Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00133 * 2 1 4 4 C 1.53004 * 109.47014 * 89.99658 * 3 2 1 5 5 H 1.08991 * 109.47115 * 305.00018 * 4 3 2 6 6 O 1.42900 * 109.46916 * 65.00275 * 4 3 2 7 7 C 1.52996 * 109.46921 * 184.99938 * 4 3 2 8 8 N 1.46904 * 109.47189 * 180.02562 * 7 4 3 9 9 C 1.46901 * 111.00087 * 180.02562 * 8 7 4 10 10 C 1.50702 * 109.46855 * 179.97438 * 9 8 7 11 11 O 1.21289 * 119.99936 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99663 * 179.97438 * 10 9 8 13 13 C 1.37094 * 119.99504 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00460 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99496 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99927 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99721 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47216 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46872 * 120.00412 * 17 15 13 20 20 H 1.48496 * 109.46935 * 240.00270 * 17 15 13 21 21 C 1.34778 * 119.99668 * 179.97438 * 2 1 3 22 22 O 1.21276 * 120.00078 * 184.16265 * 21 2 1 23 23 C 1.50699 * 120.00050 * 4.16110 * 21 2 1 24 24 C 1.53000 * 115.55157 * 168.96686 * 23 21 2 25 25 C 1.53003 * 117.49964 * 34.32622 * 24 23 21 26 26 C 1.53009 * 117.49410 * 325.66953 * 24 23 21 27 27 C 1.53004 * 117.49855 * 23.29692 * 23 21 2 28 28 C 1.53001 * 117.50265 * 314.63590 * 23 21 2 29 29 H 1.09009 * 109.46944 * 88.64681 * 1 2 3 30 30 H 1.08996 * 109.47648 * 208.64649 * 1 2 3 31 31 H 1.08998 * 109.46886 * 328.65414 * 1 2 3 32 32 H 1.08994 * 109.47132 * 329.99731 * 3 2 1 33 33 H 1.09001 * 109.46705 * 209.99451 * 3 2 1 34 34 H 0.96691 * 114.00509 * 59.99717 * 6 4 3 35 35 H 1.09002 * 109.47145 * 59.99707 * 7 4 3 36 36 H 1.09008 * 109.47306 * 299.99771 * 7 4 3 37 37 H 1.00898 * 111.00020 * 56.04554 * 8 7 4 38 38 H 1.09003 * 109.46953 * 299.99566 * 9 8 7 39 39 H 1.08993 * 109.46860 * 59.99296 * 9 8 7 40 40 H 0.97001 * 120.00102 * 0.02562 * 12 10 9 41 41 H 0.97004 * 119.99816 * 179.97438 * 16 15 13 42 42 H 1.08998 * 115.55271 * 180.02562 * 24 23 21 43 43 H 1.09004 * 117.49391 * 0.02562 * 25 24 23 44 44 H 1.08998 * 117.50200 * 145.02145 * 25 24 23 45 45 H 1.08997 * 117.49557 * 214.97725 * 26 24 23 46 46 H 1.08994 * 117.50175 * 359.97438 * 26 24 23 47 47 H 1.08995 * 117.49724 * 0.02562 * 27 23 21 48 48 H 1.09001 * 117.49771 * 145.02256 * 27 23 21 49 49 H 1.08992 * 117.50343 * 214.98052 * 28 23 21 50 50 H 1.09000 * 117.49326 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5062 1.7549 1.9815 6 8 3.3209 0.7725 2.0814 7 6 3.1060 3.0937 1.4443 8 7 3.3514 3.5176 2.8293 9 6 3.9791 4.8451 2.8703 10 6 4.2143 5.2455 4.3039 11 8 3.8904 4.4987 5.2031 12 7 4.7846 6.4335 4.5869 13 6 4.9981 6.7979 5.8912 14 1 4.7089 6.1334 6.6919 15 6 5.5865 8.0225 6.1829 16 7 5.9379 8.8313 5.2086 17 14 5.8767 8.5195 7.9601 18 1 5.3952 7.4413 8.8605 19 1 7.3287 8.7376 8.1822 20 1 5.1376 9.7743 8.2501 21 6 2.1388 -1.1672 0.0005 22 8 3.3492 -1.1687 0.0768 23 6 1.3882 -2.4706 -0.0936 24 6 2.2479 -3.7103 -0.3488 25 6 3.6441 -3.7426 0.2761 26 6 3.4852 -3.5420 -1.2332 27 6 -0.0080 -2.4383 -0.7186 28 6 0.1510 -2.6389 0.7906 29 1 -0.3633 0.0243 -1.0275 30 1 -0.3634 -0.9018 0.4926 31 1 -0.3633 0.8777 0.5346 32 1 1.6085 2.0283 -0.5138 33 1 3.1500 1.1382 -0.5138 34 1 4.1835 0.6810 1.6544 35 1 2.4437 3.8091 0.9569 36 1 4.0525 3.0492 0.9054 37 1 3.9106 2.8375 3.3220 38 1 4.9314 4.8132 2.3407 39 1 3.3223 5.5724 2.3932 40 1 5.0433 7.0309 3.8678 41 1 6.3484 9.6863 5.4123 42 1 1.7050 -4.6529 -0.4173 43 1 3.9500 -2.8809 0.8694 44 1 4.0200 -4.7067 0.6188 45 1 3.7565 -4.3742 -1.8827 46 1 3.6864 -2.5484 -1.6334 47 1 -0.3834 -1.4744 -1.0620 48 1 -0.3142 -3.3003 -1.3112 49 1 -0.0507 -3.6327 1.1902 50 1 -0.1198 -1.8070 1.4408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332531201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -43.449012 kcal Electronic energy + Delta-G solvation = -29688.588587 eV Core-core repulsion = 25525.627805 eV Total energy + Delta-G solvation = -4162.960782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98489 -40.22625 -39.21996 -38.00194 -37.53932 -36.23450 -35.58384 -35.14807 -33.29137 -31.47663 -28.97437 -28.19831 -26.79630 -25.27901 -24.49841 -23.70987 -22.95388 -22.86925 -22.14746 -21.10878 -20.11526 -19.93851 -18.28572 -17.61218 -17.39958 -17.12984 -16.96108 -16.67343 -16.38953 -16.31760 -16.04471 -15.84448 -15.54101 -15.13404 -14.99747 -14.86347 -14.46887 -14.36033 -14.22138 -13.94882 -13.49462 -13.29809 -13.20903 -13.05300 -12.83090 -12.64104 -12.42945 -12.40691 -12.25922 -12.22351 -12.12869 -11.97130 -11.90679 -11.70304 -11.53857 -11.21869 -10.93453 -10.44229 -10.38469 -10.32738 -10.03890 -9.48702 -9.35318 -8.48916 -5.97762 1.35219 1.40477 1.51843 1.55101 1.98441 2.02338 2.28002 2.66926 2.88087 3.17967 3.25039 3.38105 3.44181 3.51851 3.57125 3.85378 3.92800 3.98072 4.09145 4.10781 4.21025 4.22662 4.30596 4.34916 4.36638 4.40080 4.46888 4.51903 4.58023 4.68905 4.70627 4.73703 4.84096 4.85592 4.87783 5.05561 5.10080 5.12167 5.17307 5.31162 5.39098 5.44118 5.54696 5.86094 6.08048 6.33131 6.42134 6.57978 6.77938 7.10486 7.26045 7.53417 8.09323 8.68678 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.001784 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.400856 B =15692.083245 C =15956.060168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.609 5.609 3 C 0.092 3.908 4 C 0.101 3.899 5 H 0.094 0.906 6 O -0.568 6.568 7 C 0.033 3.967 8 N -0.681 5.681 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.275 1.275 19 H -0.270 1.270 20 H -0.269 1.269 21 C 0.544 3.456 22 O -0.557 6.557 23 C -0.151 4.151 24 C -0.104 4.104 25 C -0.185 4.185 26 C -0.170 4.170 27 C -0.162 4.162 28 C -0.158 4.158 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.376 0.624 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.344 0.656 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.129 0.871 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.141 0.859 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 -21.261 -20.253 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.341 5.341 3 C -0.032 4.032 4 C 0.040 3.960 5 H 0.112 0.888 6 O -0.374 6.374 7 C -0.097 4.097 8 N -0.314 5.314 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.210 5.210 13 C -0.464 4.464 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.818 3.182 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.194 1.194 21 C 0.334 3.666 22 O -0.436 6.436 23 C -0.154 4.154 24 C -0.123 4.123 25 C -0.222 4.222 26 C -0.207 4.207 27 C -0.198 4.198 28 C -0.195 4.195 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.224 0.776 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.163 0.837 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.121 0.879 46 H 0.096 0.904 47 H 0.159 0.841 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.332 -21.366 -19.147 32.070 hybrid contribution 2.075 0.764 0.049 2.212 sum -12.256 -20.602 -19.098 30.650 Atomic orbital electron populations 1.23402 0.78151 1.06725 1.03621 1.47671 1.07979 1.04990 1.73410 1.22128 0.98821 0.86024 0.96201 1.22337 0.93816 0.86341 0.93482 0.88818 1.86593 1.29819 1.63465 1.57500 1.22683 1.00621 0.97590 0.88779 1.59999 1.53512 1.02879 1.14961 1.21555 0.99531 0.93332 0.92274 1.20933 0.82104 0.82555 0.92140 1.90501 1.56858 1.53901 1.49912 1.41929 1.54095 1.16731 1.08196 1.19702 1.39214 1.02739 0.84793 0.90497 1.26062 0.96094 0.95221 1.03942 1.69675 1.41833 1.10978 1.33531 0.84855 0.78304 0.78128 0.76940 1.19942 1.19521 1.19390 1.19903 0.87150 0.84779 0.74808 1.90577 1.15431 1.87084 1.50531 1.20939 0.90735 0.92553 1.11166 1.21521 0.89037 0.96390 1.05304 1.23119 0.99661 1.02749 0.96645 1.22871 1.01909 1.02354 0.93548 1.24237 0.93192 1.07181 0.95230 1.23455 0.96691 1.04874 0.94439 0.89752 0.86405 0.90443 0.86660 0.90531 0.77584 0.88182 0.93977 0.83739 0.91768 0.87313 0.76890 0.91233 0.85297 0.89260 0.88723 0.87913 0.90448 0.84133 0.86456 0.86438 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.50 127.77 1.09 1.27 16 2 N -0.61 -9.70 2.86 -846.76 -2.42 -12.12 16 3 C 0.09 1.47 5.11 86.38 0.44 1.91 16 4 C 0.10 2.17 3.48 30.59 0.11 2.28 16 5 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 6 O -0.57 -15.86 11.42 -137.26 -1.57 -17.43 16 7 C 0.03 0.74 5.39 86.30 0.47 1.20 16 8 N -0.68 -22.59 6.12 -517.91 -3.17 -25.76 16 9 C 0.07 2.30 6.17 85.56 0.53 2.83 16 10 C 0.44 21.52 7.82 87.66 0.69 22.20 16 11 O -0.63 -36.42 15.78 -3.06 -0.05 -36.46 16 12 N -0.57 -30.13 5.29 -306.98 -1.62 -31.75 16 13 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 14 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 16 N -0.92 -50.12 13.05 21.67 0.28 -49.83 16 17 Si 0.99 43.70 29.55 68.60 2.03 45.72 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 C 0.54 11.33 6.78 87.66 0.59 11.93 16 22 O -0.56 -15.24 10.32 8.71 0.09 -15.15 16 23 C -0.15 -2.32 2.46 -52.93 -0.13 -2.45 16 24 C -0.10 -1.70 5.85 -10.79 -0.06 -1.77 16 25 C -0.18 -3.89 9.67 30.62 0.30 -3.59 16 26 C -0.17 -3.22 9.68 30.62 0.30 -2.92 16 27 C -0.16 -1.23 9.09 30.62 0.28 -0.95 16 28 C -0.16 -1.59 9.08 30.62 0.28 -1.32 16 29 H 0.08 0.35 6.69 -2.38 -0.02 0.34 16 30 H 0.12 0.84 2.30 -2.39 -0.01 0.84 16 31 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 32 H 0.12 1.16 8.07 -2.39 -0.02 1.15 16 33 H 0.08 1.41 7.48 -2.39 -0.02 1.39 16 34 H 0.38 9.65 8.65 -74.06 -0.64 9.01 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 36 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.34 12.91 7.82 -89.70 -0.70 12.21 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 41 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 2.47 5.91 -2.38 -0.01 2.45 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.80 6.65 -2.39 -0.02 1.79 16 47 H 0.14 0.67 3.95 -2.39 -0.01 0.66 16 48 H 0.12 0.58 8.14 -2.39 -0.02 0.57 16 49 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 1.17 6.01 -2.39 -0.01 1.16 16 Total: -1.00 -77.51 396.38 -1.36 -78.87 By element: Atomic # 1 Polarization: 53.31 SS G_CDS: -1.07 Total: 52.24 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.14 Total: 11.66 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.93 Total: -119.46 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -1.53 Total: -69.04 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -77.51 -1.36 -78.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332531201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.419 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds