Wall clock time and date at job start Sat Apr 11 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00301 * 2 1 4 4 C 1.52998 * 109.47332 * 293.95490 * 3 2 1 5 5 C 1.53000 * 109.47221 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47078 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00230 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00029 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00220 * 180.02562 * 7 6 5 10 10 H 1.08998 * 115.56719 * 34.41694 * 9 7 6 11 11 C 1.53185 * 117.52146 * 248.64355 * 9 7 6 12 12 C 1.52114 * 117.52241 * 180.19316 * 9 7 6 13 13 C 1.53709 * 121.75117 * 218.50762 * 12 9 7 14 14 C 1.54699 * 103.69618 * 143.51439 * 13 12 9 15 15 O 1.44498 * 104.86854 * 23.83605 * 14 13 12 16 16 C 1.44640 * 105.46081 * 320.02305 * 15 14 13 17 17 C 1.46903 * 110.99937 * 123.95669 * 2 1 3 18 18 C 1.50694 * 109.47066 * 66.04365 * 17 2 1 19 19 O 1.21297 * 120.00199 * 359.97438 * 18 17 2 20 20 N 1.34784 * 119.99988 * 180.02562 * 18 17 2 21 21 C 1.37096 * 119.99735 * 179.72439 * 20 18 17 22 22 H 1.07998 * 120.00618 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99464 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99620 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00237 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99788 * 25 23 21 27 27 H 1.48497 * 109.46972 * 209.99368 * 25 23 21 28 28 H 1.48494 * 109.47103 * 329.99983 * 25 23 21 29 29 H 1.09007 * 109.46841 * 296.04736 * 1 2 3 30 30 H 1.08999 * 109.47173 * 56.03978 * 1 2 3 31 31 H 1.08997 * 109.47372 * 176.04875 * 1 2 3 32 32 H 1.09003 * 109.47192 * 53.95804 * 3 2 1 33 33 H 1.08996 * 109.47188 * 173.95051 * 3 2 1 34 34 H 1.08997 * 109.47228 * 299.99835 * 4 3 2 35 35 H 1.09004 * 109.47108 * 59.99878 * 4 3 2 36 36 H 1.08997 * 109.47315 * 300.00308 * 5 4 3 37 37 H 1.09004 * 109.46749 * 60.00185 * 5 4 3 38 38 H 0.97000 * 120.00435 * 0.02562 * 6 5 4 39 39 H 1.09002 * 117.52574 * 359.97438 * 11 9 7 40 40 H 1.09001 * 117.52721 * 145.15287 * 11 9 7 41 41 H 1.08992 * 110.57992 * 262.07136 * 13 12 9 42 42 H 1.09006 * 110.58029 * 24.81386 * 13 12 9 43 43 H 1.08991 * 110.35680 * 142.68279 * 14 13 12 44 44 H 1.08998 * 110.36092 * 264.98555 * 14 13 12 45 45 H 1.09007 * 110.42171 * 280.89062 * 16 15 14 46 46 H 1.09003 * 110.41793 * 158.42802 * 16 15 14 47 47 H 1.08998 * 109.46809 * 306.04466 * 17 2 1 48 48 H 1.09002 * 109.47056 * 186.04207 * 17 2 1 49 49 H 0.97000 * 119.99339 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99478 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0575 -1.3182 5 6 2.1794 3.4860 -1.3179 6 7 1.8314 4.1427 -2.5804 7 6 2.2131 5.4155 -2.8055 8 8 2.8450 6.0172 -1.9631 9 6 1.8546 6.0912 -4.1039 10 1 0.8920 5.8096 -4.5307 11 6 2.9954 6.4055 -5.0768 12 6 2.3177 7.5267 -4.3005 13 6 1.4344 8.5732 -4.9987 14 6 1.7282 9.8779 -4.2212 15 8 3.0347 9.6758 -3.6379 16 6 3.0491 8.2999 -3.1919 17 6 1.9954 -0.7661 1.1376 18 6 1.6369 -2.2204 0.9728 19 8 1.0045 -2.5831 0.0033 20 7 2.0179 -3.1181 1.9032 21 6 1.6868 -4.4403 1.7561 22 1 1.1210 -4.7627 0.8945 23 6 2.0802 -5.3658 2.7151 24 7 1.7624 -6.6331 2.5743 25 14 3.0594 -4.8082 4.2049 26 1 2.1270 -4.4406 5.3007 27 1 3.9440 -5.9119 4.6571 28 1 3.8854 -3.6290 3.8413 29 1 -0.3633 0.4513 0.9234 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 1.5612 1.9273 0.8310 33 1 3.0797 1.3443 0.1083 34 1 2.0659 1.5016 -2.1491 35 1 0.5472 2.0845 -1.4265 36 1 1.7448 4.0417 -0.4870 37 1 3.2637 3.4592 -1.2095 38 1 1.3263 3.6615 -3.2544 39 1 4.0049 6.1238 -4.7773 40 1 2.7827 6.3315 -6.1433 41 1 1.7195 8.6783 -6.0454 42 1 0.3816 8.3033 -4.9148 43 1 1.7443 10.7292 -4.9016 44 1 0.9834 10.0298 -3.4400 45 1 2.5176 8.2013 -2.2453 46 1 4.0743 7.9431 -3.0924 47 1 1.5611 -0.3873 2.0627 48 1 3.0797 -0.6612 1.1756 49 1 2.5226 -2.8278 2.6790 50 1 2.0366 -7.2791 3.2440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479806638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:47 Heat of formation + Delta-G solvation = -79.534631 kcal Electronic energy + Delta-G solvation = -28363.244177 eV Core-core repulsion = 24198.718606 eV Total energy + Delta-G solvation = -4164.525571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97513 -39.30389 -38.83099 -37.14884 -36.26093 -35.27819 -33.92651 -31.85219 -31.64239 -30.80303 -28.19905 -27.77014 -26.73061 -25.10183 -24.09056 -23.14859 -22.51731 -21.27989 -20.61310 -19.79703 -19.35469 -18.25939 -17.58682 -16.79577 -16.46361 -16.22889 -16.07349 -15.63679 -15.55730 -15.17936 -15.11893 -14.95205 -14.47078 -14.33353 -13.93709 -13.80156 -13.46787 -13.41869 -13.10171 -12.81539 -12.64949 -12.45956 -12.40322 -12.20374 -11.91019 -11.82113 -11.78750 -11.49138 -11.40687 -11.36718 -11.03941 -11.01882 -10.81529 -10.60375 -10.51755 -10.30153 -9.98661 -9.85964 -9.54953 -9.42231 -8.60399 -8.19365 -7.98308 -6.32160 -3.83502 2.06256 2.65074 3.02068 3.05899 3.14433 3.17691 3.62224 3.72736 3.80595 3.90154 4.09465 4.13704 4.20612 4.39767 4.51452 4.66948 4.70581 4.75427 4.85726 4.90727 4.96839 4.97203 5.14738 5.20241 5.24977 5.28832 5.31177 5.38760 5.41284 5.44056 5.47055 5.48548 5.55156 5.62809 5.66880 5.79705 5.84017 5.89339 5.92888 5.99749 6.09454 6.41384 6.48235 7.10059 7.12792 7.27411 7.57646 7.83581 8.13588 8.59380 8.94327 9.41571 9.82620 10.80960 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036216 B = 0.001420 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.953221 B =19713.154643 C =20084.916107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.128 4.128 5 C 0.120 3.880 6 N -0.723 5.723 7 C 0.541 3.459 8 O -0.538 6.538 9 C -0.175 4.175 10 H 0.127 0.873 11 C -0.130 4.130 12 C -0.131 4.131 13 C -0.121 4.121 14 C 0.046 3.954 15 O -0.379 6.379 16 C 0.092 3.908 17 C 0.043 3.957 18 C 0.453 3.547 19 O -0.560 6.560 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.049 0.951 48 H 0.089 0.911 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 30.350 -12.582 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.374 5.374 7 C 0.327 3.673 8 O -0.415 6.415 9 C -0.196 4.196 10 H 0.145 0.855 11 C -0.167 4.167 12 C -0.132 4.132 13 C -0.158 4.158 14 C -0.030 4.030 15 O -0.298 6.298 16 C 0.016 3.984 17 C -0.088 4.088 18 C 0.239 3.761 19 O -0.442 6.442 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.067 0.933 48 H 0.108 0.892 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.246 30.213 -12.933 32.866 hybrid contribution -0.008 0.034 1.687 1.687 sum 0.238 30.248 -11.247 32.272 Atomic orbital electron populations 1.22609 0.86683 1.04744 0.98895 1.61542 1.08813 1.11326 1.42597 1.21998 1.00451 0.88871 0.95773 1.21785 1.01825 0.93442 0.99558 1.21356 1.00747 0.92712 0.85536 1.45941 1.57735 1.13547 1.20200 1.19628 0.78890 0.81459 0.87313 1.90704 1.39954 1.64284 1.46545 1.22245 1.01590 0.98704 0.97097 0.85486 1.23021 0.96580 0.99917 0.97221 1.22197 1.01268 0.89145 1.00590 1.22446 0.99559 0.93725 1.00094 1.23396 0.85868 0.97403 0.96382 1.89183 1.32694 1.28780 1.79130 1.22857 1.01299 0.79398 0.94882 1.21905 1.00822 0.94000 0.92116 1.19639 0.85105 0.86452 0.84951 1.90519 1.42686 1.79976 1.30988 1.42216 1.50881 1.08439 1.21537 1.19427 1.33515 0.80498 1.09913 0.86273 1.25034 0.97853 0.95118 0.98109 1.69624 1.45731 1.01201 1.35597 0.86678 0.80524 0.78881 0.83350 1.19679 1.20161 1.19468 0.96660 0.91994 0.88480 0.94850 0.90563 0.90055 0.91023 0.91449 0.91193 0.76260 0.87690 0.87243 0.89935 0.90004 0.89000 0.92170 0.90352 0.88685 0.93317 0.89239 0.79723 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.01 60.06 0.54 0.82 16 2 N -0.52 -7.89 4.50 -244.37 -1.10 -8.99 16 3 C 0.06 0.64 4.96 -3.83 -0.02 0.62 16 4 C -0.13 -1.14 5.26 -26.73 -0.14 -1.28 16 5 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 6 N -0.72 -5.33 5.56 -60.30 -0.33 -5.66 16 7 C 0.54 4.81 7.61 -10.99 -0.08 4.72 16 8 O -0.54 -6.60 13.83 5.55 0.08 -6.52 16 9 C -0.18 -1.09 6.08 -92.13 -0.56 -1.65 16 10 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 11 C -0.13 -0.74 10.01 -27.00 -0.27 -1.01 16 12 C -0.13 -0.92 2.51 -154.60 -0.39 -1.30 16 13 C -0.12 -0.63 6.88 -25.47 -0.18 -0.81 16 14 C 0.05 0.30 7.65 38.05 0.29 0.59 16 15 O -0.38 -3.79 11.65 -35.23 -0.41 -4.21 16 16 C 0.09 0.87 5.65 37.51 0.21 1.08 16 17 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 18 C 0.45 10.13 7.51 -10.98 -0.08 10.04 16 19 O -0.56 -14.65 13.88 5.54 0.08 -14.58 16 20 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 21 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 24 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 25 Si 0.88 19.24 27.73 -169.99 -4.71 14.53 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.77 6.30 -51.93 -0.33 0.45 16 31 H 0.10 1.82 5.88 -51.93 -0.31 1.51 16 32 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 33 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.62 6.47 -51.93 -0.34 0.28 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 2.04 8.47 -40.82 -0.35 1.69 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.84 7.04 -51.93 -0.37 0.47 16 46 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 47 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 48 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 49 H 0.37 7.66 5.77 -40.82 -0.24 7.43 16 50 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -34.76 402.19 -8.80 -43.56 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.21 Total: 8.81 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.97 Total: 5.83 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.72 Total: -53.49 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.26 Total: -25.30 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.76 -8.80 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479806638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.975 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds