Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99881 * 2 1 4 4 C 1.50699 * 109.47322 * 293.95546 * 3 2 1 5 5 O 1.21289 * 119.99850 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00638 * 180.02562 * 4 3 2 7 7 C 1.46955 * 120.59886 * 179.97438 * 6 4 3 8 8 C 1.53374 * 108.63601 * 235.20601 * 7 6 4 9 9 N 1.46966 * 108.63261 * 310.57295 * 8 7 6 10 10 C 1.34775 * 120.59463 * 235.20404 * 9 8 7 11 11 O 1.21681 * 120.00060 * 185.19074 * 10 9 8 12 12 C 1.46377 * 119.99979 * 4.91154 * 10 9 8 13 13 H 1.07997 * 119.99583 * 355.00551 * 12 10 9 14 14 C 1.40046 * 119.99909 * 174.99686 * 12 10 9 15 15 N 1.30673 * 120.00102 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00036 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47277 * 90.00265 * 16 14 12 18 18 H 1.48498 * 109.47144 * 210.00520 * 16 14 12 19 19 H 1.48497 * 109.47056 * 330.00262 * 16 14 12 20 20 C 1.46960 * 118.80989 * 55.47807 * 9 8 7 21 21 C 1.46972 * 120.58759 * 359.97438 * 6 4 3 22 22 C 1.46896 * 111.00219 * 123.95352 * 2 1 3 23 23 H 1.09008 * 110.01791 * 294.65396 * 22 2 1 24 24 C 1.54262 * 110.03434 * 173.21571 * 22 2 1 25 25 C 1.54889 * 104.19733 * 217.10723 * 24 22 2 26 26 C 1.54886 * 102.74850 * 37.93721 * 25 24 22 27 27 C 1.53876 * 110.03170 * 56.04499 * 22 2 1 28 28 H 1.08993 * 110.03248 * 0.02562 * 27 22 2 29 29 O 1.42905 * 110.03049 * 238.56817 * 27 22 2 30 30 H 1.08998 * 109.47297 * 59.99881 * 1 2 3 31 31 H 1.09000 * 109.46690 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46780 * 299.99907 * 1 2 3 33 33 H 1.09003 * 109.47111 * 173.95501 * 3 2 1 34 34 H 1.09005 * 109.47577 * 53.95036 * 3 2 1 35 35 H 1.08999 * 109.61083 * 115.45785 * 7 6 4 36 36 H 1.09005 * 109.75274 * 355.03370 * 7 6 4 37 37 H 1.09006 * 109.60847 * 190.83150 * 8 7 6 38 38 H 1.08997 * 109.60648 * 70.32177 * 8 7 6 39 39 H 0.96996 * 119.99924 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.61267 * 64.26487 * 20 9 8 41 41 H 1.09003 * 109.61257 * 184.77188 * 20 9 8 42 42 H 1.08994 * 109.60744 * 244.53637 * 21 6 4 43 43 H 1.08995 * 109.60939 * 4.88077 * 21 6 4 44 44 H 1.09007 * 110.48655 * 335.78184 * 24 22 2 45 45 H 1.08995 * 110.49276 * 98.42632 * 24 22 2 46 46 H 1.09002 * 110.75389 * 279.62480 * 25 24 22 47 47 H 1.09000 * 110.91690 * 156.32751 * 25 24 22 48 48 H 1.09001 * 110.48786 * 203.38324 * 26 25 24 49 49 H 1.09003 * 110.59949 * 80.79177 * 26 25 24 50 50 H 0.96702 * 113.99232 * 180.02562 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4454 -2.1411 6 7 2.0188 3.3199 -1.5238 7 6 1.6767 3.9913 -2.7855 8 6 2.9680 4.5097 -3.4306 9 7 3.7336 5.2512 -2.4186 10 6 4.1155 6.5239 -2.6439 11 8 4.8286 7.0963 -1.8411 12 6 3.6776 7.2156 -3.8574 13 1 3.1164 6.6821 -4.6102 14 6 3.9862 8.5691 -4.0419 15 7 4.6655 9.2144 -3.1311 16 14 3.4268 9.4520 -5.5901 17 1 2.0842 10.0450 -5.3641 18 1 4.3939 10.5286 -5.9229 19 1 3.3574 8.4841 -6.7142 20 6 4.0805 4.5780 -1.1592 21 6 2.7849 4.0612 -0.5120 22 6 1.9955 -0.7659 1.1375 23 1 1.7304 -0.2739 2.0734 24 6 3.5284 -0.8954 1.0233 25 6 3.8289 -2.3229 1.5440 26 6 2.6401 -3.1463 0.9894 27 6 1.4306 -2.1971 1.1160 28 1 0.7662 -2.3234 0.2613 29 8 0.7246 -2.4629 2.3297 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.0798 1.3444 0.1082 34 1 1.5611 1.9275 0.8309 35 1 1.0067 4.8273 -2.5850 36 1 1.1896 3.2853 -3.4581 37 1 2.7220 5.1718 -4.2608 38 1 3.5591 3.6687 -3.7929 39 1 4.8796 10.1518 -3.2591 40 1 4.7490 3.7416 -1.3635 41 1 4.5694 5.2850 -0.4890 42 1 2.1939 4.9022 -0.1494 43 1 3.0285 3.3998 0.3194 44 1 3.8435 -0.7940 -0.0153 45 1 4.0219 -0.1502 1.6471 46 1 3.8375 -2.3427 2.6338 47 1 4.7738 -2.6918 1.1450 48 1 2.4851 -4.0436 1.5885 49 1 2.8101 -3.4103 -0.0544 50 1 0.3446 -3.3509 2.3771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362109985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -94.683515 kcal Electronic energy + Delta-G solvation = -30655.494743 eV Core-core repulsion = 26490.312266 eV Total energy + Delta-G solvation = -4165.182476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36098 -39.42197 -37.99274 -36.33452 -35.73126 -34.60404 -33.12740 -32.58240 -31.04914 -29.25063 -28.64828 -27.46031 -26.82228 -25.96083 -24.09545 -23.05974 -21.91067 -21.17196 -20.01031 -19.75804 -18.44022 -17.72388 -17.29164 -16.39897 -16.22479 -15.96512 -15.58903 -15.55318 -15.46260 -14.70662 -14.57799 -14.27905 -14.18684 -14.11217 -13.91180 -13.48386 -13.18949 -12.88698 -12.84326 -12.58590 -12.42580 -12.07394 -11.94068 -11.81636 -11.63608 -11.46932 -11.42117 -11.29938 -11.18205 -11.07772 -11.03601 -10.91590 -10.80658 -10.70250 -10.28984 -10.15963 -10.13141 -9.54368 -8.93958 -8.66074 -8.47487 -7.68604 -7.28540 -6.27718 -4.73010 2.74308 2.93472 3.09635 3.17314 3.20086 3.57575 4.00561 4.02673 4.17431 4.41841 4.44514 4.47591 4.56681 4.66965 4.93925 5.02319 5.05737 5.16620 5.18383 5.25021 5.30272 5.32006 5.38553 5.40590 5.50539 5.51896 5.54101 5.57204 5.61943 5.66322 5.71460 5.76094 5.90433 5.93250 5.99732 6.04423 6.08886 6.27958 6.32145 6.49946 6.65645 6.77690 6.86087 7.32132 7.38439 7.46268 7.57876 8.03057 8.24325 8.33416 8.94614 9.31081 10.47998 10.66586 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.002256 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.277825 B =12406.977184 C =12934.973760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.516 5.516 3 C 0.037 3.963 4 C 0.516 3.484 5 O -0.532 6.532 6 N -0.606 5.606 7 C 0.097 3.903 8 C 0.110 3.890 9 N -0.643 5.643 10 C 0.559 3.441 11 O -0.577 6.577 12 C -0.544 4.544 13 H 0.074 0.926 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.264 1.264 20 C 0.107 3.893 21 C 0.093 3.907 22 C 0.086 3.914 23 H 0.057 0.943 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.152 4.152 27 C 0.101 3.899 28 H 0.072 0.928 29 O -0.568 6.568 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.269 0.731 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 -21.231 8.446 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.241 5.241 3 C -0.094 4.094 4 C 0.303 3.697 5 O -0.409 6.409 6 N -0.340 5.340 7 C -0.026 4.026 8 C -0.015 4.015 9 N -0.382 5.382 10 C 0.366 3.634 11 O -0.459 6.459 12 C -0.580 4.580 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.018 4.018 21 C -0.031 4.031 22 C -0.022 4.022 23 H 0.075 0.925 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.190 4.190 27 C 0.042 3.958 28 H 0.090 0.910 29 O -0.373 6.373 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.751 -20.640 8.201 22.942 hybrid contribution -0.714 0.281 -0.075 0.771 sum -6.465 -20.359 8.127 22.855 Atomic orbital electron populations 1.22623 0.86495 1.02360 1.01705 1.61798 1.08804 1.11763 1.41745 1.22012 1.02238 0.89518 0.95617 1.20363 0.79500 0.81065 0.88752 1.90631 1.40094 1.63598 1.46602 1.48096 1.54836 1.12391 1.18691 1.22110 0.98253 0.96920 0.85299 1.21821 0.90824 0.96131 0.92771 1.48187 1.59563 1.14431 1.15981 1.18278 0.79762 0.77897 0.87498 1.90592 1.40555 1.65100 1.49673 1.20957 1.37629 0.95252 1.04207 0.90834 1.25727 0.93113 0.97545 0.96839 1.70004 1.28120 1.09440 1.31970 0.86380 0.78951 0.79398 0.82137 1.19692 1.20418 1.18795 1.21559 0.93988 0.96953 0.89293 1.22325 0.94211 0.96291 0.90278 1.22218 0.94870 0.92799 0.92352 0.92541 1.22488 0.93509 0.97291 1.02533 1.22402 0.97954 0.94736 1.00594 1.23026 0.95953 0.98147 1.01877 1.22469 0.92619 0.93935 0.86776 0.91029 1.86511 1.73469 1.37512 1.39843 0.89114 0.91361 0.96062 0.87666 0.91948 0.91163 0.88906 0.87647 0.93517 0.92001 0.93479 0.88562 0.90881 0.90110 0.89885 0.91227 0.91314 0.91204 0.91224 0.90494 0.77531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.89 60.07 0.53 0.72 16 2 N -0.52 -5.97 4.29 -234.97 -1.01 -6.97 16 3 C 0.04 0.42 3.66 -4.98 -0.02 0.41 16 4 C 0.52 7.56 7.42 -10.98 -0.08 7.48 16 5 O -0.53 -9.26 13.72 5.55 0.08 -9.18 16 6 N -0.61 -9.09 2.95 -172.24 -0.51 -9.60 16 7 C 0.10 1.56 6.59 -3.60 -0.02 1.54 16 8 C 0.11 1.99 6.50 -3.59 -0.02 1.97 16 9 N -0.64 -13.88 2.94 -173.90 -0.51 -14.39 16 10 C 0.56 15.23 7.62 -12.99 -0.10 15.14 16 11 O -0.58 -17.91 14.46 5.21 0.08 -17.83 16 12 C -0.54 -14.65 8.88 -35.63 -0.32 -14.96 16 13 H 0.07 1.80 5.63 -52.49 -0.30 1.50 16 14 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 15 N -0.77 -22.30 11.84 55.55 0.66 -21.64 16 16 Si 0.91 19.51 29.56 -169.99 -5.02 14.49 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 C 0.11 1.91 6.61 -3.39 -0.02 1.89 16 21 C 0.09 1.32 6.52 -3.38 -0.02 1.30 16 22 C 0.09 0.85 2.48 -66.60 -0.17 0.68 16 23 H 0.06 0.61 7.96 -51.92 -0.41 0.20 16 24 C -0.12 -1.04 5.11 -25.07 -0.13 -1.17 16 25 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 26 C -0.15 -1.09 6.56 -25.07 -0.16 -1.26 16 27 C 0.10 0.87 3.36 -25.61 -0.09 0.78 16 28 H 0.07 0.65 6.10 -51.93 -0.32 0.34 16 29 O -0.57 -4.79 13.21 -35.23 -0.47 -5.25 16 30 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 31 H 0.07 0.71 5.97 -51.93 -0.31 0.40 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.11 1.07 6.42 -51.93 -0.33 0.74 16 34 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 37 H 0.11 1.98 5.29 -51.93 -0.27 1.70 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.90 7.02 -51.93 -0.36 1.53 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 0.87 5.91 -51.93 -0.31 0.56 16 44 H 0.08 0.80 7.96 -51.93 -0.41 0.38 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.41 8.06 -51.93 -0.42 -0.01 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.38 1.58 9.10 45.56 0.41 2.00 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -35.25 384.66 -8.84 -44.09 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.05 Total: 4.77 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: -0.88 Total: 15.73 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -1.37 Total: -52.60 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.31 Total: -32.27 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.25 -8.84 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362109985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.593 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds