Wall clock time and date at job start Sat Apr 11 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34782 * 120.00084 * 2 1 4 4 O 1.21277 * 120.00208 * 185.15232 * 3 2 1 5 5 C 1.50698 * 119.99815 * 5.14377 * 3 2 1 6 6 H 1.09008 * 110.74913 * 33.15156 * 5 3 2 7 7 C 1.55305 * 110.84653 * 156.83675 * 5 3 2 8 8 C 1.54951 * 100.94019 * 152.32680 * 7 5 3 9 9 O 1.43646 * 105.13634 * 323.55881 * 8 7 5 10 10 C 1.43239 * 109.97146 * 24.43078 * 9 8 7 11 11 C 1.46508 * 120.00581 * 180.02562 * 2 1 3 12 12 C 1.53120 * 109.51970 * 300.00180 * 11 2 1 13 13 C 1.53031 * 109.27770 * 177.55660 * 12 11 2 14 14 N 1.46849 * 109.52218 * 300.81721 * 13 12 11 15 15 C 1.46903 * 110.99941 * 185.83646 * 14 13 12 16 16 C 1.50702 * 109.47161 * 169.63664 * 15 14 13 17 17 O 1.21291 * 119.99599 * 353.83785 * 16 15 14 18 18 N 1.34776 * 120.00202 * 173.84185 * 16 15 14 19 19 C 1.37091 * 120.00035 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00145 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99757 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00238 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47122 * 89.99667 * 23 21 19 25 25 H 1.48490 * 109.47286 * 209.99712 * 23 21 19 26 26 H 1.48498 * 109.47167 * 330.00120 * 23 21 19 27 27 C 1.46848 * 111.19634 * 61.74704 * 14 13 12 28 28 C 1.53037 * 109.51977 * 298.25246 * 27 14 13 29 29 H 1.09004 * 109.46842 * 267.22596 * 1 2 3 30 30 H 1.08995 * 109.47375 * 27.22682 * 1 2 3 31 31 H 1.09001 * 109.47118 * 147.22892 * 1 2 3 32 32 H 1.09000 * 111.13092 * 270.24593 * 7 5 3 33 33 H 1.09002 * 111.12409 * 34.41263 * 7 5 3 34 34 H 1.09000 * 110.31024 * 204.64037 * 8 7 5 35 35 H 1.09002 * 110.30487 * 82.47300 * 8 7 5 36 36 H 1.09003 * 109.82299 * 238.77301 * 10 9 8 37 37 H 1.08996 * 109.83483 * 117.80514 * 10 9 8 38 38 H 1.08994 * 109.57546 * 179.83603 * 11 2 1 39 39 H 1.09001 * 109.50236 * 297.49547 * 12 11 2 40 40 H 1.08998 * 109.50389 * 57.61030 * 12 11 2 41 41 H 1.09003 * 109.46210 * 60.83439 * 13 12 11 42 42 H 1.08996 * 109.46659 * 180.80175 * 13 12 11 43 43 H 1.09002 * 109.47510 * 289.64100 * 15 14 13 44 44 H 1.09009 * 109.46730 * 49.63575 * 15 14 13 45 45 H 0.97002 * 119.99931 * 0.02562 * 18 16 15 46 46 H 0.97006 * 119.99926 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.46243 * 178.24439 * 27 14 13 48 48 H 1.09001 * 109.45934 * 58.26664 * 27 14 13 49 49 H 1.09000 * 109.50661 * 299.24545 * 28 27 14 50 50 H 1.09002 * 109.50392 * 179.12495 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3480 1.1694 -0.0943 5 6 1.3899 2.4697 0.1170 6 1 0.5036 2.3509 0.7405 7 6 2.3128 3.5903 0.6687 8 6 1.6559 4.8467 0.0434 9 8 1.2163 4.4310 -1.2594 10 6 1.0118 3.0134 -1.2775 11 6 2.1976 -1.2687 -0.0006 12 6 1.8286 -2.0732 1.2489 13 6 2.5496 -3.4225 1.2123 14 7 2.1570 -4.1561 0.0023 15 6 2.7219 -5.5121 0.0022 16 6 2.1002 -6.3152 -1.1112 17 8 1.1902 -5.8466 -1.7619 18 7 2.5554 -7.5542 -1.3839 19 6 1.9895 -8.2849 -2.3964 20 1 1.1787 -7.8680 -2.9753 21 6 2.4584 -9.5624 -2.6770 22 7 3.4447 -10.0700 -1.9723 23 14 1.6869 -10.5585 -4.0562 24 1 2.4056 -10.2847 -5.3266 25 1 1.7825 -12.0052 -3.7354 26 1 0.2592 -10.1773 -4.2033 27 6 2.5439 -3.4248 -1.2110 28 6 1.8225 -2.0756 -1.2467 29 1 -0.3633 -0.0497 1.0265 30 1 -0.3634 0.9137 -0.4701 31 1 -0.3633 -0.8641 -0.5563 32 1 2.2766 3.6287 1.7574 33 1 3.3365 3.4654 0.3157 34 1 2.3855 5.6520 -0.0425 35 1 0.8057 5.1681 0.6450 36 1 1.6475 2.5579 -2.0368 37 1 -0.0345 2.7933 -1.4890 38 1 3.2695 -1.0714 -0.0034 39 1 2.1321 -1.5224 2.1392 40 1 0.7512 -2.2368 1.2713 41 1 3.6272 -3.2583 1.2038 42 1 2.2779 -4.0036 2.0935 43 1 3.8001 -5.4566 -0.1481 44 1 2.5126 -5.9930 0.9578 45 1 3.2829 -7.9291 -0.8632 46 1 3.7718 -10.9620 -2.1681 47 1 2.2678 -4.0075 -2.0898 48 1 3.6214 -3.2606 -1.2079 49 1 0.7450 -2.2393 -1.2635 50 1 2.1218 -1.5265 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479882966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:54 Heat of formation + Delta-G solvation = -131.428968 kcal Electronic energy + Delta-G solvation = -30097.825932 eV Core-core repulsion = 25931.050053 eV Total energy + Delta-G solvation = -4166.775879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76369 -40.65810 -39.80731 -38.88965 -36.77914 -35.86811 -33.95231 -33.27039 -32.71641 -31.86841 -30.41194 -28.83243 -27.84436 -26.47577 -24.88860 -24.21872 -23.60982 -22.84333 -21.02718 -20.70365 -20.07364 -19.86677 -18.61382 -17.83369 -17.65785 -17.35628 -16.90754 -16.60240 -16.41469 -16.24529 -16.06354 -15.66988 -15.48824 -15.36821 -15.05937 -14.53418 -14.49753 -14.44383 -14.25093 -13.99898 -13.80747 -13.50544 -13.36364 -13.20440 -13.02016 -12.93339 -12.74007 -12.51241 -12.42166 -12.33946 -12.30463 -12.18850 -12.11415 -11.91307 -11.72024 -11.57283 -11.41474 -10.95301 -10.53451 -10.27542 -9.99162 -9.69421 -9.23192 -8.45675 -5.94025 1.37918 1.41097 1.41576 1.54245 1.84614 2.07084 2.28522 2.73910 2.82423 3.21302 3.26668 3.37814 3.49918 3.75689 3.80629 3.87160 3.98965 4.07173 4.11513 4.17152 4.21097 4.27106 4.29691 4.35150 4.45433 4.46147 4.55035 4.59993 4.62678 4.67906 4.69274 4.72751 4.82091 4.85933 4.88710 4.93961 4.94713 5.03962 5.11489 5.12296 5.29296 5.41719 5.48238 5.87812 5.91786 6.07010 6.20697 6.31964 6.61961 7.03749 7.14242 7.58236 8.13918 8.71747 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028534 B = 0.001938 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.048267 B =14445.055933 C =14895.425683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.604 5.604 3 C 0.521 3.479 4 O -0.582 6.582 5 C -0.139 4.139 6 H 0.141 0.859 7 C -0.140 4.140 8 C 0.050 3.950 9 O -0.404 6.404 10 C 0.068 3.932 11 C 0.143 3.857 12 C -0.109 4.109 13 C 0.056 3.944 14 N -0.527 5.527 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.062 3.938 28 C -0.108 4.108 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.076 0.924 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 25.295 10.756 27.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.335 5.335 3 C 0.310 3.690 4 O -0.462 6.462 5 C -0.160 4.160 6 H 0.159 0.841 7 C -0.178 4.178 8 C -0.026 4.026 9 O -0.324 6.324 10 C -0.009 4.009 11 C 0.040 3.960 12 C -0.148 4.148 13 C -0.071 4.071 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.498 6.498 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.067 4.067 28 C -0.147 4.147 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.133 0.867 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.045 0.955 49 H 0.095 0.905 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.216 25.518 10.099 27.935 hybrid contribution 1.298 -1.322 -0.541 1.930 sum -3.918 24.195 9.558 26.308 Atomic orbital electron populations 1.22139 0.77200 1.04567 1.03889 1.47991 1.08467 1.04868 1.72138 1.20769 0.87365 0.85875 0.75029 1.90682 1.16337 1.87653 1.51500 1.22982 1.01136 0.92028 0.99845 0.84134 1.23243 0.99266 0.92451 1.02861 1.23600 0.99282 0.96737 0.82943 1.88401 1.88642 1.21933 1.33411 1.23041 1.02153 0.81084 0.94623 1.21039 0.96800 0.82716 0.95489 1.21815 1.02156 0.93925 0.96880 1.22180 0.97736 0.94735 0.92490 1.61521 1.60215 1.00831 1.02693 1.21739 0.97119 0.90043 0.98524 1.20753 0.85921 0.82747 0.87645 1.90471 1.33352 1.71336 1.54600 1.41956 1.33725 1.13909 1.31790 1.19644 1.17198 0.97614 1.11503 0.90267 1.26032 0.96829 0.97684 1.00886 1.69676 1.27003 1.18201 1.41382 0.84937 0.78417 0.77311 0.77728 1.19817 1.19591 1.19697 1.21984 0.96417 0.94611 0.93664 1.21755 1.01689 0.93756 0.97485 0.90066 0.88891 0.90568 0.87417 0.91293 0.88695 0.89408 0.92995 0.88039 0.90564 0.89730 0.89949 0.94530 0.88575 0.92029 0.86741 0.77113 0.91388 0.92101 0.95546 0.90501 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 8.91 127.77 1.14 1.83 16 2 N -0.60 -10.99 2.77 -822.14 -2.28 -13.26 16 3 C 0.52 10.79 6.72 87.66 0.59 11.38 16 4 O -0.58 -17.38 15.14 -3.02 -0.05 -17.43 16 5 C -0.14 -1.83 2.36 -10.28 -0.02 -1.85 16 6 H 0.14 0.92 7.09 -2.38 -0.02 0.90 16 7 C -0.14 -1.86 6.48 32.05 0.21 -1.65 16 8 C 0.05 0.58 7.78 72.65 0.57 1.14 16 9 O -0.40 -7.21 11.36 -148.98 -1.69 -8.90 16 10 C 0.07 1.01 7.00 72.45 0.51 1.52 16 11 C 0.14 3.24 2.59 45.07 0.12 3.36 16 12 C -0.11 -2.13 5.41 30.64 0.17 -1.96 16 13 C 0.06 1.29 5.46 86.32 0.47 1.76 16 14 N -0.53 -16.60 4.35 -900.90 -3.92 -20.52 16 15 C 0.06 1.96 5.45 85.56 0.47 2.42 16 16 C 0.44 20.90 7.31 87.66 0.64 21.55 16 17 O -0.61 -33.30 14.26 -3.06 -0.04 -33.35 16 18 N -0.58 -29.57 5.29 -306.99 -1.62 -31.19 16 19 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 22 N -0.92 -49.93 13.05 21.66 0.28 -49.64 16 23 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C 0.06 2.03 5.12 86.33 0.44 2.47 16 28 C -0.11 -2.88 5.39 30.65 0.17 -2.71 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.60 5.75 -2.39 -0.01 0.59 16 31 H 0.08 0.99 6.38 -2.39 -0.02 0.98 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.32 7.20 -2.39 -0.02 1.31 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.99 7.81 -2.39 -0.02 0.97 16 37 H 0.10 0.98 7.54 -2.39 -0.02 0.96 16 38 H 0.08 2.10 6.92 -2.39 -0.02 2.08 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.55 7.60 -2.39 -0.02 1.53 16 41 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 1.89 8.01 -2.39 -0.02 1.87 16 43 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 44 H 0.11 3.39 7.98 -2.38 -0.02 3.37 16 45 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 46 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 47 H 0.06 2.50 6.03 -2.39 -0.01 2.49 16 48 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 2.06 6.58 -2.39 -0.02 2.05 16 50 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -74.85 389.74 -0.34 -75.19 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.22 Total: 32.99 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.73 Total: 21.01 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -7.54 Total: -114.62 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -1.78 Total: -59.68 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.85 -0.34 -75.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479882966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.239 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds