Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00000 * 2 1 4 4 C 1.52999 * 109.47290 * 180.02562 * 3 2 1 5 5 C 1.53000 * 115.54846 * 65.46234 * 4 3 2 6 6 N 1.46500 * 109.47286 * 64.27319 * 5 4 3 7 7 C 1.34771 * 120.00267 * 185.11375 * 6 5 4 8 8 O 1.21348 * 119.99913 * 359.97438 * 7 6 5 9 9 C 1.49451 * 120.00082 * 179.97438 * 7 6 5 10 10 O 1.21343 * 120.00242 * 0.02562 * 9 7 6 11 11 N 1.34782 * 119.99688 * 179.97438 * 9 7 6 12 12 C 1.46507 * 119.99646 * 180.02562 * 11 9 7 13 13 C 1.53038 * 109.45564 * 275.02422 * 12 11 9 14 14 C 1.53201 * 109.30992 * 178.60060 * 13 12 11 15 15 N 1.46921 * 108.75981 * 54.65526 * 14 13 12 16 16 C 1.36943 * 120.62386 * 126.40999 * 15 14 13 17 17 H 1.07997 * 120.00427 * 331.46021 * 16 15 14 18 18 C 1.38813 * 119.99913 * 151.47040 * 16 15 14 19 19 N 1.31618 * 120.00059 * 343.83802 * 18 16 15 20 20 Si 1.86798 * 120.00131 * 163.83844 * 18 16 15 21 21 H 1.48499 * 109.47393 * 89.99910 * 20 18 16 22 22 H 1.48502 * 109.47172 * 209.99900 * 20 18 16 23 23 H 1.48498 * 109.47093 * 329.99464 * 20 18 16 24 24 C 1.46924 * 118.74445 * 306.38225 * 15 14 13 25 25 C 1.53036 * 109.45814 * 154.97060 * 12 11 9 26 26 C 1.53006 * 117.50043 * 279.79671 * 4 3 2 27 27 C 1.53003 * 117.50245 * 211.13729 * 4 3 2 28 28 H 1.09000 * 109.47219 * 59.99715 * 1 2 3 29 29 H 1.09002 * 109.47572 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47284 * 299.99883 * 1 2 3 31 31 H 1.09002 * 109.47703 * 299.99754 * 3 2 1 32 32 H 1.08997 * 109.47265 * 60.00196 * 3 2 1 33 33 H 1.09005 * 109.46799 * 184.27105 * 5 4 3 34 34 H 1.08999 * 109.47102 * 304.27195 * 5 4 3 35 35 H 0.97000 * 119.99745 * 5.11005 * 6 5 4 36 36 H 0.97000 * 120.00381 * 359.97438 * 11 9 7 37 37 H 1.09000 * 109.45789 * 34.99961 * 12 11 9 38 38 H 1.08991 * 109.50250 * 298.56754 * 13 12 11 39 39 H 1.08999 * 109.49705 * 58.66776 * 13 12 11 40 40 H 1.08997 * 109.59996 * 294.86847 * 14 13 12 41 41 H 1.08996 * 109.69945 * 174.50485 * 14 13 12 42 42 H 0.97007 * 120.00602 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58593 * 293.82181 * 24 15 14 44 44 H 1.08995 * 109.70541 * 173.47265 * 24 15 14 45 45 H 1.09002 * 109.49866 * 301.33196 * 25 12 11 46 46 H 1.09002 * 109.49728 * 61.40425 * 25 12 11 47 47 H 1.09000 * 117.49336 * 359.97438 * 26 4 3 48 48 H 1.08995 * 117.49896 * 145.01324 * 26 4 3 49 49 H 1.09001 * 117.49457 * 214.98066 * 27 4 3 50 50 H 1.09000 * 117.49297 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1474 0.5613 -1.2567 6 7 3.8841 1.4265 -2.4093 7 6 4.2412 1.0284 -3.6463 8 8 4.7813 -0.0465 -3.8055 9 6 3.9721 1.9108 -4.8221 10 8 3.4324 2.9859 -4.6629 11 7 4.3297 1.5128 -6.0592 12 6 4.0664 2.3781 -7.2117 13 6 2.6376 2.1450 -7.7082 14 6 2.3541 3.0763 -8.8911 15 7 3.3891 2.8703 -9.9133 16 6 3.0444 2.5810 -11.2067 17 1 2.1210 2.0617 -11.4163 18 6 3.8821 2.9551 -12.2485 19 7 4.8275 3.8478 -12.0446 20 14 3.6675 2.1916 -13.9397 21 1 2.7203 3.0118 -14.7367 22 1 4.9812 2.1414 -14.6305 23 1 3.1307 0.8144 -13.7966 24 6 4.8009 2.9810 -9.5218 25 6 5.0568 2.0511 -8.3316 26 6 4.2220 0.8984 1.3364 27 6 4.3317 2.2867 0.7010 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 5.2237 0.4538 -1.1215 34 1 3.7032 -0.4190 -1.4293 35 1 3.4527 2.2859 -2.2820 36 1 4.7621 0.6539 -6.1863 37 1 4.1829 3.4210 -6.9169 38 1 2.5276 1.1085 -8.0265 39 1 1.9338 2.3555 -6.9030 40 1 2.3749 4.1126 -8.5538 41 1 1.3747 2.8484 -9.3116 42 1 5.4127 4.1096 -12.7727 43 1 5.0212 4.0096 -9.2359 44 1 5.4379 2.6896 -10.3568 45 1 6.0751 2.1948 -7.9701 46 1 4.9241 1.0152 -8.6436 47 1 3.5871 0.7966 2.2165 48 1 5.1099 0.2664 1.3211 49 1 5.2918 2.5674 0.2678 50 1 3.7689 3.0980 1.1627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332999919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -70.554506 kcal Electronic energy + Delta-G solvation = -29635.718255 eV Core-core repulsion = 25471.582091 eV Total energy + Delta-G solvation = -4164.136164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72215 -39.51340 -38.55037 -37.31601 -37.18288 -34.92587 -34.09505 -32.13286 -30.20134 -29.52065 -28.88132 -27.74121 -25.93810 -25.39752 -23.77842 -22.88820 -22.27788 -21.62578 -20.38802 -20.01974 -19.40384 -18.29200 -17.01649 -16.78827 -16.64743 -16.41494 -16.30743 -15.73402 -15.53909 -15.18501 -14.82709 -14.62067 -14.39261 -13.99655 -13.76719 -13.66945 -13.55167 -13.06745 -12.95183 -12.85599 -12.59480 -12.42193 -12.08872 -11.97644 -11.72236 -11.56651 -11.48915 -11.13486 -10.88865 -10.85984 -10.72147 -10.60348 -10.52168 -10.31989 -10.07577 -10.06614 -9.85534 -9.69290 -9.43265 -9.41820 -8.86183 -8.48049 -6.69789 -5.80944 -3.23861 1.45208 2.30220 2.96104 3.25820 3.36983 3.44151 3.46534 3.54537 3.73831 4.10375 4.21380 4.35638 4.48556 4.49721 4.54009 4.83970 4.96263 5.01833 5.12132 5.16825 5.25353 5.28905 5.30700 5.37689 5.41175 5.45995 5.46431 5.52520 5.57699 5.63027 5.80530 5.99654 6.03467 6.16850 6.26822 6.47329 6.49347 6.54488 6.71295 6.72011 6.77475 6.93345 6.97861 7.29413 7.42580 7.61153 7.75307 7.78670 8.08341 8.43386 9.19250 9.82114 10.38955 11.28043 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.001963 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.870362 B =14262.068175 C =14718.032246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.098 3.902 4 C -0.149 4.149 5 C 0.160 3.840 6 N -0.700 5.700 7 C 0.507 3.493 8 O -0.521 6.521 9 C 0.503 3.497 10 O -0.525 6.525 11 N -0.690 5.690 12 C 0.148 3.852 13 C -0.140 4.140 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.175 3.825 25 C -0.148 4.148 26 C -0.150 4.150 27 C -0.162 4.162 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.412 0.588 36 H 0.408 0.592 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.254 0.746 43 H 0.022 0.978 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -5.146 27.503 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.021 3.979 4 C -0.150 4.150 5 C 0.037 3.963 6 N -0.354 5.354 7 C 0.288 3.712 8 O -0.397 6.397 9 C 0.283 3.717 10 O -0.402 6.402 11 N -0.341 5.341 12 C 0.046 3.954 13 C -0.180 4.180 14 C 0.021 3.979 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.188 4.188 26 C -0.187 4.187 27 C -0.199 4.199 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.248 0.752 36 H 0.244 0.756 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.493 -5.255 27.342 27.953 hybrid contribution -0.319 -0.128 -0.812 0.882 sum -2.812 -5.382 26.530 27.216 Atomic orbital electron populations 1.22763 0.80740 1.03000 1.00064 1.87893 1.19744 1.27360 1.95388 1.21946 0.90253 0.85122 1.00565 1.21552 0.93143 1.05797 0.94463 1.20855 0.99863 0.93918 0.81697 1.45707 1.61010 1.22977 1.05713 1.20367 0.79544 0.86748 0.84529 1.90759 1.41118 1.22273 1.85518 1.20005 0.80471 0.86652 0.84579 1.90750 1.41753 1.22235 1.85483 1.46228 1.58907 1.23031 1.05900 1.21241 0.96366 0.94311 0.83517 1.22403 0.95029 1.01584 0.99022 1.20869 0.93203 0.95116 0.88690 1.44092 1.00098 1.82038 1.05315 1.19172 1.06809 1.30176 0.82038 0.91658 1.25073 0.99615 0.97128 0.97844 1.70010 1.21991 1.30995 1.31803 0.86291 0.77031 0.79194 0.84215 1.21382 1.21552 1.20478 1.20752 0.86641 0.94347 0.93439 1.22574 0.96765 1.02562 0.96883 1.22992 1.02427 0.98677 0.94651 1.23137 1.01611 0.92350 1.02786 0.93842 0.89436 0.94110 0.92562 0.92811 0.90909 0.89614 0.75210 0.75608 0.89570 0.92026 0.92665 0.96105 0.92408 0.93567 0.96004 0.88852 0.92483 0.91868 0.88068 0.88052 0.87768 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.47 10.64 -35.23 -0.37 -3.85 16 3 C 0.10 0.71 5.69 37.16 0.21 0.92 16 4 C -0.15 -1.04 1.81 -154.50 -0.28 -1.32 16 5 C 0.16 1.44 5.46 -4.04 -0.02 1.42 16 6 N -0.70 -7.32 5.38 -60.73 -0.33 -7.65 16 7 C 0.51 6.79 7.89 -11.59 -0.09 6.70 16 8 O -0.52 -7.98 16.47 5.50 0.09 -7.89 16 9 C 0.50 7.53 7.85 -11.58 -0.09 7.44 16 10 O -0.53 -8.83 16.14 5.50 0.09 -8.74 16 11 N -0.69 -10.36 5.07 -54.19 -0.27 -10.64 16 12 C 0.15 2.57 2.42 -67.89 -0.16 2.40 16 13 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 14 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 15 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16 16 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 17 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 19 N -0.90 -25.91 11.17 55.49 0.62 -25.29 16 20 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.17 4.06 5.29 -3.71 -0.02 4.04 16 25 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 26 C -0.15 -0.84 9.95 -26.69 -0.27 -1.10 16 27 C -0.16 -0.87 9.94 -26.69 -0.27 -1.13 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 32 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.41 3.92 7.55 -40.82 -0.31 3.61 16 36 H 0.41 5.64 8.07 -40.82 -0.33 5.31 16 37 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 409.53 15.07 6.17 6.17 Total: -1.00 -31.68 409.53 -8.44 -40.12 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.46 Total: 5.25 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -0.43 Total: 11.23 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.50 Total: -58.76 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.20 Total: -20.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.68 -8.44 -40.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332999919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.432 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds