Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 111.00320 * 2 1 4 4 C 1.53001 * 109.46671 * 293.95264 * 3 2 1 5 5 C 1.53004 * 109.46826 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47010 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99946 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.99937 * 179.97438 * 7 6 5 10 10 H 1.08995 * 115.59931 * 61.66891 * 9 7 6 11 11 C 1.53252 * 117.53157 * 207.53826 * 9 7 6 12 12 C 1.51767 * 59.68117 * 107.39932 * 11 9 7 13 13 C 1.53679 * 122.36593 * 248.26434 * 12 11 9 14 14 C 1.54365 * 103.92951 * 197.03220 * 13 12 11 15 15 O 1.43839 * 107.31492 * 357.18398 * 14 13 12 16 16 C 1.44619 * 107.22101 * 26.12961 * 15 14 13 17 17 C 1.46907 * 110.99926 * 123.95313 * 2 1 3 18 18 C 1.50699 * 109.47179 * 66.04231 * 17 2 1 19 19 O 1.21294 * 119.99993 * 0.02562 * 18 17 2 20 20 N 1.34777 * 120.00005 * 179.97438 * 18 17 2 21 21 C 1.37096 * 120.00023 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00061 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00234 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00115 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00074 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47341 * 89.99682 * 25 23 21 27 27 H 1.48499 * 109.47520 * 210.00248 * 25 23 21 28 28 H 1.48512 * 109.46771 * 330.00054 * 25 23 21 29 29 H 1.08995 * 109.46869 * 60.00497 * 1 2 3 30 30 H 1.09002 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46481 * 300.00146 * 1 2 3 32 32 H 1.09004 * 109.47034 * 173.95599 * 3 2 1 33 33 H 1.08995 * 109.47060 * 53.94961 * 3 2 1 34 34 H 1.09000 * 109.47322 * 59.99931 * 4 3 2 35 35 H 1.09006 * 109.47592 * 299.99590 * 4 3 2 36 36 H 1.09004 * 109.46859 * 60.00347 * 5 4 3 37 37 H 1.08995 * 109.47520 * 300.00109 * 5 4 3 38 38 H 0.97004 * 120.00526 * 359.97438 * 6 5 4 39 39 H 1.08998 * 117.53190 * 359.97438 * 11 9 7 40 40 H 1.09000 * 117.52993 * 214.79823 * 11 9 7 41 41 H 1.09004 * 110.56221 * 78.37488 * 13 12 11 42 42 H 1.09005 * 110.55771 * 315.68398 * 13 12 11 43 43 H 1.09008 * 109.87842 * 116.61080 * 14 13 12 44 44 H 1.08994 * 109.87689 * 237.74894 * 14 13 12 45 45 H 1.08994 * 110.64498 * 79.84271 * 16 15 14 46 46 H 1.09001 * 110.64272 * 202.74740 * 16 15 14 47 47 H 1.08994 * 109.47373 * 186.04378 * 17 2 1 48 48 H 1.08997 * 109.47004 * 306.04681 * 17 2 1 49 49 H 0.96996 * 119.99819 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99486 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1794 3.4859 -1.3181 6 7 1.8314 4.1425 -2.5806 7 6 2.2131 5.4153 -2.8058 8 8 2.8450 6.0169 -1.9634 9 6 1.8556 6.0906 -4.1048 10 1 0.7890 6.1970 -4.3023 11 6 2.7829 7.2045 -4.6028 12 6 2.7690 5.8532 -5.2936 13 6 3.9620 4.8863 -5.2337 14 6 3.6969 3.8971 -6.3887 15 8 2.4335 4.2539 -6.9764 16 6 2.2261 5.6626 -6.7233 17 6 1.9955 -0.7660 1.1377 18 6 1.6369 -2.2204 0.9730 19 8 1.0054 -2.5833 0.0031 20 7 2.0188 -3.1181 1.9029 21 6 1.6931 -4.4413 1.7529 22 1 1.1307 -4.7644 0.8893 23 6 2.0863 -5.3667 2.7118 24 7 1.7745 -6.6352 2.5676 25 14 3.0584 -4.8078 4.2059 26 1 2.1209 -4.4451 5.2990 27 1 3.9455 -5.9089 4.6595 28 1 3.8815 -3.6250 3.8467 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.0799 1.3442 0.1082 33 1 1.5612 1.9273 0.8308 34 1 0.5473 2.0843 -1.4266 35 1 2.0659 1.5014 -2.1493 36 1 3.2637 3.4591 -1.2097 37 1 1.7448 4.0416 -0.4873 38 1 1.3270 3.6610 -3.2549 39 1 3.6509 7.4488 -3.9905 40 1 2.3260 8.0434 -5.1277 41 1 3.9827 4.3625 -4.2780 42 1 4.8974 5.4221 -5.3956 43 1 4.4882 3.9771 -7.1342 44 1 3.6513 2.8792 -6.0017 45 1 2.7924 6.2677 -7.4312 46 1 1.1655 5.9095 -6.7709 47 1 3.0797 -0.6612 1.1757 48 1 1.5611 -0.3873 2.0628 49 1 2.5242 -2.8280 2.6783 50 1 2.0494 -7.2812 3.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479806637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -108.550463 kcal Electronic energy + Delta-G solvation = -28843.409716 eV Core-core repulsion = 24677.625924 eV Total energy + Delta-G solvation = -4165.783792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57711 -40.51686 -39.96679 -38.34314 -36.90543 -36.23380 -35.81052 -33.74771 -32.62389 -31.42865 -29.55020 -28.65458 -27.69671 -26.59644 -25.03047 -23.60616 -23.38270 -22.09419 -21.38451 -21.24013 -20.41227 -20.14387 -18.18902 -17.85620 -17.35111 -17.05498 -16.88045 -16.84901 -16.79773 -16.36924 -16.30713 -15.98198 -15.56586 -15.33746 -15.11592 -14.85082 -14.70206 -14.39965 -14.28396 -13.76936 -13.70188 -13.43657 -13.36230 -13.14655 -13.07632 -12.85223 -12.72864 -12.54042 -12.53345 -12.39201 -12.32824 -11.98399 -11.97740 -11.65779 -11.46508 -11.45698 -11.22388 -10.87117 -10.55075 -10.35974 -10.22171 -10.13904 -9.19969 -8.40497 -6.01003 1.30517 1.35579 1.44591 1.45709 1.97271 2.03166 2.23372 2.55147 2.66123 3.03152 3.15810 3.25845 3.30632 3.58665 3.75138 3.81321 3.94718 3.96572 4.07583 4.11473 4.13648 4.24539 4.39142 4.41252 4.43314 4.51297 4.54045 4.59952 4.62582 4.68465 4.73832 4.74160 4.78449 4.83280 4.85450 4.93694 4.96853 5.08410 5.09477 5.18424 5.28437 5.41379 5.54091 5.86924 5.90873 6.02337 6.21362 6.47947 6.61070 6.89834 7.17181 7.41305 7.98894 8.77126 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.001694 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.375113 B =16525.983744 C =17077.378616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.060 3.940 4 C -0.115 4.115 5 C 0.127 3.873 6 N -0.715 5.715 7 C 0.541 3.459 8 O -0.582 6.582 9 C -0.175 4.175 10 H 0.154 0.846 11 C -0.118 4.118 12 C -0.141 4.141 13 C -0.125 4.125 14 C 0.049 3.951 15 O -0.397 6.397 16 C 0.083 3.917 17 C 0.054 3.946 18 C 0.451 3.549 19 O -0.605 6.605 20 N -0.593 5.593 21 C -0.326 4.326 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.414 0.586 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.078 0.922 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 32.072 -12.608 34.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.068 4.068 4 C -0.153 4.153 5 C 0.003 3.997 6 N -0.366 5.366 7 C 0.328 3.672 8 O -0.462 6.462 9 C -0.196 4.196 10 H 0.172 0.828 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.162 4.162 14 C -0.028 4.028 15 O -0.317 6.317 16 C 0.007 3.993 17 C -0.078 4.078 18 C 0.239 3.761 19 O -0.489 6.489 20 N -0.235 5.235 21 C -0.455 4.455 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.250 0.750 39 H 0.112 0.888 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.128 0.872 47 H 0.137 0.863 48 H 0.096 0.904 49 H 0.224 0.776 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.972 31.642 -13.129 34.487 hybrid contribution -0.022 -0.516 1.531 1.616 sum 3.950 31.125 -11.599 33.450 Atomic orbital electron populations 1.22459 0.86984 1.02064 1.00869 1.61477 1.08830 1.13785 1.42465 1.22079 1.01023 0.86596 0.97128 1.21634 1.02034 0.93216 0.98457 1.21215 1.00195 0.92395 0.85881 1.45959 1.57201 1.13319 1.20089 1.20047 0.77875 0.81451 0.87805 1.90694 1.41815 1.65538 1.48143 1.22312 1.00660 1.05060 0.91560 0.82841 1.22893 1.00714 0.91506 1.00427 1.22240 0.98030 1.00003 0.93918 1.22395 0.97938 0.96444 0.99451 1.23241 0.86233 0.99069 0.94225 1.88922 1.38793 1.25746 1.78201 1.23142 1.02632 0.82195 0.91296 1.21838 1.02771 0.89279 0.93872 1.20919 0.82912 0.88888 0.83412 1.90515 1.44158 1.81465 1.32746 1.42051 1.51801 1.06814 1.22872 1.18991 1.34671 0.83168 1.08701 0.92650 1.26109 0.98716 0.94680 1.01971 1.69809 1.47363 1.02983 1.37432 0.85373 0.78897 0.79663 0.77638 1.18222 1.20089 1.15434 0.90059 0.93084 0.94971 0.89468 0.93320 0.90601 0.90741 0.91888 0.91750 0.75020 0.88792 0.84756 0.91659 0.89025 0.91031 0.89768 0.89743 0.87154 0.86282 0.90442 0.77564 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 8.96 127.69 1.14 1.85 16 2 N -0.54 -15.56 4.50 -927.05 -4.17 -19.73 16 3 C 0.06 1.16 4.96 86.30 0.43 1.59 16 4 C -0.12 -1.90 5.25 30.60 0.16 -1.74 16 5 C 0.13 2.04 5.67 86.38 0.49 2.53 16 6 N -0.71 -10.62 5.56 -463.05 -2.57 -13.19 16 7 C 0.54 9.81 6.20 87.66 0.54 10.35 16 8 O -0.58 -15.40 16.62 -3.02 -0.05 -15.45 16 9 C -0.18 -2.04 6.09 -11.85 -0.07 -2.11 16 10 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 11 C -0.12 -1.16 9.86 30.27 0.30 -0.86 16 12 C -0.14 -1.45 2.40 -52.38 -0.13 -1.58 16 13 C -0.12 -1.50 6.66 31.29 0.21 -1.29 16 14 C 0.05 0.61 7.72 72.45 0.56 1.17 16 15 O -0.40 -6.10 11.53 -148.98 -1.72 -7.82 16 16 C 0.08 0.75 7.57 72.36 0.55 1.30 16 17 C 0.05 1.62 5.45 85.56 0.47 2.09 16 18 C 0.45 20.28 7.47 87.66 0.66 20.93 16 19 O -0.60 -33.21 13.91 -3.07 -0.04 -33.25 16 20 N -0.59 -27.96 5.09 -306.99 -1.56 -29.52 16 21 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 23 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 24 N -0.94 -56.54 13.96 21.66 0.30 -56.24 16 25 Si 0.96 38.82 27.74 68.60 1.90 40.72 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 27 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 28 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 29 H 0.08 2.01 6.47 -2.39 -0.02 1.99 16 30 H 0.05 1.98 5.82 -2.39 -0.01 1.96 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.53 7.93 -2.39 -0.02 1.51 16 33 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 34 H 0.08 1.21 6.55 -2.39 -0.02 1.19 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 4.67 8.47 -92.71 -0.79 3.89 16 39 H 0.09 1.26 7.94 -2.39 -0.02 1.24 16 40 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.98 6.99 -2.38 -0.02 0.96 16 42 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 47 H 0.12 2.96 7.93 -2.39 -0.02 2.94 16 48 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 49 H 0.39 15.15 5.76 -92.71 -0.53 14.61 16 50 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -82.54 404.93 -1.71 -84.24 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.42 Total: 34.72 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.63 Total: 15.53 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -8.00 Total: -118.69 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -1.81 Total: -56.52 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.72 kcal Total: -82.54 -1.71 -84.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479806637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.307 kcal (2) G-P(sol) polarization free energy of solvation -82.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds