Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99905 * 2 1 4 4 C 1.52993 * 109.47124 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47474 * 62.56945 * 4 3 2 6 6 C 1.47846 * 111.00160 * 176.54809 * 5 4 3 7 7 C 1.54902 * 104.79601 * 213.63695 * 6 5 4 8 8 C 1.55145 * 101.65265 * 37.06831 * 7 6 5 9 9 H 1.08999 * 110.85537 * 82.80447 * 8 7 6 10 10 N 1.46499 * 110.70561 * 205.96220 * 8 7 6 11 11 C 1.34777 * 120.00524 * 268.60100 * 10 8 7 12 12 O 1.21354 * 119.99762 * 359.97438 * 11 10 8 13 13 C 1.49442 * 120.00616 * 180.02562 * 11 10 8 14 14 O 1.21351 * 119.99641 * 5.15365 * 13 11 10 15 15 N 1.34770 * 120.00338 * 185.15555 * 13 11 10 16 16 C 1.46505 * 119.99935 * 184.97260 * 15 13 11 17 17 C 1.53001 * 109.47119 * 175.61042 * 16 15 13 18 18 C 1.50705 * 115.54900 * 40.00505 * 17 16 15 19 19 H 1.07998 * 119.99919 * 267.99423 * 18 17 16 20 20 C 1.37875 * 119.99897 * 87.99578 * 18 17 16 21 21 N 1.31514 * 120.00383 * 179.63714 * 20 18 17 22 22 Si 1.86804 * 119.99740 * 359.63631 * 20 18 17 23 23 H 1.48497 * 109.47044 * 91.85807 * 22 20 18 24 24 H 1.48511 * 109.46885 * 211.85182 * 22 20 18 25 25 H 1.48495 * 109.47273 * 331.84994 * 22 20 18 26 26 C 1.53003 * 117.49767 * 254.30158 * 17 16 15 27 27 C 1.52999 * 117.50092 * 185.67818 * 17 16 15 28 28 C 1.47440 * 110.99814 * 55.70508 * 5 4 3 29 29 H 1.09001 * 109.47191 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47629 * 300.00330 * 1 2 3 31 31 H 1.09004 * 109.46841 * 60.00443 * 1 2 3 32 32 H 1.09003 * 109.47182 * 59.99468 * 3 2 1 33 33 H 1.09001 * 109.46928 * 300.00169 * 3 2 1 34 34 H 1.09002 * 109.46883 * 302.56738 * 4 3 2 35 35 H 1.09000 * 109.46794 * 182.57140 * 4 3 2 36 36 H 1.09007 * 110.36972 * 332.46443 * 6 5 4 37 37 H 1.08995 * 110.37081 * 94.80577 * 6 5 4 38 38 H 1.09001 * 110.99406 * 155.15875 * 7 6 5 39 39 H 1.09002 * 110.99285 * 278.98023 * 7 6 5 40 40 H 0.97003 * 119.99609 * 88.60107 * 10 8 7 41 41 H 0.96999 * 120.00452 * 4.97153 * 15 13 11 42 42 H 1.08997 * 109.46908 * 295.60601 * 16 15 13 43 43 H 1.08996 * 109.47191 * 55.61000 * 16 15 13 44 44 H 0.96999 * 120.00200 * 180.02562 * 21 20 18 45 45 H 1.08996 * 117.49731 * 0.02562 * 26 17 16 46 46 H 1.09004 * 117.49490 * 145.02101 * 26 17 16 47 47 H 1.08995 * 117.49824 * 214.97441 * 27 17 16 48 48 H 1.08998 * 117.49420 * 359.97438 * 27 17 16 49 49 H 1.09006 * 109.89026 * 242.66577 * 28 5 4 50 50 H 1.09005 * 109.88975 * 3.68589 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9738 0.5098 -1.2283 6 6 5.4491 0.4483 -1.3017 7 6 5.7754 0.5669 -2.8113 8 6 4.6994 1.5788 -3.2859 9 1 5.0164 2.6030 -3.0892 10 7 4.4064 1.3937 -4.7093 11 6 5.0913 2.0939 -5.6351 12 8 5.9505 2.8782 -5.2895 13 6 4.7920 1.9056 -7.0871 14 8 3.8706 1.1937 -7.4292 15 7 5.5452 2.5262 -8.0165 16 6 5.1864 2.4299 -9.4337 17 6 6.1305 3.3061 -10.2594 18 6 7.5758 3.2860 -9.8328 19 1 7.9405 4.0169 -9.1263 20 6 8.4323 2.3343 -10.3443 21 7 9.6952 2.3211 -9.9775 22 14 7.7990 1.0638 -11.5585 23 1 7.9897 1.5645 -12.9434 24 1 8.5497 -0.2056 -11.3833 25 1 6.3544 0.8223 -11.3138 26 6 5.5740 4.6211 -10.8092 27 6 5.8371 3.4470 -11.7544 28 6 3.4731 1.2121 -2.4241 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8535 0.6047 0.8670 35 1 3.9786 2.1795 0.0468 36 1 5.8913 1.2790 -0.7515 37 1 5.8092 -0.5025 -0.9091 38 1 6.7790 0.9638 -2.9639 39 1 5.6565 -0.3935 -3.3131 40 1 3.7193 0.7671 -4.9855 41 1 6.3248 3.0366 -7.7472 42 1 5.2732 1.3938 -9.7608 43 1 4.1603 2.7701 -9.5726 44 1 10.2979 1.6518 -10.3377 45 1 4.5356 4.8620 -10.5823 46 1 6.2534 5.4719 -10.8623 47 1 6.6894 3.5255 -12.4293 48 1 4.9718 2.9151 -12.1497 49 1 2.8068 0.5579 -2.9866 50 1 2.9413 2.1162 -2.1277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341896404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -74.105250 kcal Electronic energy + Delta-G solvation = -29628.865571 eV Core-core repulsion = 25464.575435 eV Total energy + Delta-G solvation = -4164.290136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53042 -39.51046 -38.29063 -37.67446 -37.04720 -34.86940 -33.44898 -32.20041 -32.03759 -28.99822 -28.57398 -27.23812 -26.39494 -25.56888 -23.94586 -22.77666 -21.75234 -21.33920 -20.66555 -20.00582 -19.45452 -18.04443 -17.09394 -16.90792 -16.76594 -16.31074 -15.77336 -15.59602 -15.52475 -15.28433 -15.08297 -14.72062 -14.37848 -14.02018 -13.90290 -13.79880 -13.44217 -13.08601 -13.00675 -12.83602 -12.57772 -12.43398 -12.36813 -12.22349 -11.92689 -11.84374 -11.49843 -11.35538 -11.24900 -11.19177 -11.05892 -10.78892 -10.54065 -10.25091 -9.97316 -9.69271 -9.34265 -9.22997 -9.16871 -8.79778 -8.64305 -8.62706 -8.34059 -6.21054 -4.27711 1.75674 2.60953 3.24309 3.35103 3.38212 3.39979 3.55673 3.61342 4.00255 4.28408 4.34601 4.38413 4.66942 4.74405 4.74648 4.75895 4.89643 4.95560 4.98767 5.02824 5.04379 5.11168 5.13844 5.14487 5.32195 5.36648 5.47434 5.55686 5.63078 5.68108 5.77848 5.89623 5.92380 6.02462 6.15358 6.30630 6.39156 6.41246 6.57576 6.63131 6.64970 6.78190 6.88013 6.94677 7.03913 7.21981 7.61446 7.82985 8.13943 8.35009 8.51048 8.79980 9.41184 10.89486 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002183 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.834608 B =12826.135737 C =13391.273725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.059 3.941 4 C 0.049 3.951 5 N -0.514 5.514 6 C 0.043 3.957 7 C -0.142 4.142 8 C 0.123 3.877 9 H 0.100 0.900 10 N -0.698 5.698 11 C 0.511 3.489 12 O -0.513 6.513 13 C 0.495 3.505 14 O -0.545 6.545 15 N -0.660 5.660 16 C 0.150 3.850 17 C -0.018 4.018 18 C -0.498 4.498 19 H 0.082 0.918 20 C 0.083 3.917 21 N -0.889 5.889 22 Si 0.879 3.121 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.256 1.256 26 C -0.177 4.177 27 C -0.193 4.193 28 C 0.035 3.965 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.413 0.587 41 H 0.423 0.577 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.267 0.733 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.020 -2.297 18.895 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.018 4.018 4 C -0.079 4.079 5 N -0.239 5.239 6 C -0.085 4.085 7 C -0.181 4.181 8 C 0.017 3.983 9 H 0.118 0.882 10 N -0.352 5.352 11 C 0.292 3.708 12 O -0.387 6.387 13 C 0.275 3.725 14 O -0.425 6.425 15 N -0.312 5.312 16 C 0.026 3.974 17 C -0.019 4.019 18 C -0.535 4.535 19 H 0.099 0.901 20 C -0.121 4.121 21 N -0.525 5.525 22 Si 0.707 3.293 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.180 1.180 26 C -0.214 4.214 27 C -0.231 4.231 28 C -0.093 4.093 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.250 0.750 41 H 0.263 0.737 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.933 -2.945 18.887 24.257 hybrid contribution -0.037 0.285 -0.748 0.802 sum -14.969 -2.660 18.139 23.668 Atomic orbital electron populations 1.22745 0.81510 1.02779 0.99677 1.88013 1.19019 1.26915 1.95254 1.22701 0.93380 0.85509 1.00204 1.22349 0.93650 0.97714 0.94169 1.63664 1.09523 1.49755 1.00961 1.23046 0.87148 1.01946 0.96312 1.23154 0.99655 1.00246 0.95057 1.22272 0.95372 1.00749 0.79907 0.88215 1.45668 1.40318 1.44065 1.05195 1.20431 0.81801 0.81041 0.87557 1.90777 1.30826 1.35093 1.82023 1.19932 0.83940 0.81993 0.86658 1.90703 1.31320 1.38328 1.82121 1.45887 1.29250 1.49448 1.06570 1.21226 0.96641 1.00573 0.78947 1.19594 0.96087 0.94967 0.91297 1.20173 0.88998 1.16343 1.27978 0.90055 1.24997 0.94451 0.96871 0.95810 1.69888 1.04013 1.35124 1.43440 0.86864 0.80014 0.80752 0.81636 1.20367 1.22065 1.18035 1.22914 0.99623 0.93176 1.05726 1.22944 1.01994 1.03532 0.94599 1.23120 0.96442 0.98053 0.91713 0.89619 0.94425 0.94184 0.92953 0.93008 0.89490 0.92984 0.93130 0.89560 0.89769 0.89828 0.75033 0.73653 0.91539 0.92713 0.92358 0.90805 0.89305 0.89114 0.90658 0.89552 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.48 10.61 -35.23 -0.37 -3.85 16 3 C 0.06 0.43 5.80 37.15 0.22 0.64 16 4 C 0.05 0.36 5.19 -3.83 -0.02 0.34 16 5 N -0.51 -4.66 5.18 -231.26 -1.20 -5.86 16 6 C 0.04 0.37 6.73 -2.30 -0.02 0.35 16 7 C -0.14 -1.46 6.76 -24.59 -0.17 -1.63 16 8 C 0.12 1.33 3.31 -66.11 -0.22 1.11 16 9 H 0.10 1.17 7.55 -51.93 -0.39 0.78 16 10 N -0.70 -8.90 5.17 -52.47 -0.27 -9.17 16 11 C 0.51 8.44 7.89 -11.59 -0.09 8.35 16 12 O -0.51 -9.64 16.15 5.49 0.09 -9.55 16 13 C 0.50 9.24 7.88 -11.59 -0.09 9.14 16 14 O -0.55 -10.71 16.50 5.50 0.09 -10.61 16 15 N -0.66 -13.29 5.36 -60.73 -0.33 -13.62 16 16 C 0.15 3.08 5.59 -4.04 -0.02 3.06 16 17 C -0.02 -0.40 1.18 -155.66 -0.18 -0.58 16 18 C -0.50 -12.91 7.99 -34.44 -0.28 -13.19 16 19 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 20 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 21 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 22 Si 0.88 21.03 25.03 -169.99 -4.25 16.77 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.26 -5.82 5.38 56.52 0.30 -5.51 16 26 C -0.18 -3.40 9.88 -26.73 -0.26 -3.66 16 27 C -0.19 -3.88 7.50 -26.73 -0.20 -4.08 16 28 C 0.04 0.32 5.86 -2.84 -0.02 0.30 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.36 6.17 -51.93 -0.32 0.04 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.33 8.01 -51.93 -0.42 -0.09 16 36 H 0.05 0.39 7.72 -51.92 -0.40 -0.01 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.41 4.81 7.85 -40.82 -0.32 4.48 16 41 H 0.42 8.99 6.87 -40.82 -0.28 8.71 16 42 H 0.07 1.45 6.51 -51.93 -0.34 1.11 16 43 H 0.05 1.04 7.95 -51.93 -0.41 0.63 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 46 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 47 H 0.09 1.92 7.10 -51.93 -0.37 1.55 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.09 0.80 7.72 -51.93 -0.40 0.40 16 50 H 0.06 0.51 6.05 -51.93 -0.31 0.20 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -31.01 400.94 -8.03 -39.03 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -8.27 Total: 12.38 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.34 Total: 3.63 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -1.02 Total: -53.83 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.19 Total: -24.02 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.25 Total: 16.77 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.01 -8.03 -39.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341896404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.071 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds