Wall clock time and date at job start Sat Apr 11 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46491 * 119.99844 * 2 1 4 4 C 1.34774 * 119.99815 * 180.02562 * 2 1 3 5 5 O 1.21279 * 120.00342 * 4.54131 * 4 2 1 6 6 C 1.50697 * 119.99660 * 184.27009 * 4 2 1 7 7 H 1.08994 * 109.47442 * 310.44010 * 6 4 2 8 8 C 1.53000 * 109.47307 * 70.44192 * 6 4 2 9 9 C 1.52998 * 109.47251 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47185 * 300.00156 * 9 8 6 11 11 C 1.53000 * 109.47154 * 59.99784 * 10 9 8 12 12 H 1.08999 * 109.46566 * 60.00421 * 11 10 9 13 13 N 1.46500 * 109.46976 * 179.97438 * 11 10 9 14 14 C 1.34778 * 120.00255 * 275.00143 * 13 11 10 15 15 O 1.21339 * 119.99991 * 0.02562 * 14 13 11 16 16 C 1.49450 * 119.99721 * 180.02562 * 14 13 11 17 17 O 1.21348 * 120.00427 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99721 * 180.02562 * 16 14 13 19 19 C 1.46507 * 120.00018 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.47017 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.46744 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00608 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99778 * 180.02562 * 21 20 19 24 24 N 1.31520 * 120.00053 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99941 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46919 * 60.00136 * 25 23 21 27 27 H 1.48504 * 109.46833 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47128 * 300.00103 * 25 23 21 29 29 C 1.52998 * 109.47251 * 300.00176 * 11 10 9 30 30 H 1.08999 * 109.47168 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47249 * 299.99766 * 1 2 3 32 32 H 1.09001 * 109.47524 * 60.00024 * 1 2 3 33 33 H 1.09001 * 109.47256 * 263.32965 * 3 2 1 34 34 H 1.09004 * 109.47545 * 23.33099 * 3 2 1 35 35 H 1.09003 * 109.47191 * 143.33300 * 3 2 1 36 36 H 1.08996 * 109.47387 * 300.00140 * 8 6 4 37 37 H 1.09008 * 109.46915 * 60.00129 * 8 6 4 38 38 H 1.08994 * 109.47378 * 59.99891 * 9 8 6 39 39 H 1.09000 * 109.47471 * 180.02562 * 9 8 6 40 40 H 1.09003 * 109.47070 * 180.02562 * 10 9 8 41 41 H 1.09008 * 109.47263 * 299.99932 * 10 9 8 42 42 H 0.97009 * 119.99490 * 95.00533 * 13 11 10 43 43 H 0.96999 * 119.99893 * 359.97438 * 18 16 14 44 44 H 1.08997 * 109.47090 * 300.00134 * 19 18 16 45 45 H 1.08997 * 109.46740 * 60.00244 * 19 18 16 46 46 H 1.09000 * 109.46822 * 300.00137 * 20 19 18 47 47 H 1.09002 * 109.46828 * 59.99856 * 20 19 18 48 48 H 0.96994 * 119.99685 * 179.97438 * 24 23 21 49 49 H 1.09003 * 109.46807 * 300.00186 * 29 11 10 50 50 H 1.08998 * 109.47013 * 179.97438 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5354 -2.2158 -0.0841 6 6 3.6427 -1.1690 0.0967 7 1 4.0549 -0.4739 -0.6347 8 6 4.0634 -0.7383 1.5032 9 6 5.5902 -0.7407 1.6020 10 6 6.1172 -2.1494 1.3210 11 6 5.6965 -2.5801 -0.0856 12 1 6.1091 -1.8852 -0.8169 13 7 6.2017 -3.9286 -0.3549 14 6 7.4559 -4.0984 -0.8181 15 8 8.1669 -3.1344 -1.0116 16 6 7.9709 -5.4741 -1.0933 17 8 7.2597 -6.4382 -0.9002 18 7 9.2254 -5.6440 -1.5560 19 6 9.7305 -6.9926 -1.8253 20 6 11.1693 -6.9052 -2.3384 21 6 11.6885 -8.2924 -2.6159 22 1 11.0556 -9.1505 -2.4441 23 6 12.9718 -8.4661 -3.0894 24 7 13.7424 -7.4212 -3.2992 25 14 13.6158 -10.1857 -3.4328 26 1 12.7634 -10.8377 -4.4592 27 1 15.0122 -10.1009 -3.9309 28 1 13.5835 -10.9853 -2.1820 29 6 4.1697 -2.5776 -0.1844 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.4825 1.5237 -1.0207 34 1 1.5619 2.0552 0.4070 35 1 3.0930 1.1712 0.6137 36 1 3.6876 0.2650 1.7036 37 1 3.6512 -1.4335 2.2346 38 1 6.0028 -0.0459 0.8706 39 1 5.8900 -0.4343 2.6042 40 1 7.2050 -2.1512 1.3918 41 1 5.7047 -2.8444 2.0524 42 1 5.6333 -4.6993 -0.1999 43 1 9.7937 -4.8733 -1.7107 44 1 9.7067 -7.5795 -0.9071 45 1 9.1049 -7.4711 -2.5787 46 1 11.1925 -6.3184 -3.2566 47 1 11.7951 -6.4264 -1.5852 48 1 14.6453 -7.5435 -3.6319 49 1 3.7572 -3.2726 0.5471 50 1 3.8700 -2.8840 -1.1866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342120716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:15 Heat of formation + Delta-G solvation = -148.644923 kcal Electronic energy + Delta-G solvation = -29150.479176 eV Core-core repulsion = 24982.956757 eV Total energy + Delta-G solvation = -4167.522419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92786 -41.31801 -39.87382 -38.59205 -36.87210 -36.61566 -35.41251 -34.74702 -32.20660 -31.70216 -30.89578 -28.78301 -27.42196 -27.22385 -25.46114 -24.04611 -23.31664 -22.71028 -21.52274 -21.23250 -20.09480 -19.51038 -18.57873 -18.15024 -17.78205 -17.25159 -17.09366 -16.70557 -16.52549 -16.41673 -16.20087 -15.88183 -15.73985 -15.11751 -14.96690 -14.89140 -14.48933 -14.31304 -14.25580 -14.01847 -13.54445 -13.48476 -13.30919 -13.26661 -13.26370 -12.93071 -12.89903 -12.80261 -12.54726 -12.44625 -12.27516 -12.21762 -11.72889 -11.69146 -11.55824 -11.54124 -11.44648 -10.80121 -10.64177 -10.60799 -10.28348 -10.19392 -9.66111 -8.23159 -6.34512 0.31435 1.28835 1.43671 1.45683 1.53836 1.55625 2.04993 2.11841 2.40123 2.66583 3.11615 3.33705 3.42021 3.66884 3.71478 3.96246 4.08314 4.13793 4.26216 4.33731 4.37846 4.38463 4.41064 4.44290 4.49719 4.51880 4.59913 4.75969 4.80448 4.86902 4.90636 4.93683 4.96232 5.07061 5.07480 5.13523 5.21986 5.25804 5.29065 5.41681 5.45990 5.52358 5.54617 5.75417 5.93574 6.12963 6.32355 6.35045 6.69982 6.79298 6.92369 7.12352 7.34928 8.88534 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.001653 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.216112 B =16936.623001 C =17336.604565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.621 5.621 3 C 0.059 3.941 4 C 0.512 3.488 5 O -0.586 6.586 6 C -0.094 4.094 7 H 0.120 0.880 8 C -0.109 4.109 9 C -0.106 4.106 10 C -0.133 4.133 11 C 0.146 3.854 12 H 0.091 0.909 13 N -0.687 5.687 14 C 0.518 3.482 15 O -0.536 6.536 16 C 0.498 3.502 17 O -0.551 6.551 18 N -0.688 5.688 19 C 0.137 3.863 20 C 0.019 3.981 21 C -0.547 4.547 22 H 0.064 0.936 23 C 0.006 3.994 24 N -0.927 5.927 25 Si 0.968 3.032 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.267 1.267 29 C -0.101 4.101 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.417 0.583 43 H 0.415 0.585 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.008 0.992 47 H 0.009 0.991 48 H 0.266 0.734 49 H 0.072 0.928 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.291 23.499 10.835 36.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.354 5.354 3 C -0.082 4.082 4 C 0.301 3.699 5 O -0.466 6.466 6 C -0.116 4.116 7 H 0.138 0.862 8 C -0.146 4.146 9 C -0.144 4.144 10 C -0.171 4.171 11 C 0.043 3.957 12 H 0.109 0.891 13 N -0.339 5.339 14 C 0.298 3.702 15 O -0.413 6.413 16 C 0.279 3.721 17 O -0.430 6.430 18 N -0.339 5.339 19 C 0.015 3.985 20 C -0.019 4.019 21 C -0.586 4.586 22 H 0.082 0.918 23 C -0.193 4.193 24 N -0.566 5.566 25 Si 0.792 3.208 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.192 1.192 29 C -0.140 4.140 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.251 0.749 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.450 23.036 10.722 35.963 hybrid contribution 0.545 -1.093 -0.478 1.311 sum -24.905 21.943 10.244 34.738 Atomic orbital electron populations 1.21780 0.78958 1.03132 1.02924 1.47871 1.07651 1.06990 1.72843 1.22327 0.98480 0.83945 1.03464 1.21046 0.90826 0.83155 0.74885 1.90690 1.71294 1.33026 1.51628 1.21242 0.90126 0.98549 1.01695 0.86241 1.21694 0.96585 1.03155 0.93198 1.21456 0.94146 0.95162 1.03634 1.21976 1.01001 0.98879 0.95284 1.21219 0.93792 0.82223 0.98475 0.89100 1.45860 1.13034 1.11318 1.63701 1.19888 0.83409 0.88515 0.78370 1.90742 1.57151 1.41485 1.51953 1.20418 0.82889 0.89917 0.78921 1.90723 1.57262 1.42334 1.52647 1.46063 1.13625 1.11395 1.62824 1.21482 0.95902 0.81219 0.99937 1.19175 0.89970 0.97071 0.95656 1.21423 0.99155 0.93260 1.44729 0.91779 1.25908 0.97081 1.01361 0.94925 1.70070 1.08936 1.31649 1.45959 0.85460 0.77237 0.79175 0.78928 1.19283 1.20760 1.19219 1.21508 0.92340 0.97117 1.03013 0.92096 0.90157 0.90867 0.91504 0.88729 0.88787 0.88107 0.91867 0.90153 0.89564 0.92501 0.91291 0.74613 0.74860 0.92068 0.92147 0.97355 0.97302 0.92562 0.90911 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.65 127.77 1.36 2.06 16 2 N -0.62 -6.52 3.27 -871.91 -2.85 -9.38 16 3 C 0.06 0.14 9.88 127.77 1.26 1.41 16 4 C 0.51 8.41 6.93 87.66 0.61 9.02 16 5 O -0.59 -15.15 15.32 -3.03 -0.05 -15.20 16 6 C -0.09 -1.07 1.71 -11.54 -0.02 -1.09 16 7 H 0.12 0.89 7.66 -2.39 -0.02 0.87 16 8 C -0.11 -0.82 4.90 30.59 0.15 -0.67 16 9 C -0.11 -0.89 5.92 30.59 0.18 -0.71 16 10 C -0.13 -1.99 5.49 30.60 0.17 -1.82 16 11 C 0.15 2.57 2.45 44.99 0.11 2.68 16 12 H 0.09 1.69 7.58 -2.39 -0.02 1.67 16 13 N -0.69 -15.71 5.07 -443.88 -2.25 -17.96 16 14 C 0.52 15.27 7.85 87.27 0.69 15.96 16 15 O -0.54 -17.39 16.14 -3.21 -0.05 -17.44 16 16 C 0.50 17.33 7.89 87.27 0.69 18.02 16 17 O -0.55 -21.18 16.48 -3.24 -0.05 -21.23 16 18 N -0.69 -25.53 5.55 -464.40 -2.58 -28.11 16 19 C 0.14 5.87 5.61 86.38 0.48 6.35 16 20 C 0.02 0.96 5.09 29.85 0.15 1.11 16 21 C -0.55 -30.47 9.11 25.60 0.23 -30.24 16 22 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 23 C 0.01 0.34 5.46 84.65 0.46 0.81 16 24 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 25 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 29 C -0.10 -1.63 4.02 30.59 0.12 -1.51 16 30 H 0.06 0.92 6.91 -2.39 -0.02 0.90 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.09 -0.10 8.02 -2.39 -0.02 -0.11 16 35 H 0.09 0.00 4.39 -2.39 -0.01 -0.01 16 36 H 0.10 0.28 5.47 -2.39 -0.01 0.27 16 37 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.42 9.07 8.08 -92.70 -0.75 8.32 16 43 H 0.41 14.71 7.94 -92.71 -0.74 13.97 16 44 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 48 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 49 H 0.07 1.32 7.99 -2.39 -0.02 1.30 16 50 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.42 404.89 0.60 -73.82 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.52 Total: 23.07 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 6.65 Total: 21.37 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -7.40 Total: -110.00 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.15 Total: -53.88 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.42 0.60 -73.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342120716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.823 kcal (2) G-P(sol) polarization free energy of solvation -74.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds