Wall clock time and date at job start Sat Apr 11 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00301 * 2 1 4 4 C 1.52998 * 109.47332 * 293.95490 * 3 2 1 5 5 C 1.53000 * 109.47221 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47078 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00230 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00029 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00220 * 180.02562 * 7 6 5 10 10 H 1.08998 * 115.56719 * 34.41694 * 9 7 6 11 11 C 1.53185 * 117.52146 * 248.64355 * 9 7 6 12 12 C 1.52114 * 117.52241 * 180.19316 * 9 7 6 13 13 C 1.53709 * 121.75117 * 218.50762 * 12 9 7 14 14 C 1.54699 * 103.69618 * 143.51439 * 13 12 9 15 15 O 1.44498 * 104.86854 * 23.83605 * 14 13 12 16 16 C 1.44640 * 105.46081 * 320.02305 * 15 14 13 17 17 C 1.46903 * 110.99937 * 123.95669 * 2 1 3 18 18 C 1.50694 * 109.47066 * 66.04365 * 17 2 1 19 19 O 1.21297 * 120.00199 * 359.97438 * 18 17 2 20 20 N 1.34784 * 119.99988 * 180.02562 * 18 17 2 21 21 C 1.37096 * 119.99735 * 179.72439 * 20 18 17 22 22 H 1.07998 * 120.00618 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99464 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99620 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00237 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99788 * 25 23 21 27 27 H 1.48497 * 109.46972 * 209.99368 * 25 23 21 28 28 H 1.48494 * 109.47103 * 329.99983 * 25 23 21 29 29 H 1.09007 * 109.46841 * 296.04736 * 1 2 3 30 30 H 1.08999 * 109.47173 * 56.03978 * 1 2 3 31 31 H 1.08997 * 109.47372 * 176.04875 * 1 2 3 32 32 H 1.09003 * 109.47192 * 53.95804 * 3 2 1 33 33 H 1.08996 * 109.47188 * 173.95051 * 3 2 1 34 34 H 1.08997 * 109.47228 * 299.99835 * 4 3 2 35 35 H 1.09004 * 109.47108 * 59.99878 * 4 3 2 36 36 H 1.08997 * 109.47315 * 300.00308 * 5 4 3 37 37 H 1.09004 * 109.46749 * 60.00185 * 5 4 3 38 38 H 0.97000 * 120.00435 * 0.02562 * 6 5 4 39 39 H 1.09002 * 117.52574 * 359.97438 * 11 9 7 40 40 H 1.09001 * 117.52721 * 145.15287 * 11 9 7 41 41 H 1.08992 * 110.57992 * 262.07136 * 13 12 9 42 42 H 1.09006 * 110.58029 * 24.81386 * 13 12 9 43 43 H 1.08991 * 110.35680 * 142.68279 * 14 13 12 44 44 H 1.08998 * 110.36092 * 264.98555 * 14 13 12 45 45 H 1.09007 * 110.42171 * 280.89062 * 16 15 14 46 46 H 1.09003 * 110.41793 * 158.42802 * 16 15 14 47 47 H 1.08998 * 109.46809 * 306.04466 * 17 2 1 48 48 H 1.09002 * 109.47056 * 186.04207 * 17 2 1 49 49 H 0.97000 * 119.99339 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99478 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0575 -1.3182 5 6 2.1794 3.4860 -1.3179 6 7 1.8314 4.1427 -2.5804 7 6 2.2131 5.4155 -2.8055 8 8 2.8450 6.0172 -1.9631 9 6 1.8546 6.0912 -4.1039 10 1 0.8920 5.8096 -4.5307 11 6 2.9954 6.4055 -5.0768 12 6 2.3177 7.5267 -4.3005 13 6 1.4344 8.5732 -4.9987 14 6 1.7282 9.8779 -4.2212 15 8 3.0347 9.6758 -3.6379 16 6 3.0491 8.2999 -3.1919 17 6 1.9954 -0.7661 1.1376 18 6 1.6369 -2.2204 0.9728 19 8 1.0045 -2.5831 0.0033 20 7 2.0179 -3.1181 1.9032 21 6 1.6868 -4.4403 1.7561 22 1 1.1210 -4.7627 0.8945 23 6 2.0802 -5.3658 2.7151 24 7 1.7624 -6.6331 2.5743 25 14 3.0594 -4.8082 4.2049 26 1 2.1270 -4.4406 5.3007 27 1 3.9440 -5.9119 4.6571 28 1 3.8854 -3.6290 3.8413 29 1 -0.3633 0.4513 0.9234 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 1.5612 1.9273 0.8310 33 1 3.0797 1.3443 0.1083 34 1 2.0659 1.5016 -2.1491 35 1 0.5472 2.0845 -1.4265 36 1 1.7448 4.0417 -0.4870 37 1 3.2637 3.4592 -1.2095 38 1 1.3263 3.6615 -3.2544 39 1 4.0049 6.1238 -4.7773 40 1 2.7827 6.3315 -6.1433 41 1 1.7195 8.6783 -6.0454 42 1 0.3816 8.3033 -4.9148 43 1 1.7443 10.7292 -4.9016 44 1 0.9834 10.0298 -3.4400 45 1 2.5176 8.2013 -2.2453 46 1 4.0743 7.9431 -3.0924 47 1 1.5611 -0.3873 2.0627 48 1 3.0797 -0.6612 1.1756 49 1 2.5226 -2.8278 2.6790 50 1 2.0366 -7.2791 3.2440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479806638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:46 Heat of formation + Delta-G solvation = -107.714252 kcal Electronic energy + Delta-G solvation = -28364.466137 eV Core-core repulsion = 24198.718606 eV Total energy + Delta-G solvation = -4165.747532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56930 -40.51083 -39.91298 -38.33309 -36.90847 -36.19105 -35.79928 -33.74624 -32.66533 -31.28991 -29.54455 -28.49678 -27.63898 -26.59453 -25.11864 -23.66501 -23.42622 -22.09213 -21.30502 -21.23651 -20.37861 -20.14124 -18.20395 -17.85466 -17.31933 -17.02000 -16.95564 -16.80145 -16.57868 -16.33250 -16.10577 -15.97914 -15.59537 -15.28319 -15.11443 -14.84595 -14.73134 -14.35812 -14.28086 -14.03989 -13.69205 -13.41034 -13.33598 -13.14097 -13.06894 -12.81237 -12.71195 -12.52954 -12.38906 -12.37794 -12.31499 -11.99696 -11.97736 -11.63544 -11.51313 -11.45881 -11.06980 -10.87388 -10.53493 -10.35365 -10.22119 -10.09554 -9.19531 -8.40503 -6.00920 1.30832 1.35585 1.43238 1.44687 1.97398 2.03948 2.23458 2.63147 2.70082 3.07314 3.15974 3.26763 3.32911 3.66805 3.73910 3.88742 3.96114 3.97137 4.06085 4.13296 4.23752 4.24638 4.39833 4.43450 4.45614 4.52418 4.54185 4.60950 4.64464 4.69755 4.74783 4.78689 4.80034 4.84413 4.88930 4.93204 5.06771 5.08651 5.10553 5.20456 5.30299 5.44608 5.54159 5.82232 5.91138 6.02551 6.22041 6.53409 6.61222 6.89963 7.22064 7.41483 7.99010 8.77147 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036216 B = 0.001420 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.953221 B =19713.154643 C =20084.916107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.058 3.942 4 C -0.115 4.115 5 C 0.128 3.872 6 N -0.714 5.714 7 C 0.534 3.466 8 O -0.578 6.578 9 C -0.169 4.169 10 H 0.158 0.842 11 C -0.121 4.121 12 C -0.144 4.144 13 C -0.112 4.112 14 C 0.036 3.964 15 O -0.406 6.406 16 C 0.093 3.907 17 C 0.053 3.947 18 C 0.451 3.549 19 O -0.605 6.605 20 N -0.593 5.593 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.029 0.971 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.416 0.584 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.119 0.881 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 32.945 -12.364 35.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.069 4.069 4 C -0.153 4.153 5 C 0.004 3.996 6 N -0.365 5.365 7 C 0.321 3.679 8 O -0.458 6.458 9 C -0.189 4.189 10 H 0.175 0.825 11 C -0.158 4.158 12 C -0.145 4.145 13 C -0.149 4.149 14 C -0.040 4.040 15 O -0.325 6.325 16 C 0.016 3.984 17 C -0.078 4.078 18 C 0.239 3.761 19 O -0.489 6.489 20 N -0.235 5.235 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.783 3.217 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.155 1.155 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.111 0.889 40 H 0.154 0.846 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.137 0.863 49 H 0.224 0.776 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.817 32.829 -12.746 35.226 hybrid contribution -0.260 -0.755 1.511 1.709 sum 0.556 32.074 -11.235 33.989 Atomic orbital electron populations 1.22480 0.86958 1.02323 1.00726 1.61482 1.08852 1.13766 1.42427 1.22083 1.00987 0.86614 0.97265 1.21639 1.02098 0.93199 0.98387 1.21187 1.00162 0.92352 0.85926 1.45868 1.57295 1.13221 1.20157 1.20148 0.78200 0.81617 0.87889 1.90696 1.41807 1.65246 1.48092 1.22312 1.03080 0.97683 0.95860 0.82490 1.23119 0.95851 0.98378 0.98422 1.22216 1.02078 0.89775 1.00404 1.22451 1.00165 0.91980 1.00311 1.23660 0.84438 0.99028 0.96904 1.89144 1.34779 1.29070 1.79532 1.22682 1.00434 0.79969 0.95275 1.21844 1.02762 0.89305 0.93865 1.20916 0.82906 0.88866 0.83424 1.90510 1.44128 1.81465 1.32786 1.42053 1.51771 1.06877 1.22835 1.19004 1.34476 0.83265 1.08888 0.92605 1.26086 0.98679 0.94642 1.01865 1.69806 1.47315 1.03052 1.37413 0.85384 0.78909 0.79661 0.77702 1.18238 1.20101 1.15464 0.95203 0.89708 0.93044 0.93439 0.89569 0.90546 0.90424 0.91937 0.92003 0.74700 0.88909 0.84567 0.88438 0.88252 0.87350 0.92011 0.92411 0.90381 0.90496 0.86329 0.77575 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.01 127.69 1.15 1.81 16 2 N -0.54 -15.24 4.50 -927.06 -4.17 -19.41 16 3 C 0.06 1.10 4.96 86.30 0.43 1.53 16 4 C -0.12 -1.75 5.26 30.59 0.16 -1.59 16 5 C 0.13 1.90 5.67 86.38 0.49 2.39 16 6 N -0.71 -9.10 5.56 -463.07 -2.57 -11.67 16 7 C 0.53 8.83 7.61 87.66 0.67 9.50 16 8 O -0.58 -14.27 13.83 -3.06 -0.04 -14.31 16 9 C -0.17 -1.71 6.08 -11.77 -0.07 -1.78 16 10 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 11 C -0.12 -1.11 10.01 30.42 0.30 -0.81 16 12 C -0.14 -1.80 2.51 -52.24 -0.13 -1.93 16 13 C -0.11 -0.89 6.88 31.41 0.22 -0.67 16 14 C 0.04 0.42 7.65 72.56 0.56 0.98 16 15 O -0.41 -8.23 11.65 -148.98 -1.74 -9.96 16 16 C 0.09 1.81 5.65 72.21 0.41 2.22 16 17 C 0.05 1.60 5.45 85.55 0.47 2.07 16 18 C 0.45 20.13 7.51 87.65 0.66 20.79 16 19 O -0.60 -32.92 13.88 -3.08 -0.04 -32.96 16 20 N -0.59 -27.80 5.09 -306.97 -1.56 -29.37 16 21 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.94 -56.30 13.96 21.67 0.30 -55.99 16 25 Si 0.96 38.65 27.73 68.60 1.90 40.56 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 29 H 0.03 0.74 8.14 -2.38 -0.02 0.73 16 30 H 0.08 1.96 6.30 -2.39 -0.02 1.94 16 31 H 0.05 1.96 5.88 -2.39 -0.01 1.94 16 32 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.09 1.48 7.93 -2.39 -0.02 1.46 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.10 6.47 -2.39 -0.02 1.09 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.42 3.08 8.47 -92.71 -0.79 2.30 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 1.32 7.04 -2.38 -0.02 1.31 16 46 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 47 H 0.08 1.93 8.12 -2.39 -0.02 1.92 16 48 H 0.12 2.92 7.93 -2.39 -0.02 2.90 16 49 H 0.39 15.07 5.77 -92.71 -0.53 14.54 16 50 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -83.14 402.19 -1.72 -84.86 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.42 Total: 32.31 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.62 Total: 15.95 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -8.00 Total: -116.44 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -1.82 Total: -57.24 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.56 kcal Total: -83.14 -1.72 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479806638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.853 kcal (2) G-P(sol) polarization free energy of solvation -83.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds