Wall clock time and date at job start Sat Apr 11 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00455 * 2 1 4 4 C 1.52999 * 109.46528 * 66.04628 * 3 2 1 5 5 N 1.46498 * 109.46823 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00241 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00084 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.74878 * 59.30015 * 8 6 5 10 10 C 1.55296 * 110.84929 * 295.82593 * 8 6 5 11 11 C 1.54947 * 100.94353 * 207.67899 * 10 8 6 12 12 O 1.43645 * 105.13449 * 36.44407 * 11 10 8 13 13 C 1.43586 * 110.00997 * 335.39097 * 12 11 10 14 14 H 1.09000 * 109.79624 * 121.38302 * 13 12 11 15 15 C 1.53008 * 110.04189 * 242.46750 * 13 12 11 16 16 C 1.52996 * 117.49835 * 6.66555 * 15 13 12 17 17 C 1.52992 * 117.49732 * 298.04350 * 15 13 12 18 18 C 1.46902 * 110.99609 * 236.04983 * 2 1 3 19 19 C 1.50702 * 109.47027 * 293.95228 * 18 2 1 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 2 21 21 N 1.34777 * 119.99928 * 179.72353 * 19 18 2 22 22 C 1.37101 * 120.00327 * 180.27606 * 21 19 18 23 23 H 1.08001 * 119.99426 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00412 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00005 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47191 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46534 * 120.00189 * 26 24 22 29 29 H 1.48498 * 109.47283 * 240.00132 * 26 24 22 30 30 H 1.09000 * 109.47177 * 183.95141 * 1 2 3 31 31 H 1.09001 * 109.46926 * 303.95384 * 1 2 3 32 32 H 1.09005 * 109.47416 * 63.94774 * 1 2 3 33 33 H 1.08993 * 109.47118 * 186.05055 * 3 2 1 34 34 H 1.08997 * 109.47027 * 306.05187 * 3 2 1 35 35 H 1.09001 * 109.47532 * 299.99814 * 4 3 2 36 36 H 1.08997 * 109.47010 * 60.00549 * 4 3 2 37 37 H 0.97005 * 120.00391 * 0.02562 * 5 4 3 38 38 H 1.09009 * 111.12476 * 325.59683 * 10 8 6 39 39 H 1.08997 * 111.12671 * 89.71340 * 10 8 6 40 40 H 1.08999 * 110.30831 * 155.36195 * 11 10 8 41 41 H 1.09001 * 110.30783 * 277.43193 * 11 10 8 42 42 H 1.09003 * 115.54763 * 152.37319 * 15 13 12 43 43 H 1.09002 * 117.50012 * 0.02562 * 16 15 13 44 44 H 1.09003 * 117.49872 * 145.02206 * 16 15 13 45 45 H 1.09002 * 117.49708 * 214.97868 * 17 15 13 46 46 H 1.09002 * 117.50119 * 359.97438 * 17 15 13 47 47 H 1.09004 * 109.47131 * 173.95472 * 18 2 1 48 48 H 1.09000 * 109.47732 * 53.95583 * 18 2 1 49 49 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 50 50 H 0.96996 * 120.00330 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1561 3.4252 1.3181 6 6 1.9556 4.2240 2.3850 7 8 1.3405 3.8105 3.3450 8 6 2.4957 5.6309 2.3850 9 1 2.0833 6.2029 1.5538 10 6 4.0479 5.6271 2.3371 11 6 4.3676 6.9651 3.0501 12 8 3.3753 7.0867 4.0816 13 6 2.2063 6.3304 3.7305 14 1 2.0046 5.5845 4.4992 15 6 1.0029 7.2637 3.5821 16 6 1.2623 8.7693 3.6640 17 6 0.5620 8.0497 4.8183 18 6 1.9953 -0.7659 -1.1377 19 6 1.6368 -2.2204 -0.9730 20 8 1.0045 -2.5832 -0.0035 21 7 2.0134 -3.1171 -1.9060 22 6 1.6824 -4.4394 -1.7591 23 1 1.1194 -4.7624 -0.8958 24 6 2.0711 -5.3640 -2.7206 25 7 2.7565 -4.9710 -3.7708 26 14 1.6206 -7.1657 -2.5200 27 1 0.8535 -7.3470 -1.2615 28 1 0.7902 -7.5995 -3.6723 29 1 2.8595 -7.9828 -2.4672 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5740 0.8525 32 1 -0.3634 0.4514 -0.9233 33 1 3.0797 1.3443 -0.1083 34 1 1.5612 1.9274 -0.8308 35 1 0.5473 2.0844 1.4266 36 1 2.0659 1.5014 2.1491 37 1 2.6478 3.7560 0.5501 38 1 4.4559 4.7804 2.8893 39 1 4.4092 5.6330 1.3087 40 1 5.3656 6.9318 3.4871 41 1 4.2899 7.7956 2.3485 42 1 0.2254 6.9230 2.8984 43 1 2.2903 9.0950 3.8231 44 1 0.6553 9.4195 3.0340 45 1 -0.5058 8.2266 4.9478 46 1 1.1288 7.9018 5.7375 47 1 3.0796 -0.6611 -1.1758 48 1 1.5610 -0.3872 -2.0629 49 1 2.5188 -2.8270 -2.6815 50 1 3.0282 -5.6165 -4.4419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480893645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:28 Heat of formation + Delta-G solvation = -83.658699 kcal Electronic energy + Delta-G solvation = -28935.965323 eV Core-core repulsion = 24771.260918 eV Total energy + Delta-G solvation = -4164.704405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94689 -39.20410 -38.61685 -36.83527 -36.66714 -34.76458 -33.84260 -32.89186 -31.27287 -29.83822 -29.41532 -27.73452 -25.59707 -24.58591 -23.57910 -22.89136 -22.58210 -21.30354 -20.65676 -20.18887 -19.20021 -18.01079 -17.87615 -17.20731 -16.38680 -16.09142 -15.90236 -15.71780 -15.53009 -15.19177 -15.00342 -14.65184 -14.35106 -14.27342 -13.85470 -13.73245 -13.50750 -13.31836 -13.11022 -13.07324 -12.52849 -12.15481 -12.03882 -11.86776 -11.84841 -11.69405 -11.56490 -11.52220 -11.43450 -11.31335 -11.09692 -10.97350 -10.61385 -10.41808 -10.35296 -10.24460 -10.15388 -9.81780 -9.50966 -9.29808 -8.51968 -8.01488 -7.91596 -6.43805 -3.84539 2.30190 2.71929 3.15100 3.25987 3.31217 3.33427 3.48048 3.87572 3.91058 3.99563 4.17349 4.21199 4.29568 4.56351 4.58025 4.66422 4.71049 4.80874 4.84856 4.91340 4.94892 5.07952 5.10599 5.22448 5.23621 5.29669 5.33342 5.39672 5.45366 5.58687 5.61064 5.65214 5.73023 5.79243 5.82282 5.83651 5.88467 5.91551 5.96213 6.15024 6.24700 6.53461 6.58703 7.12176 7.19666 7.28402 7.53849 7.90458 8.04613 8.59620 9.16456 9.52118 10.03890 10.73999 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033256 B = 0.001571 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.757251 B =17824.173847 C =18225.064716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.726 5.726 6 C 0.524 3.476 7 O -0.530 6.530 8 C -0.139 4.139 9 H 0.113 0.887 10 C -0.147 4.147 11 C 0.053 3.947 12 O -0.373 6.373 13 C 0.125 3.875 14 H 0.106 0.894 15 C -0.171 4.171 16 C -0.170 4.170 17 C -0.170 4.170 18 C 0.047 3.953 19 C 0.443 3.557 20 O -0.576 6.576 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.399 0.601 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 27.897 6.808 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.377 5.377 6 C 0.309 3.691 7 O -0.406 6.406 8 C -0.161 4.161 9 H 0.131 0.869 10 C -0.185 4.185 11 C -0.024 4.024 12 O -0.292 6.292 13 C 0.067 3.933 14 H 0.124 0.876 15 C -0.189 4.189 16 C -0.207 4.207 17 C -0.207 4.207 18 C -0.084 4.084 19 C 0.229 3.771 20 O -0.460 6.460 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.233 0.767 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.121 27.090 8.623 28.508 hybrid contribution 0.091 -0.324 -2.068 2.095 sum 2.212 26.766 6.555 27.645 Atomic orbital electron populations 1.22644 0.86445 1.04998 0.98944 1.61452 1.08977 1.10353 1.43125 1.22242 1.00749 0.89883 0.95570 1.21385 0.99686 0.80474 0.98771 1.45912 1.57907 1.14451 1.19479 1.20109 0.79770 0.86681 0.82557 1.90746 1.40502 1.75361 1.33979 1.22866 0.97476 0.94623 1.01088 0.86899 1.23288 0.92674 0.99607 1.02893 1.23347 0.92978 0.95808 0.90240 1.88495 1.25452 1.71847 1.43430 1.22167 0.84431 0.91574 0.95100 0.87615 1.22685 0.99798 0.93620 1.02810 1.22898 1.02330 0.93456 1.01983 1.22890 1.00621 1.03918 0.93265 1.21878 1.00666 0.94276 0.91586 1.19699 0.85567 0.86583 0.85274 1.90493 1.43790 1.80064 1.31645 1.41867 1.49477 1.07484 1.21280 1.19758 1.32810 0.82344 1.07859 0.87818 1.25258 0.96814 1.00584 0.95294 1.69617 1.38173 1.35704 1.10874 0.85800 0.78222 0.81892 0.78437 1.19198 1.20792 1.20744 0.88260 0.91905 0.96571 0.90273 0.94587 0.91037 0.90115 0.76684 0.89549 0.88956 0.89290 0.91857 0.87251 0.87874 0.89260 0.88940 0.88527 0.89330 0.93337 0.77519 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.01 60.06 0.54 0.82 16 2 N -0.51 -8.18 4.50 -244.37 -1.10 -9.28 16 3 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.36 5.61 -4.04 -0.02 1.33 16 5 N -0.73 -6.20 5.54 -60.29 -0.33 -6.54 16 6 C 0.52 5.32 7.15 -10.98 -0.08 5.24 16 7 O -0.53 -7.71 15.44 5.55 0.09 -7.63 16 8 C -0.14 -1.00 2.89 -89.83 -0.26 -1.25 16 9 H 0.11 0.61 7.85 -51.93 -0.41 0.20 16 10 C -0.15 -0.79 6.60 -24.49 -0.16 -0.95 16 11 C 0.05 0.31 7.78 38.19 0.30 0.61 16 12 O -0.37 -3.35 9.44 -35.23 -0.33 -3.68 16 13 C 0.12 1.13 3.33 -26.00 -0.09 1.04 16 14 H 0.11 1.22 6.82 -51.93 -0.35 0.87 16 15 C -0.17 -1.42 5.56 -90.62 -0.50 -1.93 16 16 C -0.17 -1.24 9.88 -26.74 -0.26 -1.50 16 17 C -0.17 -1.36 10.22 -26.74 -0.27 -1.64 16 18 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 19 C 0.44 10.25 7.51 -10.98 -0.08 10.17 16 20 O -0.58 -15.31 13.88 5.55 0.08 -15.23 16 21 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 22 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 26 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.10 1.94 5.88 -51.93 -0.31 1.63 16 31 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 34 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.40 2.17 8.47 -40.82 -0.35 1.82 16 38 H 0.09 0.56 8.03 -51.92 -0.42 0.14 16 39 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.11 0.89 8.12 -51.93 -0.42 0.46 16 43 H 0.10 0.79 7.07 -51.93 -0.37 0.43 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 48 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 49 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 50 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -33.48 404.87 -9.21 -42.68 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.16 Total: 10.02 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.18 Total: 5.32 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.77 Total: -53.45 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.17 Total: -26.54 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.48 -9.21 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480893645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.976 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds