Wall clock time and date at job start Sat Apr 11 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00546 * 2 1 4 4 C 1.52998 * 112.90763 * 306.23371 * 3 2 1 5 5 C 1.50702 * 109.47175 * 291.17649 * 4 3 2 6 6 O 1.21283 * 119.99838 * 4.79664 * 5 4 3 7 7 N 1.34775 * 120.00087 * 184.79125 * 5 4 3 8 8 C 1.47023 * 125.64983 * 0.02928 * 7 5 4 9 9 C 1.54326 * 107.27028 * 181.01998 * 8 7 5 10 10 C 1.55156 * 102.94361 * 22.19346 * 9 8 7 11 11 H 1.08997 * 111.00235 * 82.60747 * 10 9 8 12 12 N 1.46894 * 111.00349 * 206.42343 * 10 9 8 13 13 C 1.46899 * 110.99999 * 273.54778 * 12 10 9 14 14 C 1.50703 * 109.47168 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99982 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00152 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00218 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99972 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99888 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99956 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00426 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46604 * 90.00173 * 21 19 17 23 23 H 1.48496 * 109.47542 * 210.00117 * 21 19 17 24 24 H 1.48498 * 109.47108 * 330.00565 * 21 19 17 25 25 C 1.47420 * 125.64615 * 179.71651 * 7 5 4 26 26 C 1.53781 * 113.61966 * 174.97878 * 3 2 1 27 27 C 1.53781 * 87.17215 * 220.06530 * 26 3 2 28 28 C 1.53780 * 87.08248 * 25.38950 * 27 26 3 29 29 H 1.09005 * 109.46662 * 65.43840 * 1 2 3 30 30 H 1.08997 * 109.47580 * 185.43804 * 1 2 3 31 31 H 1.08993 * 109.47316 * 305.44334 * 1 2 3 32 32 H 1.09005 * 109.47253 * 51.17787 * 4 3 2 33 33 H 1.09001 * 109.47343 * 171.17698 * 4 3 2 34 34 H 1.08996 * 109.87962 * 300.43938 * 8 7 5 35 35 H 1.09005 * 109.88017 * 61.60043 * 8 7 5 36 36 H 1.09004 * 110.71580 * 140.55837 * 9 8 7 37 37 H 1.09004 * 110.71691 * 263.65256 * 9 8 7 38 38 H 1.00903 * 110.99862 * 37.50309 * 12 10 9 39 39 H 1.09006 * 109.46758 * 299.99646 * 13 12 10 40 40 H 1.08996 * 109.47392 * 59.99754 * 13 12 10 41 41 H 0.97006 * 119.99883 * 0.02562 * 16 14 13 42 42 H 0.96995 * 120.00130 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.36904 * 274.74749 * 25 7 5 44 44 H 1.09001 * 110.37009 * 37.07516 * 25 7 5 45 45 H 1.08998 * 113.61411 * 105.46692 * 26 3 2 46 46 H 1.09004 * 113.61273 * 334.65501 * 26 3 2 47 47 H 1.08996 * 113.61420 * 139.94264 * 27 26 3 48 48 H 1.08999 * 113.61475 * 270.83577 * 27 26 3 49 49 H 1.09000 * 113.61304 * 89.11966 * 28 27 26 50 50 H 1.09008 * 113.60960 * 219.93257 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 1.4916 2.1883 -1.1368 5 6 1.9973 1.6596 -2.4543 6 8 2.6301 0.6255 -2.4900 7 7 1.7464 2.3358 -3.5928 8 6 0.9959 3.5961 -3.6932 9 6 0.9416 3.9791 -5.1872 10 6 1.1762 2.6225 -5.9026 11 1 0.2496 2.0529 -5.9735 12 7 1.7704 2.8235 -7.2308 13 6 0.7310 3.0525 -8.2434 14 6 1.3771 3.2534 -9.5900 15 8 2.5847 3.2106 -9.6957 16 7 0.6132 3.4807 -10.6767 17 6 1.2010 3.6641 -11.9017 18 1 2.2762 3.6259 -11.9959 19 6 0.4133 3.8989 -13.0220 20 7 0.9767 4.0742 -14.1963 21 14 -1.4464 3.9643 -12.8594 22 1 -1.8697 5.3593 -12.5763 23 1 -2.0706 3.5050 -14.1261 24 1 -1.8773 3.0807 -11.7464 25 6 2.1844 1.9375 -4.9429 26 6 3.5431 1.2972 0.1233 27 6 3.3980 2.5075 1.0608 28 6 1.9835 1.9937 1.3768 29 1 -0.3633 0.4272 -0.9347 30 1 -0.3634 -1.0230 0.0974 31 1 -0.3633 0.5959 0.8372 32 1 0.4016 2.1789 -1.1358 33 1 1.8463 3.2091 -0.9948 34 1 -0.0146 3.4573 -3.3090 35 1 1.5055 4.3769 -3.1285 36 1 -0.0356 4.3874 -5.4453 37 1 1.7316 4.6891 -5.4322 38 1 2.4362 3.5816 -7.2181 39 1 0.0673 2.1888 -8.2845 40 1 0.1562 3.9402 -7.9797 41 1 -0.3526 3.5154 -10.5921 42 1 0.4269 4.2378 -14.9784 43 1 3.1963 2.2947 -5.1342 44 1 2.1364 0.8542 -5.0532 45 1 4.0575 1.5268 -0.8099 46 1 3.9368 0.4080 0.6159 47 1 4.0734 2.4809 1.9159 48 1 3.4087 3.4658 0.5416 49 1 1.9494 1.2946 2.2125 50 1 1.2390 2.7859 1.4571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480614041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:12 Heat of formation + Delta-G solvation = -76.584521 kcal Electronic energy + Delta-G solvation = -29550.451468 eV Core-core repulsion = 25386.053823 eV Total energy + Delta-G solvation = -4164.397645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99224 -39.66030 -38.52000 -37.57216 -36.18422 -34.87164 -33.88942 -31.72172 -31.27536 -30.17671 -28.82121 -27.43041 -26.31404 -25.94024 -24.19223 -23.53939 -23.11062 -21.11943 -19.95527 -19.42941 -18.90687 -18.42499 -17.56352 -17.26711 -16.71039 -16.13647 -15.71930 -15.60749 -15.40667 -15.19174 -14.90824 -14.84078 -14.57183 -14.03320 -13.77941 -13.70727 -13.33247 -13.09520 -12.98820 -12.92239 -12.72540 -12.65664 -12.39969 -12.31653 -12.15040 -12.12774 -11.75827 -11.70533 -11.46636 -11.31805 -11.19290 -11.11243 -11.04920 -10.62758 -10.62144 -10.07361 -10.00353 -9.70895 -9.60643 -8.89015 -8.64221 -8.25688 -8.19750 -6.33743 -3.85470 2.42622 2.62595 2.99850 3.03421 3.12576 3.48002 3.69344 3.90857 3.96852 4.07394 4.11910 4.17727 4.31051 4.33510 4.42496 4.62041 4.65931 4.83885 4.86034 4.89325 4.93627 4.99315 5.04199 5.09180 5.12016 5.18305 5.22751 5.27431 5.39045 5.40679 5.46639 5.48163 5.54199 5.63284 5.73019 5.76881 5.79722 5.80419 5.83237 5.90172 5.93352 6.02867 6.96228 6.96831 7.26590 7.44363 7.54837 7.97269 8.11339 8.56289 8.91960 9.39091 9.78653 10.79291 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029515 B = 0.001784 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.430155 B =15689.236695 C =15951.830041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.106 3.894 4 C -0.147 4.147 5 C 0.528 3.472 6 O -0.516 6.516 7 N -0.623 5.623 8 C 0.104 3.896 9 C -0.168 4.168 10 C 0.079 3.921 11 H 0.095 0.905 12 N -0.656 5.656 13 C 0.050 3.950 14 C 0.448 3.552 15 O -0.564 6.564 16 N -0.589 5.589 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.880 5.880 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.117 3.883 26 C -0.112 4.112 27 C -0.144 4.144 28 C -0.158 4.158 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.355 0.645 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 0.327 32.210 32.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.274 6.274 3 C 0.065 3.935 4 C -0.187 4.187 5 C 0.316 3.684 6 O -0.391 6.391 7 N -0.360 5.360 8 C -0.019 4.019 9 C -0.208 4.208 10 C -0.033 4.033 11 H 0.113 0.887 12 N -0.287 5.287 13 C -0.083 4.083 14 C 0.234 3.766 15 O -0.446 6.446 16 N -0.229 5.229 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.520 5.520 21 Si 0.707 3.293 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.006 4.006 26 C -0.149 4.149 27 C -0.182 4.182 28 C -0.196 4.196 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.176 0.824 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.110 0.890 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.465 -1.118 31.791 32.122 hybrid contribution -2.261 1.390 0.025 2.654 sum -6.726 0.272 31.816 32.520 Atomic orbital electron populations 1.22702 0.82038 1.02670 0.99526 1.88069 1.18842 1.26090 1.94441 1.22669 0.95246 0.83325 0.92219 1.22000 1.02962 1.01258 0.92513 1.20030 0.80323 0.83975 0.84049 1.90775 1.39378 1.22811 1.86142 1.48525 1.55516 1.24728 1.07187 1.21963 0.96191 0.86049 0.97722 1.23469 1.03630 0.99450 0.94277 1.22798 0.97379 0.94574 0.88541 0.88737 1.59904 1.15764 1.50989 1.02087 1.21721 0.93942 1.00814 0.91822 1.19675 0.87895 0.84046 0.84986 1.90578 1.13959 1.54553 1.85480 1.42199 1.07518 1.65051 1.08119 1.19435 0.96010 1.46010 0.81980 0.86250 1.25049 0.98532 0.97572 0.95030 1.69622 1.35872 1.47629 0.98881 0.86665 0.85400 0.78780 0.78494 1.19670 1.20145 1.19484 1.22175 0.98054 1.00992 0.79372 1.22990 0.93160 0.98464 1.00304 1.22762 0.97036 0.98134 1.00236 1.23613 0.97856 1.00425 0.97715 0.94410 0.89690 0.94142 0.88348 0.87877 0.91457 0.91393 0.89807 0.89977 0.82410 0.89339 0.93527 0.79697 0.91582 0.90675 0.89742 0.90372 0.89026 0.90580 0.90028 0.88985 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.31 101.05 1.04 1.25 16 2 O -0.36 -3.91 10.19 -43.98 -0.45 -4.36 16 3 C 0.11 0.92 0.53 -89.72 -0.05 0.88 16 4 C -0.15 -1.12 4.02 -27.88 -0.11 -1.23 16 5 C 0.53 5.93 7.34 -10.99 -0.08 5.85 16 6 O -0.52 -7.93 14.72 -3.20 -0.05 -7.97 16 7 N -0.62 -6.22 3.32 -170.37 -0.57 -6.78 16 8 C 0.10 0.72 6.48 -3.06 -0.02 0.70 16 9 C -0.17 -1.31 6.53 -24.90 -0.16 -1.48 16 10 C 0.08 0.84 3.33 -65.44 -0.22 0.62 16 11 H 0.09 0.96 7.92 -51.93 -0.41 0.55 16 12 N -0.66 -9.34 6.00 -105.60 -0.63 -9.98 16 13 C 0.05 0.76 6.04 -4.98 -0.03 0.73 16 14 C 0.45 9.85 7.82 -10.99 -0.09 9.76 16 15 O -0.56 -14.86 15.78 5.55 0.09 -14.77 16 16 N -0.59 -13.69 5.09 -10.96 -0.06 -13.75 16 17 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 18 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 21 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 25 C 0.12 1.35 6.61 -2.41 -0.02 1.34 16 26 C -0.11 -1.01 6.83 -25.92 -0.18 -1.19 16 27 C -0.14 -0.89 7.73 -25.92 -0.20 -1.09 16 28 C -0.16 -0.99 7.11 -25.83 -0.18 -1.17 16 29 H 0.04 0.28 6.75 -51.93 -0.35 -0.07 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.23 7.85 -51.93 -0.41 -0.17 16 32 H 0.10 0.60 6.48 -51.93 -0.34 0.26 16 33 H 0.10 0.57 7.33 -51.93 -0.38 0.19 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 38 H 0.36 5.21 8.01 -39.29 -0.31 4.89 16 39 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 45 H 0.08 0.83 6.92 -51.93 -0.36 0.47 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.43 7.64 -51.93 -0.40 0.03 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.33 8.11 -51.92 -0.42 -0.09 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -35.28 399.55 -8.34 -43.62 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.22 Total: 11.12 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -0.54 Total: 7.28 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.48 Total: -55.23 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.41 Total: -27.10 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.28 -8.34 -43.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480614041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.968 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds