.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.344 5.344 3 C -0.039 4.039 4 C 0.037 3.963 5 H 0.117 0.883 6 O -0.344 6.344 7 C -0.102 4.102 8 N -0.291 5.291 9 C -0.085 4.085 10 C 0.236 3.764 11 O -0.443 6.443 12 N -0.231 5.231 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.707 3.293 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.195 1.195 21 C 0.301 3.699 22 O -0.413 6.413 23 C -0.170 4.170 24 C -0.074 4.074 25 H 0.109 0.891 26 C -0.160 4.160 27 C -0.199 4.199 28 C -0.137 4.137 29 C -0.160 4.160 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.215 0.785 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.172 0.828 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.961 -21.690 22.967 34.146 hybrid contribution 1.424 1.273 1.704 2.560 sum -11.537 -20.416 24.671 34.038 Atomic orbital electron populations 1.21844 0.79080 1.04111 1.01340 1.47737 1.07203 1.05668 1.73779 1.22169 0.98645 0.85364 0.97741 1.22287 0.85456 0.96295 0.92281 0.88254 1.86677 1.31636 1.59006 1.57122 1.22606 0.98896 0.97313 0.91364 1.59977 1.51611 1.07596 1.09874 1.21723 0.95741 0.94363 0.96689 1.19705 0.83437 0.83445 0.89838 1.90578 1.51985 1.54189 1.47581 1.42204 1.47229 1.25533 1.08164 1.19443 1.30294 1.10826 0.82787 0.86285 1.25036 0.97533 0.97134 0.96474 1.69622 1.39097 1.26464 1.17011 0.86666 0.80020 0.80807 0.81843 1.19686 1.20175 1.19517 1.20767 0.88158 0.85398 0.75625 1.90715 1.13915 1.87332 1.49302 1.21743 0.99151 0.91844 1.04237 1.20848 0.96039 0.93027 0.97489 0.89057 1.23325 0.99058 0.97538 0.96076 1.23310 1.01842 0.95258 0.99509 1.21337 0.98379 0.97660 0.96294 1.22559 0.98895 0.94329 1.00189 0.92855 0.90192 0.90962 0.90087 0.88983 0.78540 0.90761 0.94520 0.82817 0.89577 0.93869 0.79728 0.91642 0.88575 0.88869 0.85913 0.86058 0.91356 0.90811 0.90709 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 10.06 59.85 0.60 1.00 16 2 N -0.61 -4.96 2.84 -181.57 -0.52 -5.47 16 3 C 0.08 0.70 5.07 -4.03 -0.02 0.68 16 4 C 0.10 1.04 3.42 -26.73 -0.09 0.95 16 5 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 6 O -0.54 -6.09 12.03 -35.23 -0.42 -6.51 16 7 C 0.03 0.33 5.35 -3.82 -0.02 0.31 16 8 N -0.66 -10.55 5.99 -115.06 -0.69 -11.24 16 9 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 10 C 0.45 10.52 7.82 -10.98 -0.09 10.43 16 11 O -0.56 -15.62 15.78 5.55 0.09 -15.53 16 12 N -0.59 -14.40 5.09 -10.96 -0.06 -14.45 16 13 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 14 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -26.09 13.96 55.50 0.77 -25.32 16 17 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 21 C 0.51 5.03 7.47 -10.99 -0.08 4.95 16 22 O -0.54 -7.22 14.50 5.55 0.08 -7.14 16 23 C -0.13 -0.89 3.65 -27.89 -0.10 -0.99 16 24 C -0.06 -0.44 2.52 -90.72 -0.23 -0.67 16 25 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 26 C -0.14 -1.24 9.27 -35.75 -0.33 -1.57 16 27 C -0.18 -1.36 10.79 -35.75 -0.39 -1.75 16 28 C -0.10 -0.62 6.80 -26.82 -0.18 -0.81 16 29 C -0.12 -0.73 6.71 -25.01 -0.17 -0.89 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.39 7.11 -51.93 -0.37 0.02 16 32 H 0.07 0.30 6.44 -51.93 -0.33 -0.04 16 33 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 34 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 35 H 0.37 2.86 9.04 45.56 0.41 3.27 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.35 6.15 8.43 -39.29 -0.33 5.82 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.10 0.52 7.40 -51.93 -0.38 0.14 16 44 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 45 H 0.12 1.21 7.58 -52.48 -0.40 0.81 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.35 7.91 -51.93 -0.41 -0.06 16 LS Contribution 407.60 15.07 6.14 6.14 Total: -1.00 -36.66 407.60 -8.16 -44.82 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -7.47 Total: 15.29 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.37 Total: 4.52 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.49 Total: -56.48 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.26 Total: -29.18 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.66 -8.16 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332477883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.113 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds