Wall clock time and date at job start Sat Apr 11 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00075 * 2 1 4 4 C 1.52995 * 109.47556 * 180.02562 * 3 2 1 5 5 C 1.52990 * 109.47669 * 184.21164 * 4 3 2 6 6 C 1.50706 * 115.56118 * 320.42564 * 5 4 3 7 7 O 1.21285 * 119.99954 * 99.79603 * 6 5 4 8 8 N 1.34778 * 119.99879 * 279.80258 * 6 5 4 9 9 C 1.46503 * 119.99905 * 185.59088 * 8 6 5 10 10 H 1.09007 * 110.27024 * 325.69506 * 9 8 6 11 11 C 1.54589 * 110.31002 * 87.78550 * 9 8 6 12 12 C 1.55197 * 102.80143 * 96.98089 * 11 9 8 13 13 N 1.48528 * 103.23490 * 37.43393 * 12 11 9 14 14 C 1.46897 * 110.99760 * 200.25346 * 13 12 11 15 15 C 1.50700 * 109.47660 * 287.39902 * 14 13 12 16 16 O 1.21294 * 119.99361 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00242 * 180.02562 * 15 14 13 18 18 C 1.37106 * 119.99837 * 180.02562 * 17 15 14 19 19 H 1.07992 * 120.00092 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99869 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99770 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00013 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47169 * 90.00038 * 22 20 18 24 24 H 1.48506 * 109.47339 * 209.99755 * 22 20 18 25 25 H 1.48493 * 109.47333 * 330.00209 * 22 20 18 26 26 C 1.47900 * 105.82089 * 320.77047 * 13 12 11 27 27 C 1.52996 * 117.50380 * 174.73701 * 5 4 3 28 28 C 1.52991 * 60.03410 * 252.51791 * 27 5 4 29 29 H 1.09005 * 109.46742 * 60.00227 * 1 2 3 30 30 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47107 * 300.00238 * 1 2 3 32 32 H 1.09001 * 109.46735 * 59.99696 * 3 2 1 33 33 H 1.08997 * 109.47240 * 300.00329 * 3 2 1 34 34 H 1.09003 * 109.47022 * 64.20233 * 4 3 2 35 35 H 1.09006 * 109.46601 * 304.21293 * 4 3 2 36 36 H 0.96993 * 120.00049 * 5.58526 * 8 6 5 37 37 H 1.09000 * 110.72779 * 215.31871 * 11 9 8 38 38 H 1.09002 * 110.72778 * 338.60004 * 11 9 8 39 39 H 1.08995 * 110.67952 * 278.98710 * 12 11 9 40 40 H 1.09006 * 110.78424 * 155.93367 * 12 11 9 41 41 H 1.09003 * 109.47303 * 47.40485 * 14 13 12 42 42 H 1.09005 * 109.47368 * 167.39666 * 14 13 12 43 43 H 0.97005 * 120.00101 * 359.97438 * 17 15 14 44 44 H 0.97001 * 119.99916 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.91859 * 265.97402 * 26 13 12 46 46 H 1.09004 * 110.08079 * 144.77522 * 26 13 12 47 47 H 1.09001 * 117.50277 * 145.01626 * 27 5 4 48 48 H 1.09005 * 117.49962 * 0.02562 * 27 5 4 49 49 H 1.09003 * 117.50062 * 107.47271 * 28 27 5 50 50 H 1.09000 * 117.50261 * 252.47109 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1575 2.5785 0.1053 6 6 3.4691 3.6597 -0.6874 7 8 2.7050 4.4230 -0.1355 8 7 3.7026 3.7784 -2.0095 9 6 3.1311 4.9017 -2.7563 10 1 2.1539 5.1660 -2.3519 11 6 4.0811 6.1201 -2.7032 12 6 4.8598 6.0075 -4.0410 13 7 3.8277 5.5290 -4.9959 14 6 4.4481 4.9116 -6.1757 15 6 5.0620 5.9832 -7.0393 16 8 4.9894 7.1469 -6.7050 17 7 5.6908 5.6486 -8.1834 18 6 6.2497 6.6235 -8.9688 19 1 6.1858 7.6596 -8.6708 20 6 6.8984 6.2785 -10.1482 21 7 6.9766 5.0178 -10.5104 22 14 7.6594 7.6068 -11.2186 23 1 9.0668 7.8324 -10.8020 24 1 7.6267 7.1766 -12.6396 25 1 6.8897 8.8675 -11.0652 26 6 3.0129 4.5457 -4.2497 27 6 5.6786 2.6645 0.2446 28 6 4.7826 2.9735 1.4456 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8620 0.7104 -0.9261 35 1 3.8523 0.5799 0.8490 36 1 4.2490 3.1201 -2.4664 37 1 3.5140 7.0501 -2.6633 38 1 4.7591 6.0439 -1.8531 39 1 5.6698 5.2833 -3.9551 40 1 5.2457 6.9800 -4.3469 41 1 5.2227 4.2145 -5.8560 42 1 3.6898 4.3752 -6.7462 43 1 5.7485 4.7179 -8.4509 44 1 7.4291 4.7769 -11.3339 45 1 3.3945 3.5395 -4.4230 46 1 1.9712 4.6070 -4.5648 47 1 6.1816 3.5031 -0.2370 48 1 6.2364 1.7281 0.2604 49 1 4.7503 2.2401 2.2514 50 1 4.6962 4.0153 1.7543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479954932.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:01 Heat of formation + Delta-G solvation = -85.074263 kcal Electronic energy + Delta-G solvation = -29676.636392 eV Core-core repulsion = 25511.870604 eV Total energy + Delta-G solvation = -4164.765788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73682 -39.19977 -38.21609 -37.66201 -36.86156 -34.46131 -33.78970 -31.59350 -31.35909 -30.83183 -28.64948 -26.98591 -26.59017 -24.48374 -24.01253 -23.27010 -22.80030 -21.38507 -20.63888 -19.73584 -19.18801 -17.88955 -17.23844 -16.89859 -16.73142 -16.34541 -16.00525 -15.64213 -15.37241 -15.11659 -14.93958 -14.59661 -14.41960 -14.24459 -13.92236 -13.82383 -13.59191 -13.32928 -12.77901 -12.63486 -12.45033 -12.25807 -12.08512 -11.90396 -11.87076 -11.85667 -11.58202 -11.50384 -11.33101 -11.20979 -11.04251 -10.95751 -10.80004 -10.47429 -10.39860 -10.22454 -10.02899 -9.95261 -9.50386 -9.26382 -8.52363 -8.03414 -7.95322 -6.42380 -3.83073 2.31258 2.77176 3.12729 3.17134 3.25897 3.31961 3.39347 3.89545 4.00565 4.21611 4.27538 4.33401 4.41742 4.47791 4.52984 4.70870 4.74965 4.88082 4.95604 5.01159 5.08055 5.12437 5.16881 5.21799 5.24383 5.28622 5.30208 5.34717 5.42723 5.47222 5.55683 5.56027 5.64058 5.69606 5.71693 5.76333 5.86754 5.90732 6.07784 6.25576 6.33322 6.37999 6.75331 7.08596 7.13437 7.24991 7.54694 7.95537 8.05679 8.61327 9.17834 9.53878 10.05938 10.75465 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.002016 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.978165 B =13888.881949 C =14258.406629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.071 4.071 5 C -0.161 4.161 6 C 0.552 3.448 7 O -0.533 6.533 8 N -0.718 5.718 9 C 0.132 3.868 10 H 0.099 0.901 11 C -0.130 4.130 12 C 0.041 3.959 13 N -0.489 5.489 14 C 0.037 3.963 15 C 0.445 3.555 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.030 3.970 27 C -0.157 4.157 28 C -0.143 4.143 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.401 0.599 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 -11.944 21.668 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.109 4.109 5 C -0.165 4.165 6 C 0.337 3.663 7 O -0.409 6.409 8 N -0.369 5.369 9 C 0.027 3.973 10 H 0.117 0.883 11 C -0.169 4.169 12 C -0.086 4.086 13 N -0.213 5.213 14 C -0.095 4.095 15 C 0.230 3.770 16 O -0.460 6.460 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.099 4.099 27 C -0.194 4.194 28 C -0.180 4.180 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.235 0.765 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.123 0.877 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.407 -10.396 21.896 25.345 hybrid contribution 1.003 -0.848 -0.894 1.589 sum -6.404 -11.244 21.002 24.669 Atomic orbital electron populations 1.22746 0.80701 1.02750 1.00236 1.87820 1.20014 1.27915 1.95516 1.22519 0.93510 0.84582 1.00943 1.20933 0.93287 0.92542 1.04110 1.21381 0.96737 0.95789 1.02544 1.19475 0.80989 0.83849 0.81951 1.90715 1.35663 1.44373 1.70179 1.46212 1.53596 1.28499 1.08609 1.21871 0.98308 0.86026 0.91054 0.88274 1.22953 0.98274 0.98217 0.97433 1.23344 0.92781 1.02225 0.90283 1.64508 1.20348 1.31526 1.04927 1.22077 0.98377 0.96016 0.93017 1.19677 0.84100 0.89598 0.83604 1.90514 1.62699 1.19656 1.73083 1.41860 1.49056 1.10130 1.19241 1.19692 1.30850 0.90738 1.01427 0.87931 1.25257 0.97867 0.97114 0.97778 1.69612 1.43844 1.16136 1.24843 0.85859 0.79279 0.80535 0.78634 1.20453 1.20938 1.19407 1.23181 1.00453 0.94913 0.91347 1.23134 0.90134 1.04245 1.01926 1.23086 1.00911 1.03480 0.90516 0.93942 0.89511 0.93983 0.92605 0.93316 0.90177 0.89765 0.76474 0.89695 0.91079 0.94431 0.88198 0.93250 0.89314 0.77550 0.91904 0.93263 0.89194 0.87975 0.87519 0.87659 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.83 10.70 -35.23 -0.38 -4.20 16 3 C 0.06 0.56 5.32 37.16 0.20 0.75 16 4 C -0.07 -0.53 5.72 -26.74 -0.15 -0.68 16 5 C -0.16 -1.29 2.18 -155.63 -0.34 -1.63 16 6 C 0.55 5.87 5.46 -10.98 -0.06 5.81 16 7 O -0.53 -7.60 16.64 5.55 0.09 -7.51 16 8 N -0.72 -6.85 5.07 -52.49 -0.27 -7.12 16 9 C 0.13 1.50 3.36 -66.58 -0.22 1.27 16 10 H 0.10 1.21 7.53 -51.93 -0.39 0.82 16 11 C -0.13 -1.63 6.80 -24.73 -0.17 -1.80 16 12 C 0.04 0.62 5.94 -1.76 -0.01 0.61 16 13 N -0.49 -7.80 4.91 -231.73 -1.14 -8.93 16 14 C 0.04 0.63 5.19 -4.98 -0.03 0.61 16 15 C 0.45 10.35 7.61 -10.99 -0.08 10.27 16 16 O -0.58 -15.43 14.64 5.54 0.08 -15.35 16 17 N -0.57 -14.17 5.29 -10.96 -0.06 -14.23 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 22 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.03 0.35 6.44 -2.76 -0.02 0.34 16 27 C -0.16 -1.00 9.95 -26.74 -0.27 -1.27 16 28 C -0.14 -1.03 9.81 -26.70 -0.26 -1.29 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.56 7.95 -51.93 -0.41 0.15 16 36 H 0.40 3.13 8.31 -40.82 -0.34 2.79 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 39 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 40 H 0.10 1.83 7.10 -51.93 -0.37 1.46 16 41 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 42 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 43 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 45 H 0.05 0.51 7.25 -51.93 -0.38 0.13 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.11 0.60 8.08 -51.93 -0.42 0.18 16 50 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 411.29 15.07 6.20 6.20 Total: -1.00 -33.25 411.29 -8.71 -41.95 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.40 Total: 10.46 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.54 Total: 6.44 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.74 Total: -53.94 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.20 Total: -27.06 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.25 -8.71 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479954932.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.121 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds