Wall clock time and date at job start Sat Apr 11 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00546 * 2 1 4 4 C 1.52998 * 112.90763 * 306.23371 * 3 2 1 5 5 C 1.50702 * 109.47175 * 291.17649 * 4 3 2 6 6 O 1.21283 * 119.99838 * 4.79664 * 5 4 3 7 7 N 1.34775 * 120.00087 * 184.79125 * 5 4 3 8 8 C 1.47023 * 125.64983 * 0.02928 * 7 5 4 9 9 C 1.54326 * 107.27028 * 181.01998 * 8 7 5 10 10 C 1.55156 * 102.94361 * 22.19346 * 9 8 7 11 11 H 1.08997 * 111.00235 * 82.60747 * 10 9 8 12 12 N 1.46894 * 111.00349 * 206.42343 * 10 9 8 13 13 C 1.46899 * 110.99999 * 273.54778 * 12 10 9 14 14 C 1.50703 * 109.47168 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99982 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00152 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00218 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99972 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99888 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99956 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00426 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46604 * 90.00173 * 21 19 17 23 23 H 1.48496 * 109.47542 * 210.00117 * 21 19 17 24 24 H 1.48498 * 109.47108 * 330.00565 * 21 19 17 25 25 C 1.47420 * 125.64615 * 179.71651 * 7 5 4 26 26 C 1.53781 * 113.61966 * 174.97878 * 3 2 1 27 27 C 1.53781 * 87.17215 * 220.06530 * 26 3 2 28 28 C 1.53780 * 87.08248 * 25.38950 * 27 26 3 29 29 H 1.09005 * 109.46662 * 65.43840 * 1 2 3 30 30 H 1.08997 * 109.47580 * 185.43804 * 1 2 3 31 31 H 1.08993 * 109.47316 * 305.44334 * 1 2 3 32 32 H 1.09005 * 109.47253 * 51.17787 * 4 3 2 33 33 H 1.09001 * 109.47343 * 171.17698 * 4 3 2 34 34 H 1.08996 * 109.87962 * 300.43938 * 8 7 5 35 35 H 1.09005 * 109.88017 * 61.60043 * 8 7 5 36 36 H 1.09004 * 110.71580 * 140.55837 * 9 8 7 37 37 H 1.09004 * 110.71691 * 263.65256 * 9 8 7 38 38 H 1.00903 * 110.99862 * 37.50309 * 12 10 9 39 39 H 1.09006 * 109.46758 * 299.99646 * 13 12 10 40 40 H 1.08996 * 109.47392 * 59.99754 * 13 12 10 41 41 H 0.97006 * 119.99883 * 0.02562 * 16 14 13 42 42 H 0.96995 * 120.00130 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.36904 * 274.74749 * 25 7 5 44 44 H 1.09001 * 110.37009 * 37.07516 * 25 7 5 45 45 H 1.08998 * 113.61411 * 105.46692 * 26 3 2 46 46 H 1.09004 * 113.61273 * 334.65501 * 26 3 2 47 47 H 1.08996 * 113.61420 * 139.94264 * 27 26 3 48 48 H 1.08999 * 113.61475 * 270.83577 * 27 26 3 49 49 H 1.09000 * 113.61304 * 89.11966 * 28 27 26 50 50 H 1.09008 * 113.60960 * 219.93257 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 1.4916 2.1883 -1.1368 5 6 1.9973 1.6596 -2.4543 6 8 2.6301 0.6255 -2.4900 7 7 1.7464 2.3358 -3.5928 8 6 0.9959 3.5961 -3.6932 9 6 0.9416 3.9791 -5.1872 10 6 1.1762 2.6225 -5.9026 11 1 0.2496 2.0529 -5.9735 12 7 1.7704 2.8235 -7.2308 13 6 0.7310 3.0525 -8.2434 14 6 1.3771 3.2534 -9.5900 15 8 2.5847 3.2106 -9.6957 16 7 0.6132 3.4807 -10.6767 17 6 1.2010 3.6641 -11.9017 18 1 2.2762 3.6259 -11.9959 19 6 0.4133 3.8989 -13.0220 20 7 0.9767 4.0742 -14.1963 21 14 -1.4464 3.9643 -12.8594 22 1 -1.8697 5.3593 -12.5763 23 1 -2.0706 3.5050 -14.1261 24 1 -1.8773 3.0807 -11.7464 25 6 2.1844 1.9375 -4.9429 26 6 3.5431 1.2972 0.1233 27 6 3.3980 2.5075 1.0608 28 6 1.9835 1.9937 1.3768 29 1 -0.3633 0.4272 -0.9347 30 1 -0.3634 -1.0230 0.0974 31 1 -0.3633 0.5959 0.8372 32 1 0.4016 2.1789 -1.1358 33 1 1.8463 3.2091 -0.9948 34 1 -0.0146 3.4573 -3.3090 35 1 1.5055 4.3769 -3.1285 36 1 -0.0356 4.3874 -5.4453 37 1 1.7316 4.6891 -5.4322 38 1 2.4362 3.5816 -7.2181 39 1 0.0673 2.1888 -8.2845 40 1 0.1562 3.9402 -7.9797 41 1 -0.3526 3.5154 -10.5921 42 1 0.4269 4.2378 -14.9784 43 1 3.1963 2.2947 -5.1342 44 1 2.1364 0.8542 -5.0532 45 1 4.0575 1.5268 -0.8099 46 1 3.9368 0.4080 0.6159 47 1 4.0734 2.4809 1.9159 48 1 3.4087 3.4658 0.5416 49 1 1.9494 1.2946 2.2125 50 1 1.2390 2.7859 1.4571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480614041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:11 Heat of formation + Delta-G solvation = -104.677294 kcal Electronic energy + Delta-G solvation = -29551.669662 eV Core-core repulsion = 25386.053823 eV Total energy + Delta-G solvation = -4165.615839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69367 -40.53831 -40.06186 -38.55213 -36.80899 -36.22232 -35.58902 -33.74565 -32.16064 -30.83940 -29.75098 -28.01757 -27.74499 -26.53436 -25.53828 -24.50793 -23.72664 -21.94193 -21.30612 -20.65999 -20.27352 -19.54163 -18.35439 -17.94768 -17.73808 -17.42489 -16.95168 -16.51160 -16.42355 -16.08507 -16.04654 -15.63865 -15.61105 -15.17608 -14.97561 -14.67652 -14.54402 -14.23319 -14.04965 -13.88878 -13.80758 -13.74024 -13.31064 -13.19284 -13.04428 -12.91793 -12.84989 -12.64915 -12.40756 -12.35703 -12.28274 -11.97265 -11.89227 -11.75332 -11.68650 -11.50261 -11.18231 -10.90353 -10.45708 -10.34387 -10.24578 -9.68157 -9.31513 -8.40595 -6.01960 1.31323 1.36755 1.46145 1.62437 1.85542 1.96437 2.24216 2.73237 2.91544 3.15896 3.27925 3.37110 3.54210 3.61607 3.64508 3.72982 3.86682 4.00344 4.05114 4.16552 4.26871 4.33340 4.36321 4.39770 4.43624 4.46563 4.53292 4.56276 4.57598 4.68619 4.80994 4.81776 4.82848 4.86710 4.87702 5.03281 5.05696 5.08923 5.09773 5.23703 5.25123 5.41631 5.53335 5.90335 6.03127 6.33707 6.38853 6.51445 6.60155 6.88765 7.16965 7.40284 7.97336 8.77088 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029515 B = 0.001784 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.430155 B =15689.236695 C =15951.830041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.094 3.906 4 C -0.138 4.138 5 C 0.520 3.480 6 O -0.571 6.571 7 N -0.621 5.621 8 C 0.102 3.898 9 C -0.159 4.159 10 C 0.085 3.915 11 H 0.107 0.893 12 N -0.680 5.680 13 C 0.067 3.933 14 C 0.446 3.554 15 O -0.617 6.617 16 N -0.589 5.589 17 C -0.330 4.330 18 H 0.053 0.947 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.254 1.254 23 H -0.278 1.278 24 H -0.230 1.230 25 C 0.116 3.884 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.144 4.144 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.349 0.651 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.391 0.609 42 H 0.279 0.721 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 2.316 35.256 36.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.054 3.946 4 C -0.177 4.177 5 C 0.310 3.690 6 O -0.450 6.450 7 N -0.356 5.356 8 C -0.020 4.020 9 C -0.199 4.199 10 C -0.025 4.025 11 H 0.125 0.875 12 N -0.312 5.312 13 C -0.065 4.065 14 C 0.234 3.766 15 O -0.501 6.501 16 N -0.231 5.231 17 C -0.459 4.459 18 H 0.071 0.929 19 C -0.216 4.216 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.153 1.153 25 C -0.008 4.008 26 C -0.165 4.165 27 C -0.169 4.169 28 C -0.182 4.182 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.116 0.884 49 H 0.107 0.893 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.073 0.896 34.877 36.049 hybrid contribution -0.632 0.709 -0.938 1.335 sum -9.705 1.605 33.938 35.335 Atomic orbital electron populations 1.22835 0.80633 1.03334 1.00495 1.88023 1.20621 1.27818 1.94753 1.22918 0.94415 0.83106 0.94167 1.22042 1.04170 1.02003 0.89493 1.20787 0.79472 0.83335 0.85379 1.90754 1.41886 1.25379 1.86973 1.48606 1.55255 1.25705 1.06066 1.22237 0.97473 0.84809 0.97501 1.23424 1.04842 0.97321 0.94300 1.22734 0.96792 0.96529 0.86491 0.87533 1.59821 1.16218 1.51258 1.03896 1.21626 0.93783 1.03680 0.87461 1.21052 0.87410 0.81089 0.87018 1.90559 1.16825 1.56012 1.86741 1.42011 1.08536 1.65746 1.06836 1.19000 0.93660 1.48286 0.84947 0.92870 1.26168 1.05707 0.95989 0.93717 1.69814 1.38879 1.48684 1.00215 0.85335 0.75938 0.80335 0.79703 1.17845 1.20301 1.15275 1.22001 0.97981 0.99510 0.81310 1.23041 0.94084 0.99534 0.99883 1.22766 0.97283 0.97268 0.99619 1.23519 0.98325 1.00541 0.95790 0.94266 0.89664 0.91867 0.85991 0.85029 0.88664 0.89223 0.87354 0.90336 0.83064 0.86888 0.89347 0.77351 0.91171 0.92410 0.92487 0.92862 0.90724 0.89804 0.88439 0.89303 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.31 113.37 1.17 1.49 16 2 O -0.39 -8.52 10.19 -140.61 -1.43 -9.95 16 3 C 0.09 1.51 0.53 -10.21 -0.01 1.51 16 4 C -0.14 -1.71 4.02 29.85 0.12 -1.59 16 5 C 0.52 11.27 7.34 87.66 0.64 11.91 16 6 O -0.57 -18.42 14.72 5.33 0.08 -18.34 16 7 N -0.62 -11.35 3.32 -811.33 -2.70 -14.05 16 8 C 0.10 0.95 6.48 86.73 0.56 1.52 16 9 C -0.16 -1.83 6.53 31.78 0.21 -1.62 16 10 C 0.09 1.60 3.33 46.39 0.15 1.76 16 11 H 0.11 1.78 7.92 -2.39 -0.02 1.76 16 12 N -0.68 -18.45 6.00 -488.01 -2.93 -21.37 16 13 C 0.07 1.83 6.04 85.56 0.52 2.35 16 14 C 0.45 19.46 7.82 87.66 0.69 20.15 16 15 O -0.62 -33.85 15.78 -3.07 -0.05 -33.90 16 16 N -0.59 -26.99 5.09 -306.99 -1.56 -28.55 16 17 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 18 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 19 C -0.02 -0.95 5.50 84.92 0.47 -0.49 16 20 N -0.94 -56.18 13.96 21.66 0.30 -55.87 16 21 Si 0.97 37.80 27.74 68.60 1.90 39.70 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 25 C 0.12 2.69 6.61 86.94 0.57 3.26 16 26 C -0.13 -2.37 6.83 31.12 0.21 -2.16 16 27 C -0.13 -1.35 7.73 31.12 0.24 -1.11 16 28 C -0.14 -1.39 7.11 31.18 0.22 -1.17 16 29 H 0.04 0.51 6.75 -2.38 -0.02 0.49 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.55 7.85 -2.39 -0.02 0.53 16 32 H 0.12 0.95 6.48 -2.38 -0.02 0.94 16 33 H 0.13 0.86 7.33 -2.39 -0.02 0.85 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 1.00 7.81 -2.38 -0.02 0.98 16 38 H 0.35 10.09 8.01 -89.69 -0.72 9.37 16 39 H 0.11 2.64 8.09 -2.38 -0.02 2.62 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.39 14.50 5.76 -92.70 -0.53 13.96 16 42 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.06 1.61 8.03 -2.39 -0.02 1.59 16 45 H 0.05 1.22 6.92 -2.39 -0.02 1.20 16 46 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.10 0.70 7.64 -2.39 -0.02 0.68 16 49 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.10 0.46 8.11 -2.38 -0.02 0.44 16 Total: -1.00 -87.43 399.55 -0.11 -87.55 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -0.36 Total: 37.27 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.62 Total: 17.51 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -6.88 Total: -119.85 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -1.40 Total: -62.19 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.70 kcal Total: -87.43 -0.11 -87.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480614041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.131 kcal (2) G-P(sol) polarization free energy of solvation -87.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds