Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99905 * 2 1 4 4 C 1.52993 * 109.47124 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47474 * 62.56945 * 4 3 2 6 6 C 1.47846 * 111.00160 * 176.54809 * 5 4 3 7 7 C 1.54902 * 104.79601 * 213.63695 * 6 5 4 8 8 C 1.55145 * 101.65265 * 37.06831 * 7 6 5 9 9 H 1.08999 * 110.85537 * 82.80447 * 8 7 6 10 10 N 1.46499 * 110.70561 * 205.96220 * 8 7 6 11 11 C 1.34777 * 120.00524 * 268.60100 * 10 8 7 12 12 O 1.21354 * 119.99762 * 359.97438 * 11 10 8 13 13 C 1.49442 * 120.00616 * 180.02562 * 11 10 8 14 14 O 1.21351 * 119.99641 * 5.15365 * 13 11 10 15 15 N 1.34770 * 120.00338 * 185.15555 * 13 11 10 16 16 C 1.46505 * 119.99935 * 184.97260 * 15 13 11 17 17 C 1.53001 * 109.47119 * 175.61042 * 16 15 13 18 18 C 1.50705 * 115.54900 * 40.00505 * 17 16 15 19 19 H 1.07998 * 119.99919 * 267.99423 * 18 17 16 20 20 C 1.37875 * 119.99897 * 87.99578 * 18 17 16 21 21 N 1.31514 * 120.00383 * 179.63714 * 20 18 17 22 22 Si 1.86804 * 119.99740 * 359.63631 * 20 18 17 23 23 H 1.48497 * 109.47044 * 91.85807 * 22 20 18 24 24 H 1.48511 * 109.46885 * 211.85182 * 22 20 18 25 25 H 1.48495 * 109.47273 * 331.84994 * 22 20 18 26 26 C 1.53003 * 117.49767 * 254.30158 * 17 16 15 27 27 C 1.52999 * 117.50092 * 185.67818 * 17 16 15 28 28 C 1.47440 * 110.99814 * 55.70508 * 5 4 3 29 29 H 1.09001 * 109.47191 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47629 * 300.00330 * 1 2 3 31 31 H 1.09004 * 109.46841 * 60.00443 * 1 2 3 32 32 H 1.09003 * 109.47182 * 59.99468 * 3 2 1 33 33 H 1.09001 * 109.46928 * 300.00169 * 3 2 1 34 34 H 1.09002 * 109.46883 * 302.56738 * 4 3 2 35 35 H 1.09000 * 109.46794 * 182.57140 * 4 3 2 36 36 H 1.09007 * 110.36972 * 332.46443 * 6 5 4 37 37 H 1.08995 * 110.37081 * 94.80577 * 6 5 4 38 38 H 1.09001 * 110.99406 * 155.15875 * 7 6 5 39 39 H 1.09002 * 110.99285 * 278.98023 * 7 6 5 40 40 H 0.97003 * 119.99609 * 88.60107 * 10 8 7 41 41 H 0.96999 * 120.00452 * 4.97153 * 15 13 11 42 42 H 1.08997 * 109.46908 * 295.60601 * 16 15 13 43 43 H 1.08996 * 109.47191 * 55.61000 * 16 15 13 44 44 H 0.96999 * 120.00200 * 180.02562 * 21 20 18 45 45 H 1.08996 * 117.49731 * 0.02562 * 26 17 16 46 46 H 1.09004 * 117.49490 * 145.02101 * 26 17 16 47 47 H 1.08995 * 117.49824 * 214.97441 * 27 17 16 48 48 H 1.08998 * 117.49420 * 359.97438 * 27 17 16 49 49 H 1.09006 * 109.89026 * 242.66577 * 28 5 4 50 50 H 1.09005 * 109.88975 * 3.68589 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9738 0.5098 -1.2283 6 6 5.4491 0.4483 -1.3017 7 6 5.7754 0.5669 -2.8113 8 6 4.6994 1.5788 -3.2859 9 1 5.0164 2.6030 -3.0892 10 7 4.4064 1.3937 -4.7093 11 6 5.0913 2.0939 -5.6351 12 8 5.9505 2.8782 -5.2895 13 6 4.7920 1.9056 -7.0871 14 8 3.8706 1.1937 -7.4292 15 7 5.5452 2.5262 -8.0165 16 6 5.1864 2.4299 -9.4337 17 6 6.1305 3.3061 -10.2594 18 6 7.5758 3.2860 -9.8328 19 1 7.9405 4.0169 -9.1263 20 6 8.4323 2.3343 -10.3443 21 7 9.6952 2.3211 -9.9775 22 14 7.7990 1.0638 -11.5585 23 1 7.9897 1.5645 -12.9434 24 1 8.5497 -0.2056 -11.3833 25 1 6.3544 0.8223 -11.3138 26 6 5.5740 4.6211 -10.8092 27 6 5.8371 3.4470 -11.7544 28 6 3.4731 1.2121 -2.4241 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8535 0.6047 0.8670 35 1 3.9786 2.1795 0.0468 36 1 5.8913 1.2790 -0.7515 37 1 5.8092 -0.5025 -0.9091 38 1 6.7790 0.9638 -2.9639 39 1 5.6565 -0.3935 -3.3131 40 1 3.7193 0.7671 -4.9855 41 1 6.3248 3.0366 -7.7472 42 1 5.2732 1.3938 -9.7608 43 1 4.1603 2.7701 -9.5726 44 1 10.2979 1.6518 -10.3377 45 1 4.5356 4.8620 -10.5823 46 1 6.2534 5.4719 -10.8623 47 1 6.6894 3.5255 -12.4293 48 1 4.9718 2.9151 -12.1497 49 1 2.8068 0.5579 -2.9866 50 1 2.9413 2.1162 -2.1277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341896404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -99.291721 kcal Electronic energy + Delta-G solvation = -29629.957738 eV Core-core repulsion = 25464.575435 eV Total energy + Delta-G solvation = -4165.382303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79738 -40.49883 -39.53192 -38.68871 -38.40218 -35.98814 -34.91496 -34.25605 -32.84063 -29.88747 -29.27438 -28.73966 -27.51551 -26.92093 -25.14379 -23.61618 -23.32057 -22.19294 -21.53101 -21.38581 -21.05090 -19.49401 -18.36307 -18.07757 -17.57066 -17.43756 -17.07379 -16.95360 -16.83247 -16.25967 -16.10498 -15.83333 -15.61564 -15.41042 -15.05987 -14.79312 -14.59972 -14.50151 -14.20468 -14.14991 -13.99728 -13.79383 -13.22043 -13.10656 -12.98988 -12.82767 -12.64972 -12.60782 -12.44523 -12.17681 -12.14935 -11.99954 -11.91075 -11.80615 -11.54808 -11.04602 -10.78734 -10.67479 -10.52722 -10.40609 -10.31675 -9.96105 -9.29660 -8.30732 -6.39448 0.34501 1.31544 1.35684 1.39891 1.49796 2.13583 2.35748 2.61055 2.87335 3.02140 3.05190 3.20043 3.47820 3.52674 3.63688 3.92206 3.99566 4.10326 4.19922 4.21111 4.28691 4.33028 4.38978 4.47408 4.48860 4.54810 4.57163 4.63220 4.68093 4.76309 4.77468 4.84327 4.87971 4.91510 4.96456 4.96507 5.05349 5.05676 5.17513 5.27467 5.36029 5.49343 5.67956 5.88536 5.95614 6.02729 6.27166 6.35917 6.43304 6.71111 6.74633 6.97145 7.32114 8.83448 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002183 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.834608 B =12826.135737 C =13391.273725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.057 3.943 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.050 3.950 7 C -0.142 4.142 8 C 0.120 3.880 9 H 0.093 0.907 10 N -0.678 5.678 11 C 0.514 3.486 12 O -0.541 6.541 13 C 0.497 3.503 14 O -0.553 6.553 15 N -0.670 5.670 16 C 0.156 3.844 17 C -0.047 4.047 18 C -0.484 4.484 19 H 0.042 0.958 20 C 0.028 3.972 21 N -0.941 5.941 22 Si 0.932 3.068 23 H -0.268 1.268 24 H -0.304 1.304 25 H -0.233 1.233 26 C -0.158 4.158 27 C -0.186 4.186 28 C 0.045 3.955 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.420 0.580 41 H 0.416 0.584 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.265 0.735 45 H 0.106 0.894 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.085 0.915 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.814 -2.528 19.220 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.020 4.020 4 C -0.080 4.080 5 N -0.251 5.251 6 C -0.078 4.078 7 C -0.181 4.181 8 C 0.015 3.985 9 H 0.111 0.889 10 N -0.332 5.332 11 C 0.295 3.705 12 O -0.418 6.418 13 C 0.277 3.723 14 O -0.433 6.433 15 N -0.321 5.321 16 C 0.033 3.967 17 C -0.048 4.048 18 C -0.522 4.522 19 H 0.060 0.940 20 C -0.171 4.171 21 N -0.580 5.580 22 Si 0.757 3.243 23 H -0.193 1.193 24 H -0.232 1.232 25 H -0.156 1.156 26 C -0.195 4.195 27 C -0.224 4.224 28 C -0.084 4.084 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.258 0.742 41 H 0.254 0.746 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.124 0.876 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.103 0.897 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.792 -3.187 19.231 26.392 hybrid contribution 0.801 0.411 -0.741 1.166 sum -16.990 -2.776 18.490 25.264 Atomic orbital electron populations 1.22861 0.80361 1.03365 1.00468 1.87968 1.20450 1.28181 1.95454 1.22795 0.93064 0.85001 1.01117 1.22431 0.94024 0.98302 0.93292 1.63682 1.09585 1.50319 1.01529 1.23005 0.87177 1.02722 0.94856 1.23109 0.98847 0.99570 0.96540 1.22439 0.96768 1.00610 0.78668 0.88906 1.45636 1.39179 1.42713 1.05623 1.20094 0.81992 0.81360 0.87102 1.90774 1.32277 1.36658 1.82097 1.20228 0.83369 0.81257 0.87413 1.90690 1.31534 1.38497 1.82537 1.45936 1.29365 1.49903 1.06925 1.21141 0.97316 0.99490 0.78794 1.19506 0.94051 0.98027 0.93188 1.20279 0.91360 1.14436 1.26124 0.94009 1.25770 0.94465 0.99050 0.97806 1.70030 1.05580 1.36575 1.45775 0.86016 0.80531 0.77854 0.79872 1.19285 1.23199 1.15605 1.22960 1.01021 0.91856 1.03638 1.23007 1.02582 1.03885 0.92916 1.23046 0.95346 0.98612 0.91373 0.89253 0.93171 0.93809 0.91282 0.92781 0.89390 0.91604 0.92030 0.89058 0.90937 0.90392 0.74158 0.74552 0.92755 0.90425 0.92596 0.87613 0.90039 0.90370 0.87695 0.89682 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.82 10.61 -148.98 -1.58 -8.40 16 3 C 0.06 0.70 5.80 71.98 0.42 1.12 16 4 C 0.05 0.60 5.19 86.30 0.45 1.05 16 5 N -0.53 -8.62 5.18 -885.56 -4.59 -13.21 16 6 C 0.05 0.79 6.73 86.77 0.58 1.37 16 7 C -0.14 -2.83 6.76 31.98 0.22 -2.62 16 8 C 0.12 2.48 3.31 46.17 0.15 2.63 16 9 H 0.09 2.11 7.55 -2.39 -0.02 2.09 16 10 N -0.68 -16.67 5.17 -438.29 -2.26 -18.94 16 11 C 0.51 16.84 7.89 87.27 0.69 17.53 16 12 O -0.54 -20.59 16.15 -3.26 -0.05 -20.64 16 13 C 0.50 18.17 7.88 87.27 0.69 18.86 16 14 O -0.55 -20.85 16.50 -3.25 -0.05 -20.90 16 15 N -0.67 -26.76 5.36 -464.42 -2.49 -29.25 16 16 C 0.16 6.13 5.59 86.38 0.48 6.61 16 17 C -0.05 -1.97 1.18 -52.92 -0.06 -2.03 16 18 C -0.48 -25.60 7.99 25.60 0.20 -25.39 16 19 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 20 C 0.03 1.55 5.47 84.65 0.46 2.01 16 21 N -0.94 -57.01 13.96 21.45 0.30 -56.71 16 22 Si 0.93 43.12 25.03 68.60 1.72 44.84 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.23 -9.82 5.38 99.48 0.54 -9.29 16 26 C -0.16 -5.64 9.88 30.60 0.30 -5.34 16 27 C -0.19 -6.94 7.50 30.60 0.23 -6.71 16 28 C 0.04 0.73 5.86 86.64 0.51 1.23 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.04 0.44 8.14 -2.38 -0.02 0.43 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.63 6.17 -2.39 -0.01 0.61 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.66 8.01 -2.39 -0.02 0.64 16 36 H 0.06 0.84 7.72 -2.38 -0.02 0.82 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.42 9.21 7.85 -92.71 -0.73 8.48 16 41 H 0.42 18.06 6.87 -92.71 -0.64 17.42 16 42 H 0.05 2.25 6.51 -2.39 -0.02 2.24 16 43 H 0.08 2.69 7.95 -2.39 -0.02 2.67 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.11 3.14 8.08 -2.39 -0.02 3.12 16 46 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 47 H 0.08 3.12 7.10 -2.39 -0.02 3.11 16 48 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.08 1.43 7.72 -2.38 -0.02 1.41 16 50 H 0.08 1.06 6.05 -2.38 -0.01 1.05 16 Total: -1.00 -67.73 400.94 -3.02 -70.75 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.58 Total: 40.59 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 6.57 Total: 11.87 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -9.04 Total: -118.10 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -1.69 Total: -49.94 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.72 Total: 44.84 kcal Total: -67.73 -3.02 -70.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341896404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.540 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds