Wall clock time and date at job start Sat Apr 11 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99785 * 2 1 4 4 C 1.53002 * 109.47049 * 179.97438 * 3 2 1 5 5 C 1.50700 * 115.54985 * 294.85237 * 4 3 2 6 6 O 1.21274 * 120.00304 * 99.24230 * 5 4 3 7 7 N 1.34778 * 120.00087 * 279.24723 * 5 4 3 8 8 C 1.46500 * 120.00478 * 174.98600 * 7 5 4 9 9 C 1.52992 * 109.47414 * 179.97438 * 8 7 5 10 10 H 1.09004 * 112.90913 * 316.25609 * 9 8 7 11 11 C 1.53783 * 113.61661 * 87.50369 * 9 8 7 12 12 C 1.53773 * 87.08532 * 139.98170 * 11 9 8 13 13 H 1.09004 * 113.69060 * 89.12274 * 12 11 9 14 14 N 1.46900 * 113.61930 * 220.02383 * 12 11 9 15 15 C 1.46899 * 110.99576 * 252.49692 * 14 12 11 16 16 C 1.50703 * 109.46913 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00154 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00236 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99658 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00349 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99971 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47029 * 89.99779 * 23 21 19 25 25 H 1.48496 * 109.46766 * 209.99925 * 23 21 19 26 26 H 1.48501 * 109.46703 * 329.99673 * 23 21 19 27 27 C 1.53775 * 113.61733 * 185.00098 * 9 8 7 28 28 C 1.52995 * 117.52062 * 80.55163 * 4 3 2 29 29 C 1.52997 * 60.00108 * 107.48085 * 28 4 3 30 30 H 1.09003 * 109.46873 * 60.00722 * 1 2 3 31 31 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47719 * 300.00219 * 1 2 3 33 33 H 1.08997 * 109.47585 * 59.99968 * 3 2 1 34 34 H 1.09001 * 109.47470 * 299.99419 * 3 2 1 35 35 H 0.97003 * 119.99856 * 354.98709 * 7 5 4 36 36 H 1.09005 * 109.46742 * 59.99488 * 8 7 5 37 37 H 1.08993 * 109.46902 * 300.00321 * 8 7 5 38 38 H 1.09004 * 113.61192 * 25.42704 * 11 9 8 39 39 H 1.09004 * 113.61173 * 254.53588 * 11 9 8 40 40 H 1.00902 * 110.99682 * 16.44456 * 14 12 11 41 41 H 1.08994 * 109.47235 * 299.99170 * 15 14 12 42 42 H 1.09001 * 109.47536 * 60.00217 * 15 14 12 43 43 H 0.96995 * 119.99912 * 0.02562 * 18 16 15 44 44 H 0.96998 * 120.00484 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.61483 * 105.46918 * 27 9 8 46 46 H 1.09000 * 113.61359 * 334.57270 * 27 9 8 47 47 H 1.09003 * 117.50250 * 214.97130 * 28 4 3 48 48 H 1.09002 * 117.49820 * 359.97438 * 28 4 3 49 49 H 1.08998 * 117.50067 * 252.51086 * 29 28 4 50 50 H 1.09004 * 117.49723 * 107.49188 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1378 0.5639 1.2347 6 8 4.4602 -0.6051 1.2299 7 7 4.3180 1.3080 2.3439 8 6 4.8004 0.6804 3.5767 9 6 4.9175 1.7384 4.6756 10 1 5.3713 2.6656 4.3254 11 6 3.6166 1.9503 5.4679 12 6 4.4932 2.0590 6.7266 13 1 4.8318 3.0733 6.9383 14 7 3.9195 1.3918 7.9028 15 6 3.4295 2.3746 8.8786 16 6 2.8489 1.6546 10.0684 17 8 2.8441 0.4421 10.1005 18 7 2.3358 2.3580 11.0972 19 6 1.8080 1.7030 12.1798 20 1 1.8038 0.6233 12.2084 21 6 1.2786 2.4281 13.2402 22 7 1.2841 3.7418 13.2057 23 14 0.5601 1.5357 14.7157 24 1 1.6256 1.3112 15.7254 25 1 -0.5224 2.3583 15.3128 26 1 0.0060 0.2281 14.2815 27 6 5.5327 1.2059 5.9805 28 6 4.2231 0.9066 -1.3374 29 6 4.3320 2.2906 -0.6945 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 4.1283 2.2592 2.3260 36 1 5.7781 0.2329 3.3980 37 1 4.0987 -0.0927 3.8894 38 1 2.9587 1.0812 5.4676 39 1 3.0977 2.8753 5.2159 40 1 3.1864 0.7526 7.6342 41 1 4.2558 3.0067 9.2038 42 1 2.6593 2.9923 8.4168 43 1 2.3399 3.3276 11.0717 44 1 0.9149 4.2480 13.9461 45 1 6.5608 1.5298 6.1425 46 1 5.3988 0.1332 6.1204 47 1 5.1112 0.2747 -1.3252 48 1 3.5889 0.8092 -2.2186 49 1 3.7694 3.1041 -1.1527 50 1 5.2917 2.5693 -0.2592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479307035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:35 Heat of formation + Delta-G solvation = -100.399579 kcal Electronic energy + Delta-G solvation = -28542.809489 eV Core-core repulsion = 24377.379146 eV Total energy + Delta-G solvation = -4165.430344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33088 -40.50347 -39.80680 -38.85281 -37.23927 -36.23149 -35.80153 -34.38859 -33.24070 -29.72112 -29.12159 -27.88529 -26.61798 -26.55123 -25.83262 -24.12826 -23.36011 -22.39477 -21.35168 -20.93231 -20.16615 -19.82367 -18.30337 -17.78198 -17.31410 -17.08375 -16.89521 -16.85295 -16.69450 -16.35639 -16.16472 -15.94491 -15.69518 -15.47641 -15.17938 -14.96537 -14.50105 -14.36356 -13.97419 -13.56255 -13.52260 -13.39458 -13.34464 -13.27004 -12.99382 -12.84563 -12.65110 -12.52169 -12.42946 -12.36787 -12.13674 -11.91354 -11.70198 -11.53099 -11.50402 -11.29327 -11.22479 -10.83409 -10.58464 -10.33302 -10.11477 -10.02147 -9.20559 -8.47427 -5.96147 1.37471 1.41290 1.53940 1.54874 2.04894 2.08832 2.29001 2.37409 2.97086 3.06294 3.19826 3.48651 3.56841 3.61932 3.64030 3.75822 3.91359 3.94245 4.03336 4.07055 4.27313 4.33250 4.35319 4.42715 4.45418 4.49935 4.52273 4.59497 4.60302 4.69032 4.71272 4.79561 4.82655 4.86976 4.88247 4.93176 4.96034 5.13469 5.16395 5.22693 5.36890 5.40431 5.50609 5.94340 6.18557 6.20963 6.42092 6.54756 6.60027 7.12155 7.23736 7.55816 8.11647 8.69869 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.001650 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.282550 B =16967.955723 C =17759.925769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.103 3.897 4 C -0.181 4.181 5 C 0.546 3.454 6 O -0.584 6.584 7 N -0.709 5.709 8 C 0.134 3.866 9 C -0.099 4.099 10 H 0.126 0.874 11 C -0.158 4.158 12 C 0.062 3.938 13 H 0.115 0.885 14 N -0.677 5.677 15 C 0.066 3.934 16 C 0.434 3.566 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.274 1.274 27 C -0.120 4.120 28 C -0.150 4.150 29 C -0.120 4.120 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.417 0.583 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.343 0.657 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.117 0.883 49 H 0.137 0.863 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 7.055 -30.774 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.027 3.973 4 C -0.184 4.184 5 C 0.333 3.667 6 O -0.464 6.464 7 N -0.361 5.361 8 C 0.010 3.990 9 C -0.118 4.118 10 H 0.144 0.856 11 C -0.197 4.197 12 C -0.048 4.048 13 H 0.132 0.868 14 N -0.308 5.308 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.159 4.159 28 C -0.188 4.188 29 C -0.156 4.156 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.162 0.838 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.135 0.865 49 H 0.155 0.845 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.645 5.324 -30.246 31.060 hybrid contribution -1.514 0.416 0.723 1.728 sum 3.131 5.740 -29.523 30.238 Atomic orbital electron populations 1.22899 0.79422 1.03520 1.01122 1.87968 1.21370 1.28950 1.95627 1.22027 0.88098 0.84678 1.02499 1.21376 0.94881 1.09032 0.93108 1.19950 0.76766 0.85565 0.84394 1.90682 1.52108 1.19069 1.84508 1.45851 1.67213 1.13030 1.10016 1.21274 0.98889 0.95512 0.83322 1.22539 0.97587 0.99177 0.92486 0.85627 1.23747 0.96697 1.02544 0.96742 1.23207 0.96420 0.98430 0.86702 0.86759 1.60036 1.39000 1.18161 1.13572 1.21579 0.99926 0.94025 0.91053 1.21016 0.82740 0.88038 0.85991 1.90494 1.62742 1.16049 1.82048 1.41930 1.53215 1.09299 1.16538 1.19660 1.37078 0.92878 0.96906 0.90516 1.26026 0.97473 0.96341 1.01358 1.69661 1.46269 1.05913 1.34128 0.84936 0.78129 0.77878 0.77435 1.19663 1.19370 1.19931 1.23051 0.99280 1.00129 0.93435 1.23016 1.02037 0.99741 0.93986 1.23303 1.00917 0.91818 0.99592 0.92014 0.89579 0.93472 0.91687 0.89455 0.74631 0.92174 0.93611 0.91255 0.89633 0.83781 0.87656 0.91384 0.76886 0.91255 0.89967 0.91149 0.89714 0.86505 0.84530 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.52 10.63 -148.98 -1.58 -10.10 16 3 C 0.10 1.34 5.76 71.98 0.41 1.75 16 4 C -0.18 -2.63 2.13 -52.93 -0.11 -2.74 16 5 C 0.55 11.95 6.91 87.66 0.61 12.56 16 6 O -0.58 -19.23 17.01 -3.01 -0.05 -19.28 16 7 N -0.71 -11.07 5.55 -463.08 -2.57 -13.64 16 8 C 0.13 2.46 5.52 86.38 0.48 2.94 16 9 C -0.10 -1.37 3.75 -10.27 -0.04 -1.41 16 10 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 11 C -0.16 -2.66 7.25 31.12 0.23 -2.43 16 12 C 0.06 1.30 4.18 45.44 0.19 1.49 16 13 H 0.11 2.00 7.87 -2.38 -0.02 1.98 16 14 N -0.68 -21.09 6.24 -492.86 -3.08 -24.17 16 15 C 0.07 2.23 6.01 85.56 0.51 2.74 16 16 C 0.43 20.86 7.82 87.66 0.69 21.55 16 17 O -0.63 -35.51 15.78 -3.07 -0.05 -35.56 16 18 N -0.57 -29.51 5.29 -306.98 -1.62 -31.13 16 19 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 23 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.12 -2.27 7.44 31.12 0.23 -2.04 16 28 C -0.15 -1.93 9.88 30.59 0.30 -1.63 16 29 C -0.12 -0.77 9.92 30.59 0.30 -0.47 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.63 8.09 -2.39 -0.02 0.61 16 35 H 0.42 3.57 8.48 -92.71 -0.79 2.78 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.05 1.08 7.84 -2.39 -0.02 1.06 16 38 H 0.07 1.43 7.58 -2.39 -0.02 1.42 16 39 H 0.09 1.14 8.14 -2.38 -0.02 1.13 16 40 H 0.34 11.59 7.89 -89.69 -0.71 10.88 16 41 H 0.11 3.14 8.13 -2.39 -0.02 3.12 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.40 19.24 7.90 -92.71 -0.73 18.50 16 44 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -80.76 420.40 -1.58 -82.34 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -1.26 Total: 40.21 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.33 Total: 15.27 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -6.99 Total: -118.06 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -1.68 Total: -64.94 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -80.76 -1.58 -82.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479307035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.059 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds