Wall clock time and date at job start Sat Apr 11 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34782 * 120.00084 * 2 1 4 4 O 1.21277 * 120.00208 * 185.15232 * 3 2 1 5 5 C 1.50698 * 119.99815 * 5.14377 * 3 2 1 6 6 H 1.09008 * 110.74913 * 33.15156 * 5 3 2 7 7 C 1.55305 * 110.84653 * 156.83675 * 5 3 2 8 8 C 1.54951 * 100.94019 * 152.32680 * 7 5 3 9 9 O 1.43646 * 105.13634 * 323.55881 * 8 7 5 10 10 C 1.43239 * 109.97146 * 24.43078 * 9 8 7 11 11 C 1.46508 * 120.00581 * 180.02562 * 2 1 3 12 12 C 1.53120 * 109.51970 * 300.00180 * 11 2 1 13 13 C 1.53031 * 109.27770 * 177.55660 * 12 11 2 14 14 N 1.46849 * 109.52218 * 300.81721 * 13 12 11 15 15 C 1.46903 * 110.99941 * 185.83646 * 14 13 12 16 16 C 1.50702 * 109.47161 * 169.63664 * 15 14 13 17 17 O 1.21291 * 119.99599 * 353.83785 * 16 15 14 18 18 N 1.34776 * 120.00202 * 173.84185 * 16 15 14 19 19 C 1.37091 * 120.00035 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00145 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99757 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00238 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47122 * 89.99667 * 23 21 19 25 25 H 1.48490 * 109.47286 * 209.99712 * 23 21 19 26 26 H 1.48498 * 109.47167 * 330.00120 * 23 21 19 27 27 C 1.46848 * 111.19634 * 61.74704 * 14 13 12 28 28 C 1.53037 * 109.51977 * 298.25246 * 27 14 13 29 29 H 1.09004 * 109.46842 * 267.22596 * 1 2 3 30 30 H 1.08995 * 109.47375 * 27.22682 * 1 2 3 31 31 H 1.09001 * 109.47118 * 147.22892 * 1 2 3 32 32 H 1.09000 * 111.13092 * 270.24593 * 7 5 3 33 33 H 1.09002 * 111.12409 * 34.41263 * 7 5 3 34 34 H 1.09000 * 110.31024 * 204.64037 * 8 7 5 35 35 H 1.09002 * 110.30487 * 82.47300 * 8 7 5 36 36 H 1.09003 * 109.82299 * 238.77301 * 10 9 8 37 37 H 1.08996 * 109.83483 * 117.80514 * 10 9 8 38 38 H 1.08994 * 109.57546 * 179.83603 * 11 2 1 39 39 H 1.09001 * 109.50236 * 297.49547 * 12 11 2 40 40 H 1.08998 * 109.50389 * 57.61030 * 12 11 2 41 41 H 1.09003 * 109.46210 * 60.83439 * 13 12 11 42 42 H 1.08996 * 109.46659 * 180.80175 * 13 12 11 43 43 H 1.09002 * 109.47510 * 289.64100 * 15 14 13 44 44 H 1.09009 * 109.46730 * 49.63575 * 15 14 13 45 45 H 0.97002 * 119.99931 * 0.02562 * 18 16 15 46 46 H 0.97006 * 119.99926 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.46243 * 178.24439 * 27 14 13 48 48 H 1.09001 * 109.45934 * 58.26664 * 27 14 13 49 49 H 1.09000 * 109.50661 * 299.24545 * 28 27 14 50 50 H 1.09002 * 109.50392 * 179.12495 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3480 1.1694 -0.0943 5 6 1.3899 2.4697 0.1170 6 1 0.5036 2.3509 0.7405 7 6 2.3128 3.5903 0.6687 8 6 1.6559 4.8467 0.0434 9 8 1.2163 4.4310 -1.2594 10 6 1.0118 3.0134 -1.2775 11 6 2.1976 -1.2687 -0.0006 12 6 1.8286 -2.0732 1.2489 13 6 2.5496 -3.4225 1.2123 14 7 2.1570 -4.1561 0.0023 15 6 2.7219 -5.5121 0.0022 16 6 2.1002 -6.3152 -1.1112 17 8 1.1902 -5.8466 -1.7619 18 7 2.5554 -7.5542 -1.3839 19 6 1.9895 -8.2849 -2.3964 20 1 1.1787 -7.8680 -2.9753 21 6 2.4584 -9.5624 -2.6770 22 7 3.4447 -10.0700 -1.9723 23 14 1.6869 -10.5585 -4.0562 24 1 2.4056 -10.2847 -5.3266 25 1 1.7825 -12.0052 -3.7354 26 1 0.2592 -10.1773 -4.2033 27 6 2.5439 -3.4248 -1.2110 28 6 1.8225 -2.0756 -1.2467 29 1 -0.3633 -0.0497 1.0265 30 1 -0.3634 0.9137 -0.4701 31 1 -0.3633 -0.8641 -0.5563 32 1 2.2766 3.6287 1.7574 33 1 3.3365 3.4654 0.3157 34 1 2.3855 5.6520 -0.0425 35 1 0.8057 5.1681 0.6450 36 1 1.6475 2.5579 -2.0368 37 1 -0.0345 2.7933 -1.4890 38 1 3.2695 -1.0714 -0.0034 39 1 2.1321 -1.5224 2.1392 40 1 0.7512 -2.2368 1.2713 41 1 3.6272 -3.2583 1.2038 42 1 2.2779 -4.0036 2.0935 43 1 3.8001 -5.4566 -0.1481 44 1 2.5126 -5.9930 0.9578 45 1 3.2829 -7.9291 -0.8632 46 1 3.7718 -10.9620 -2.1681 47 1 2.2678 -4.0075 -2.0898 48 1 3.6214 -3.2606 -1.2079 49 1 0.7450 -2.2393 -1.2635 50 1 2.1218 -1.5265 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479882966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:55 Heat of formation + Delta-G solvation = -106.741740 kcal Electronic energy + Delta-G solvation = -30096.755413 eV Core-core repulsion = 25931.050053 eV Total energy + Delta-G solvation = -4165.705360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96223 -39.50777 -38.63834 -37.55599 -35.73431 -33.91478 -33.05780 -31.90721 -31.18685 -30.77478 -29.78205 -27.61072 -26.92923 -24.84625 -23.78577 -23.12106 -22.91239 -21.97232 -19.75293 -19.26595 -19.17529 -17.89987 -17.85408 -16.94983 -16.68032 -16.12083 -15.84280 -15.54362 -15.20452 -14.96561 -14.88393 -14.56330 -13.97458 -13.89425 -13.83873 -13.77802 -13.50551 -13.39020 -13.20367 -13.11415 -12.70024 -12.46378 -12.28659 -11.95451 -11.89858 -11.73059 -11.60850 -11.47664 -11.36782 -11.19900 -11.11083 -11.03896 -10.60867 -10.49398 -10.39478 -10.22085 -10.12479 -9.88106 -9.47822 -8.86445 -8.44465 -7.97640 -7.86917 -6.41739 -3.82491 2.22334 2.62904 3.17448 3.26191 3.31856 3.39779 3.89281 3.90986 3.96416 4.13884 4.23582 4.42454 4.57995 4.65574 4.71804 4.75634 4.79225 4.84358 5.03580 5.05226 5.14583 5.20441 5.24608 5.25693 5.28493 5.30774 5.36536 5.40458 5.44167 5.55078 5.62828 5.66400 5.70525 5.79828 5.82001 5.94933 6.00075 6.08334 6.21367 6.30210 6.36665 6.43853 6.48362 7.08020 7.27424 7.39153 7.55011 7.84957 8.06456 8.62010 9.18207 9.54852 10.06617 10.75987 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028534 B = 0.001938 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.048267 B =14445.055933 C =14895.425683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.525 3.475 4 O -0.535 6.535 5 C -0.148 4.148 6 H 0.107 0.893 7 C -0.140 4.140 8 C 0.052 3.948 9 O -0.380 6.380 10 C 0.069 3.931 11 C 0.137 3.863 12 C -0.119 4.119 13 C 0.058 3.942 14 N -0.515 5.515 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.058 3.942 28 C -0.119 4.119 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.102 0.898 48 H 0.025 0.975 49 H 0.078 0.922 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 24.255 9.035 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.339 5.339 3 C 0.312 3.688 4 O -0.412 6.412 5 C -0.169 4.169 6 H 0.125 0.875 7 C -0.178 4.178 8 C -0.025 4.025 9 O -0.299 6.299 10 C -0.008 4.008 11 C 0.034 3.966 12 C -0.158 4.158 13 C -0.071 4.071 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.070 4.070 28 C -0.157 4.157 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.043 0.957 49 H 0.096 0.904 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.939 24.467 8.353 26.152 hybrid contribution 0.897 -1.057 -0.005 1.386 sum -3.043 23.410 8.347 25.039 Atomic orbital electron populations 1.21888 0.79404 1.03661 1.02305 1.47944 1.07194 1.05834 1.72909 1.20196 0.87750 0.84796 0.76070 1.90699 1.14145 1.86976 1.49363 1.22948 1.00401 0.94083 0.99497 0.87491 1.23255 1.00801 0.92134 1.01641 1.23424 0.98241 0.97014 0.83795 1.88428 1.88408 1.21379 1.31684 1.23004 1.01265 0.81599 0.94975 1.21290 0.97629 0.81824 0.95847 1.21881 1.02058 0.94969 0.96898 1.22046 0.97140 0.94107 0.93820 1.61531 1.59785 1.01196 1.01459 1.21848 0.96856 0.89719 1.00080 1.19745 0.86830 0.83279 0.87275 1.90497 1.31770 1.70720 1.53114 1.41884 1.33334 1.13163 1.31802 1.19685 1.16627 0.96405 1.10058 0.87929 1.25260 0.96568 0.97289 0.98874 1.69613 1.26501 1.17732 1.40481 0.85864 0.79542 0.78427 0.80488 1.20447 1.20948 1.19429 1.22134 0.96060 0.93899 0.94891 1.21888 1.02272 0.95039 0.96538 0.92245 0.91145 0.89833 0.89455 0.88460 0.89242 0.91870 0.90687 0.90473 0.88464 0.91592 0.90515 0.95014 0.90365 0.93531 0.89252 0.77511 0.91896 0.87978 0.95680 0.90372 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 8.91 59.84 0.53 1.02 16 2 N -0.61 -6.02 2.77 -173.79 -0.48 -6.50 16 3 C 0.52 5.71 6.72 -10.98 -0.07 5.63 16 4 O -0.54 -7.87 15.14 5.56 0.08 -7.78 16 5 C -0.15 -1.14 2.36 -89.83 -0.21 -1.35 16 6 H 0.11 0.58 7.09 -51.92 -0.37 0.22 16 7 C -0.14 -1.04 6.48 -24.48 -0.16 -1.20 16 8 C 0.05 0.35 7.78 38.19 0.30 0.65 16 9 O -0.38 -3.65 11.36 -35.23 -0.40 -4.05 16 10 C 0.07 0.56 7.00 37.88 0.27 0.83 16 11 C 0.14 1.61 2.59 -67.80 -0.18 1.43 16 12 C -0.12 -1.30 5.41 -26.65 -0.14 -1.45 16 13 C 0.06 0.72 5.46 -3.84 -0.02 0.70 16 14 N -0.51 -8.29 4.35 -236.11 -1.03 -9.32 16 15 C 0.05 0.81 5.45 -4.97 -0.03 0.79 16 16 C 0.44 10.28 7.31 -10.98 -0.08 10.20 16 17 O -0.58 -15.19 14.26 5.55 0.08 -15.11 16 18 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 19 C -0.30 -8.23 9.68 -14.94 -0.14 -8.38 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.06 0.93 5.12 -3.83 -0.02 0.91 16 28 C -0.12 -1.57 5.39 -26.65 -0.14 -1.71 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.35 5.75 -51.93 -0.30 0.06 16 31 H 0.08 0.63 6.38 -51.93 -0.33 0.30 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.92 7.20 -51.93 -0.37 0.55 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.71 7.81 -51.93 -0.41 0.30 16 37 H 0.08 0.48 7.54 -51.93 -0.39 0.09 16 38 H 0.10 1.33 6.92 -51.93 -0.36 0.98 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.84 7.60 -51.93 -0.39 0.44 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 43 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.09 1.41 7.98 -51.92 -0.41 1.00 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.10 1.99 6.03 -51.93 -0.31 1.68 16 48 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 1.05 6.58 -51.93 -0.34 0.71 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -33.18 389.74 -8.47 -41.65 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.04 Total: 8.70 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.20 Total: 8.55 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.84 Total: -53.77 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.24 Total: -26.94 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.18 -8.47 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479882966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.092 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds