Wall clock time and date at job start Sat Apr 11 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00455 * 2 1 4 4 C 1.52999 * 109.46528 * 66.04628 * 3 2 1 5 5 N 1.46498 * 109.46823 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00241 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00084 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.74878 * 59.30015 * 8 6 5 10 10 C 1.55296 * 110.84929 * 295.82593 * 8 6 5 11 11 C 1.54947 * 100.94353 * 207.67899 * 10 8 6 12 12 O 1.43645 * 105.13449 * 36.44407 * 11 10 8 13 13 C 1.43586 * 110.00997 * 335.39097 * 12 11 10 14 14 H 1.09000 * 109.79624 * 121.38302 * 13 12 11 15 15 C 1.53008 * 110.04189 * 242.46750 * 13 12 11 16 16 C 1.52996 * 117.49835 * 6.66555 * 15 13 12 17 17 C 1.52992 * 117.49732 * 298.04350 * 15 13 12 18 18 C 1.46902 * 110.99609 * 236.04983 * 2 1 3 19 19 C 1.50702 * 109.47027 * 293.95228 * 18 2 1 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 2 21 21 N 1.34777 * 119.99928 * 179.72353 * 19 18 2 22 22 C 1.37101 * 120.00327 * 180.27606 * 21 19 18 23 23 H 1.08001 * 119.99426 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00412 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00005 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47191 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46534 * 120.00189 * 26 24 22 29 29 H 1.48498 * 109.47283 * 240.00132 * 26 24 22 30 30 H 1.09000 * 109.47177 * 183.95141 * 1 2 3 31 31 H 1.09001 * 109.46926 * 303.95384 * 1 2 3 32 32 H 1.09005 * 109.47416 * 63.94774 * 1 2 3 33 33 H 1.08993 * 109.47118 * 186.05055 * 3 2 1 34 34 H 1.08997 * 109.47027 * 306.05187 * 3 2 1 35 35 H 1.09001 * 109.47532 * 299.99814 * 4 3 2 36 36 H 1.08997 * 109.47010 * 60.00549 * 4 3 2 37 37 H 0.97005 * 120.00391 * 0.02562 * 5 4 3 38 38 H 1.09009 * 111.12476 * 325.59683 * 10 8 6 39 39 H 1.08997 * 111.12671 * 89.71340 * 10 8 6 40 40 H 1.08999 * 110.30831 * 155.36195 * 11 10 8 41 41 H 1.09001 * 110.30783 * 277.43193 * 11 10 8 42 42 H 1.09003 * 115.54763 * 152.37319 * 15 13 12 43 43 H 1.09002 * 117.50012 * 0.02562 * 16 15 13 44 44 H 1.09003 * 117.49872 * 145.02206 * 16 15 13 45 45 H 1.09002 * 117.49708 * 214.97868 * 17 15 13 46 46 H 1.09002 * 117.50119 * 359.97438 * 17 15 13 47 47 H 1.09004 * 109.47131 * 173.95472 * 18 2 1 48 48 H 1.09000 * 109.47732 * 53.95583 * 18 2 1 49 49 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 50 50 H 0.96996 * 120.00330 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1561 3.4252 1.3181 6 6 1.9556 4.2240 2.3850 7 8 1.3405 3.8105 3.3450 8 6 2.4957 5.6309 2.3850 9 1 2.0833 6.2029 1.5538 10 6 4.0479 5.6271 2.3371 11 6 4.3676 6.9651 3.0501 12 8 3.3753 7.0867 4.0816 13 6 2.2063 6.3304 3.7305 14 1 2.0046 5.5845 4.4992 15 6 1.0029 7.2637 3.5821 16 6 1.2623 8.7693 3.6640 17 6 0.5620 8.0497 4.8183 18 6 1.9953 -0.7659 -1.1377 19 6 1.6368 -2.2204 -0.9730 20 8 1.0045 -2.5832 -0.0035 21 7 2.0134 -3.1171 -1.9060 22 6 1.6824 -4.4394 -1.7591 23 1 1.1194 -4.7624 -0.8958 24 6 2.0711 -5.3640 -2.7206 25 7 2.7565 -4.9710 -3.7708 26 14 1.6206 -7.1657 -2.5200 27 1 0.8535 -7.3470 -1.2615 28 1 0.7902 -7.5995 -3.6723 29 1 2.8595 -7.9828 -2.4672 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5740 0.8525 32 1 -0.3634 0.4514 -0.9233 33 1 3.0797 1.3443 -0.1083 34 1 1.5612 1.9274 -0.8308 35 1 0.5473 2.0844 1.4266 36 1 2.0659 1.5014 2.1491 37 1 2.6478 3.7560 0.5501 38 1 4.4559 4.7804 2.8893 39 1 4.4092 5.6330 1.3087 40 1 5.3656 6.9318 3.4871 41 1 4.2899 7.7956 2.3485 42 1 0.2254 6.9230 2.8984 43 1 2.2903 9.0950 3.8231 44 1 0.6553 9.4195 3.0340 45 1 -0.5058 8.2266 4.9478 46 1 1.1288 7.9018 5.7375 47 1 3.0796 -0.6611 -1.1758 48 1 1.5610 -0.3872 -2.0629 49 1 2.5188 -2.8270 -2.6815 50 1 3.0282 -5.6165 -4.4419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480893645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:27 Heat of formation + Delta-G solvation = -109.431793 kcal Electronic energy + Delta-G solvation = -28937.082928 eV Core-core repulsion = 24771.260918 eV Total energy + Delta-G solvation = -4165.822010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64193 -40.41475 -39.83608 -38.16304 -37.25643 -36.02945 -35.53711 -33.53861 -33.26321 -30.67165 -30.21087 -29.07494 -27.07782 -25.85379 -24.52473 -23.49346 -23.19451 -22.33967 -21.37771 -20.98289 -20.86705 -19.84972 -18.71727 -17.86621 -17.72821 -17.22230 -16.88223 -16.62055 -16.41130 -16.34216 -16.16841 -15.86489 -15.60948 -15.44574 -15.05456 -14.94958 -14.62569 -14.29381 -14.23240 -13.77282 -13.69118 -13.45338 -13.15974 -13.03751 -12.93990 -12.59660 -12.56788 -12.49603 -12.39110 -12.38722 -12.24806 -12.15514 -12.09271 -12.02384 -11.46039 -11.20075 -11.08958 -10.90602 -10.45621 -10.28774 -10.15221 -9.98459 -9.23501 -8.45873 -5.93929 1.36736 1.42269 1.51883 1.55940 1.91177 2.07492 2.30389 2.73909 2.84899 2.93148 3.21313 3.39567 3.43179 3.56790 3.65589 3.84804 3.98973 4.05843 4.08168 4.12635 4.22694 4.25489 4.26519 4.37133 4.41375 4.46110 4.53491 4.58912 4.63178 4.64858 4.80375 4.82916 4.84318 4.88481 4.95072 4.96021 5.03635 5.11384 5.21034 5.21787 5.33180 5.34464 5.42697 5.85542 6.03159 6.05157 6.17410 6.47992 6.62667 7.15089 7.17799 7.58690 8.15293 8.71656 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033256 B = 0.001571 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.757251 B =17824.173847 C =18225.064716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.129 3.871 5 N -0.708 5.708 6 C 0.522 3.478 7 O -0.582 6.582 8 C -0.128 4.128 9 H 0.141 0.859 10 C -0.139 4.139 11 C 0.046 3.954 12 O -0.393 6.393 13 C 0.124 3.876 14 H 0.069 0.931 15 C -0.178 4.178 16 C -0.153 4.153 17 C -0.183 4.183 18 C 0.061 3.939 19 C 0.439 3.561 20 O -0.617 6.617 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.991 3.009 27 H -0.276 1.276 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.419 0.581 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.074 0.926 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.999 29.881 4.655 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.075 4.075 4 C 0.004 3.996 5 N -0.360 5.360 6 C 0.308 3.692 7 O -0.461 6.461 8 C -0.150 4.150 9 H 0.159 0.841 10 C -0.177 4.177 11 C -0.030 4.030 12 O -0.313 6.313 13 C 0.066 3.934 14 H 0.087 0.913 15 C -0.197 4.197 16 C -0.190 4.190 17 C -0.220 4.220 18 C -0.070 4.070 19 C 0.227 3.773 20 O -0.503 6.503 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.257 0.743 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.091 0.909 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.402 29.114 6.419 30.007 hybrid contribution -0.285 -0.882 -1.315 1.609 sum 3.117 28.232 5.104 28.858 Atomic orbital electron populations 1.22471 0.86956 1.02534 1.00436 1.61326 1.08854 1.13261 1.43082 1.22244 1.01939 0.87334 0.95964 1.21110 0.98727 0.81604 0.98154 1.45689 1.57364 1.13134 1.19859 1.20666 0.78838 0.87769 0.81878 1.90735 1.42884 1.76535 1.35966 1.22841 0.98870 0.92371 1.00871 0.84116 1.23323 0.90869 0.98795 1.04710 1.23594 0.92595 0.96736 0.90096 1.88474 1.25981 1.71742 1.45058 1.21987 0.85026 0.91265 0.95138 0.91286 1.22698 0.99692 0.94276 1.03001 1.22914 1.02255 0.92710 1.01090 1.22939 1.01121 1.04824 0.93129 1.21744 1.02396 0.89828 0.93031 1.20862 0.83705 0.88963 0.83820 1.90478 1.45144 1.81492 1.33152 1.41924 1.50153 1.07069 1.22066 1.19673 1.34268 0.84276 1.07910 0.90517 1.25979 0.96333 1.04117 0.94717 1.69666 1.38219 1.37052 1.11135 0.84905 0.78231 0.77220 0.78180 1.20028 1.19614 1.19638 0.92610 0.90782 0.94702 0.88152 0.91895 0.92455 0.92799 0.74304 0.90966 0.85453 0.88473 0.89860 0.86971 0.88151 0.87601 0.88149 0.89711 0.86624 0.90860 0.76929 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.01 127.69 1.15 1.90 16 2 N -0.54 -16.31 4.50 -927.04 -4.17 -20.48 16 3 C 0.05 1.02 5.07 86.30 0.44 1.46 16 4 C 0.13 2.73 5.61 86.38 0.48 3.22 16 5 N -0.71 -10.49 5.54 -463.06 -2.57 -13.05 16 6 C 0.52 10.13 7.15 87.66 0.63 10.75 16 7 O -0.58 -17.54 15.44 -3.04 -0.05 -17.59 16 8 C -0.13 -1.59 2.89 -10.28 -0.03 -1.62 16 9 H 0.14 1.00 7.85 -2.39 -0.02 0.98 16 10 C -0.14 -1.11 6.60 32.05 0.21 -0.90 16 11 C 0.05 0.43 7.78 72.65 0.56 0.99 16 12 O -0.39 -6.80 9.44 -148.98 -1.41 -8.20 16 13 C 0.12 2.23 3.33 31.07 0.10 2.33 16 14 H 0.07 1.74 6.82 -2.39 -0.02 1.72 16 15 C -0.18 -2.86 5.56 -10.79 -0.06 -2.92 16 16 C -0.15 -2.00 9.88 30.59 0.30 -1.70 16 17 C -0.18 -2.94 10.22 30.59 0.31 -2.63 16 18 C 0.06 1.95 5.45 85.56 0.47 2.42 16 19 C 0.44 20.44 7.51 87.66 0.66 21.10 16 20 O -0.62 -33.90 13.88 -3.07 -0.04 -33.95 16 21 N -0.57 -28.91 5.29 -306.98 -1.62 -30.54 16 22 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 25 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 26 Si 0.99 42.83 29.55 68.60 2.03 44.85 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 30 H 0.06 2.25 5.88 -2.39 -0.01 2.23 16 31 H 0.07 2.09 6.30 -2.39 -0.02 2.08 16 32 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.10 1.56 7.93 -2.39 -0.02 1.54 16 34 H 0.06 0.94 8.12 -2.39 -0.02 0.93 16 35 H 0.06 1.40 6.47 -2.39 -0.02 1.38 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.42 2.87 8.47 -92.70 -0.79 2.08 16 38 H 0.07 0.81 8.03 -2.38 -0.02 0.79 16 39 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.11 1.71 8.12 -2.39 -0.02 1.69 16 43 H 0.10 1.39 7.07 -2.39 -0.02 1.37 16 44 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.12 3.11 7.93 -2.38 -0.02 3.09 16 48 H 0.07 2.02 8.12 -2.39 -0.02 2.01 16 49 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 50 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -76.99 404.87 -1.59 -78.58 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.56 Total: 32.65 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 6.51 Total: 16.34 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -8.08 Total: -112.69 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -1.50 Total: -59.74 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.99 -1.59 -78.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480893645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.850 kcal (2) G-P(sol) polarization free energy of solvation -76.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds