Wall clock time and date at job start Sat Apr 11 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42909 * 114.00058 * 2 1 4 4 C 1.52991 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 185.11969 * 4 3 2 6 6 H 1.09003 * 109.78619 * 62.02835 * 5 4 3 7 7 C 1.53246 * 109.62971 * 301.54934 * 5 4 3 8 8 N 1.46900 * 109.33681 * 186.46006 * 7 5 4 9 9 C 1.46894 * 111.27382 * 63.10632 * 8 7 5 10 10 C 1.53239 * 109.33857 * 296.89239 * 9 8 7 11 11 N 1.47076 * 108.52368 * 53.82627 * 10 9 8 12 12 C 1.34774 * 120.88232 * 128.83610 * 11 10 9 13 13 O 1.21358 * 120.00312 * 177.20403 * 12 11 10 14 14 C 1.49455 * 120.00158 * 357.20564 * 12 11 10 15 15 O 1.21349 * 119.99499 * 6.26970 * 14 12 11 16 16 N 1.34773 * 120.00175 * 186.26981 * 14 12 11 17 17 C 1.46498 * 119.99956 * 185.02894 * 16 14 12 18 18 C 1.52999 * 109.47375 * 175.01679 * 17 16 14 19 19 C 1.50699 * 115.54846 * 279.41598 * 18 17 16 20 20 H 1.08001 * 119.99937 * 95.13545 * 19 18 17 21 21 C 1.37872 * 119.99958 * 275.12956 * 19 18 17 22 22 N 1.31513 * 120.00523 * 5.08683 * 21 19 18 23 23 Si 1.86804 * 120.00065 * 185.08528 * 21 19 18 24 24 H 1.48503 * 109.47310 * 89.99907 * 23 21 19 25 25 H 1.48493 * 109.47447 * 210.00007 * 23 21 19 26 26 H 1.48500 * 109.47132 * 330.00196 * 23 21 19 27 27 C 1.52999 * 117.49928 * 133.70678 * 18 17 16 28 28 C 1.52998 * 60.00243 * 252.51258 * 27 18 17 29 29 H 1.09005 * 109.47077 * 299.99222 * 1 2 3 30 30 H 1.08998 * 109.47582 * 59.99677 * 1 2 3 31 31 H 1.09007 * 109.47010 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46813 * 60.00290 * 3 2 1 33 33 H 1.08993 * 109.47083 * 300.00650 * 3 2 1 34 34 H 1.09007 * 109.47036 * 65.12499 * 4 3 2 35 35 H 1.08996 * 109.47499 * 305.12164 * 4 3 2 36 36 H 1.08988 * 109.49142 * 66.49599 * 7 5 4 37 37 H 1.09001 * 109.48947 * 306.41339 * 7 5 4 38 38 H 1.00900 * 111.00238 * 298.94826 * 8 7 5 39 39 H 1.09002 * 109.49400 * 56.84577 * 9 8 7 40 40 H 1.09004 * 109.49514 * 176.90670 * 9 8 7 41 41 H 1.08998 * 109.63477 * 173.54239 * 10 9 8 42 42 H 1.08998 * 109.62974 * 294.12193 * 10 9 8 43 43 H 0.96997 * 119.99930 * 5.03519 * 16 14 12 44 44 H 1.09010 * 109.47169 * 295.01667 * 17 16 14 45 45 H 1.09001 * 109.47103 * 55.01444 * 17 16 14 46 46 H 0.96991 * 120.00562 * 185.00473 * 22 21 19 47 47 H 1.08998 * 117.49905 * 359.97438 * 27 18 17 48 48 H 1.08996 * 117.49855 * 145.02424 * 27 18 17 49 49 H 1.09000 * 117.50110 * 252.51614 * 28 27 18 50 50 H 1.08999 * 117.52089 * 107.47976 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 6 4.1572 2.5767 0.1281 6 1 3.8617 3.0266 1.0759 7 6 3.6846 3.4609 -1.0309 8 7 4.4025 4.7418 -0.9895 9 6 5.8458 4.5505 -1.1848 10 6 6.4069 3.7111 -0.0322 11 7 5.6230 2.4706 0.0673 12 6 6.2315 1.2686 0.1021 13 8 5.5724 0.2584 0.2354 14 6 7.7181 1.1797 -0.0234 15 8 8.3870 2.1920 -0.0422 16 7 8.3158 -0.0247 -0.1158 17 6 9.7777 -0.1180 -0.1278 18 6 10.1951 -1.5899 -0.1139 19 6 10.1704 -2.2598 1.2358 20 1 9.3020 -2.8237 1.5430 21 6 11.2564 -2.1528 2.0784 22 7 12.2720 -1.3854 1.7482 23 14 11.2853 -3.0981 3.6894 24 1 11.9011 -4.4315 3.4700 25 1 12.0808 -2.3444 4.6914 26 1 9.8969 -3.2700 4.1874 27 6 11.2811 -2.0256 -1.0996 28 6 9.8267 -2.4401 -1.3315 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8630 0.7253 -0.9333 35 1 3.8512 0.5665 0.8396 36 1 2.6137 3.6408 -0.9379 37 1 3.8889 2.9599 -1.9772 38 1 4.2161 5.2332 -0.1282 39 1 6.0198 4.0343 -2.1289 40 1 6.3421 5.5209 -1.2038 41 1 7.4512 3.4694 -0.2297 42 1 6.3276 4.2700 0.9003 43 1 7.7779 -0.8298 -0.1744 44 1 10.1650 0.3610 -1.0271 45 1 10.1810 0.3823 0.7527 46 1 13.0663 -1.3660 2.3044 47 1 11.6980 -1.2637 -1.7582 48 1 11.9781 -2.7969 -0.7719 49 1 9.5668 -3.4841 -1.1562 50 1 9.2867 -1.9509 -2.1421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335172871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:47 Heat of formation + Delta-G solvation = -52.408201 kcal Electronic energy + Delta-G solvation = -30714.526045 eV Core-core repulsion = 26551.176764 eV Total energy + Delta-G solvation = -4163.349281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09907 -39.08578 -37.95948 -37.74506 -36.87150 -34.12166 -33.76742 -33.06589 -31.99822 -29.44543 -27.57829 -26.73794 -25.82691 -25.34994 -24.59020 -23.13472 -21.82354 -21.46720 -21.03846 -19.82763 -19.22718 -17.64233 -16.97746 -16.61225 -16.32933 -16.14945 -15.89187 -15.64437 -15.33585 -15.15277 -14.82729 -14.73693 -14.53568 -14.26175 -14.13829 -13.67576 -13.40409 -13.26944 -13.12707 -12.75977 -12.55263 -12.47080 -11.93834 -11.82895 -11.69387 -11.56363 -11.47735 -11.29983 -11.11212 -11.08286 -10.90922 -10.57059 -10.33193 -10.18192 -9.86610 -9.71209 -9.59385 -9.10497 -8.75844 -8.54937 -8.43322 -8.32812 -8.15509 -6.12437 -4.20556 1.66006 2.40936 3.25874 3.33651 3.36790 3.42049 3.49663 3.75269 4.00745 4.34760 4.49784 4.63711 4.74013 4.85731 4.89338 4.96502 4.98028 5.01951 5.11092 5.16449 5.16818 5.20793 5.25753 5.28003 5.43166 5.43921 5.58454 5.80088 5.90047 5.91665 6.04655 6.07599 6.25133 6.32002 6.43290 6.45004 6.59286 6.63685 6.71068 6.95573 6.99942 7.01274 7.04645 7.10085 7.33729 7.40361 7.67776 7.79327 8.04790 8.28846 8.41625 8.82150 9.47347 10.96042 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.002950 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.733578 B = 9488.450601 C =10645.667932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.057 3.943 4 C -0.113 4.113 5 C 0.110 3.890 6 H 0.075 0.925 7 C 0.046 3.954 8 N -0.687 5.687 9 C 0.044 3.956 10 C 0.012 3.988 11 N -0.584 5.584 12 C 0.509 3.491 13 O -0.509 6.509 14 C 0.498 3.502 15 O -0.527 6.527 16 N -0.665 5.665 17 C 0.158 3.842 18 C 0.025 3.975 19 C -0.499 4.499 20 H 0.062 0.938 21 C 0.073 3.927 22 N -0.876 5.876 23 Si 0.890 3.110 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.144 4.144 28 C -0.210 4.210 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.341 0.659 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.169 0.831 42 H 0.064 0.936 43 H 0.411 0.589 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.262 0.738 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.116 10.650 -5.231 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.021 4.021 4 C -0.151 4.151 5 C 0.005 3.995 6 H 0.093 0.907 7 C -0.085 4.085 8 N -0.315 5.315 9 C -0.086 4.086 10 C -0.111 4.111 11 N -0.319 5.319 12 C 0.293 3.707 13 O -0.384 6.384 14 C 0.279 3.721 15 O -0.408 6.408 16 N -0.313 5.313 17 C 0.036 3.964 18 C 0.024 3.976 19 C -0.537 4.537 20 H 0.080 0.920 21 C -0.131 4.131 22 N -0.512 5.512 23 Si 0.717 3.283 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.182 4.182 28 C -0.247 4.247 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.158 0.842 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.185 0.815 42 H 0.082 0.918 43 H 0.247 0.753 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.802 10.891 -5.732 21.642 hybrid contribution -0.143 -0.884 1.831 2.038 sum -17.946 10.007 -3.901 20.914 Atomic orbital electron populations 1.22737 0.81325 1.02749 0.99717 1.87937 1.19345 1.27815 1.95317 1.22705 0.95013 0.84722 0.99611 1.22033 0.91116 0.95195 1.06713 1.22049 0.79900 0.97886 0.99673 0.90714 1.22579 0.98673 0.89141 0.98077 1.60619 1.09168 1.19892 1.41815 1.22442 0.87415 1.00243 0.98507 1.24047 1.03176 0.84702 0.99134 1.47966 1.06043 1.06403 1.71442 1.20400 0.89094 0.83523 0.77725 1.90804 1.64743 1.35394 1.47481 1.20053 0.88055 0.84934 0.79082 1.90233 1.65180 1.33433 1.51984 1.46027 1.09913 1.07534 1.67857 1.21372 0.75457 0.98619 1.00971 1.19043 0.98927 0.89169 0.90443 1.20425 1.02425 1.32488 0.98321 0.92003 1.24971 0.95882 0.94456 0.97797 1.69994 1.05622 1.36355 1.39229 0.86622 0.78269 0.79921 0.83462 1.20567 1.21207 1.19740 1.22515 0.90688 1.02564 1.02444 1.23010 0.99742 1.00545 1.01429 0.94251 0.94220 0.89641 0.93682 0.93496 0.90167 0.87548 0.89483 0.90128 0.84169 0.90440 0.89246 0.81522 0.91801 0.75252 0.93524 0.89905 0.92830 0.91569 0.89659 0.90047 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.66 10.70 -35.23 -0.38 -5.04 16 3 C 0.06 0.56 5.40 37.15 0.20 0.76 16 4 C -0.11 -1.37 3.57 -26.74 -0.10 -1.46 16 5 C 0.11 1.16 3.17 -67.49 -0.21 0.95 16 6 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 7 C 0.05 0.40 5.40 -3.70 -0.02 0.38 16 8 N -0.69 -5.95 6.85 -113.51 -0.78 -6.72 16 9 C 0.04 0.42 6.70 -3.70 -0.02 0.39 16 10 C 0.01 0.14 6.36 -3.60 -0.02 0.11 16 11 N -0.58 -7.58 3.01 -165.42 -0.50 -8.08 16 12 C 0.51 8.16 7.62 -11.58 -0.09 8.08 16 13 O -0.51 -8.85 12.13 5.49 0.07 -8.78 16 14 C 0.50 8.92 7.81 -11.58 -0.09 8.83 16 15 O -0.53 -9.87 13.04 5.50 0.07 -9.80 16 16 N -0.66 -12.68 5.50 -60.73 -0.33 -13.02 16 17 C 0.16 3.41 5.57 -4.04 -0.02 3.39 16 18 C 0.03 0.57 1.36 -155.66 -0.21 0.36 16 19 C -0.50 -12.94 8.82 -34.44 -0.30 -13.24 16 20 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 21 C 0.07 1.93 5.40 -17.82 -0.10 1.83 16 22 N -0.88 -23.92 12.90 55.43 0.71 -23.21 16 23 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 C -0.14 -3.17 9.37 -26.73 -0.25 -3.42 16 28 C -0.21 -4.24 9.82 -26.73 -0.26 -4.51 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.39 6.86 -51.93 -0.36 0.03 16 34 H 0.08 1.12 7.30 -51.92 -0.38 0.74 16 35 H 0.11 1.60 6.23 -51.93 -0.32 1.28 16 36 H 0.09 0.61 6.91 -51.94 -0.36 0.25 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.34 2.49 8.83 -39.29 -0.35 2.14 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.17 2.36 3.87 -56.69 -0.22 2.14 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.41 7.67 7.91 -40.82 -0.32 7.35 16 44 H 0.05 0.97 7.94 -51.92 -0.41 0.56 16 45 H 0.08 2.04 8.12 -51.93 -0.42 1.62 16 46 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 47 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 48 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 49 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -28.80 398.27 -8.72 -37.52 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.18 Total: 11.62 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.39 Total: 3.83 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.89 Total: -51.02 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.24 Total: -23.62 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.80 -8.72 -37.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335172871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.888 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds