Wall clock time and date at job start Sat Apr 11 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00200 * 2 1 4 4 C 1.53781 * 113.61168 * 249.13450 * 3 2 1 5 5 C 1.53961 * 87.01950 * 220.04290 * 4 3 2 6 6 C 1.50695 * 113.61494 * 270.80163 * 5 4 3 7 7 O 1.21280 * 120.00030 * 97.53097 * 6 5 4 8 8 N 1.34774 * 120.00021 * 277.52862 * 6 5 4 9 9 C 1.46502 * 119.99906 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46822 * 174.99220 * 9 8 6 11 11 H 1.09003 * 110.36731 * 57.23147 * 10 9 8 12 12 C 1.54374 * 110.41330 * 294.88009 * 10 9 8 13 13 C 1.54264 * 105.06299 * 217.37045 * 12 10 9 14 14 C 1.54384 * 105.05650 * 359.97438 * 13 12 10 15 15 N 1.48553 * 104.59711 * 23.85176 * 14 13 12 16 16 C 1.46893 * 111.00127 * 200.96189 * 15 14 13 17 17 C 1.50702 * 109.47450 * 279.55122 * 16 15 14 18 18 O 1.21303 * 119.99445 * 359.97438 * 17 16 15 19 19 N 1.34766 * 120.00587 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00221 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00213 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00214 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00204 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99880 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47300 * 90.00010 * 24 22 20 26 26 H 1.48503 * 109.47380 * 209.99464 * 24 22 20 27 27 H 1.48495 * 109.47197 * 329.99786 * 24 22 20 28 28 C 1.53774 * 113.61815 * 151.52634 * 3 2 1 29 29 H 1.09000 * 109.47375 * 300.00739 * 1 2 3 30 30 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46728 * 60.00482 * 1 2 3 32 32 H 1.09005 * 112.85019 * 20.32422 * 3 2 1 33 33 H 1.08998 * 113.61472 * 334.56363 * 4 3 2 34 34 H 1.09002 * 113.61402 * 105.47270 * 4 3 2 35 35 H 1.08997 * 113.66368 * 139.92967 * 5 4 3 36 36 H 0.97001 * 120.00078 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47112 * 294.98754 * 9 8 6 38 38 H 1.08995 * 109.47152 * 54.99514 * 9 8 6 39 39 H 1.09003 * 110.32048 * 336.26548 * 12 10 9 40 40 H 1.09001 * 110.32727 * 98.47154 * 12 10 9 41 41 H 1.08997 * 110.32410 * 118.89488 * 13 12 10 42 42 H 1.08997 * 110.32328 * 241.10598 * 13 12 10 43 43 H 1.08998 * 110.41093 * 142.63216 * 14 13 12 44 44 H 1.08999 * 110.40788 * 264.95730 * 14 13 12 45 45 H 1.09001 * 109.47602 * 39.54978 * 16 15 14 46 46 H 1.09007 * 109.47554 * 159.55368 * 16 15 14 47 47 H 0.96997 * 120.00096 * 0.02562 * 19 17 16 48 48 H 0.97006 * 120.00005 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.61411 * 254.53214 * 28 3 2 50 50 H 1.08998 * 113.61444 * 25.34701 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7193 1.6639 -1.3167 5 6 3.8121 2.3229 -0.4552 6 6 3.5440 3.7731 -0.1455 7 8 3.0415 4.0841 0.9136 8 7 3.8626 4.7244 -1.0454 9 6 3.6025 6.1343 -0.7441 10 6 4.1661 7.0081 -1.8665 11 1 3.7315 6.7222 -2.8244 12 6 5.7047 6.8930 -1.9175 13 6 6.2014 8.3110 -2.2672 14 6 4.9210 9.1634 -2.3988 15 7 3.9069 8.4436 -1.5862 16 6 2.5455 8.8212 -1.9882 17 6 2.1803 10.1373 -1.3512 18 8 2.9760 10.7046 -0.6325 19 7 0.9699 10.6840 -1.5800 20 6 0.6377 11.8809 -1.0001 21 1 1.3460 12.3861 -0.3602 22 6 -0.6101 12.4448 -1.2364 23 7 -0.9284 13.5924 -0.6809 24 14 -1.8351 11.5716 -2.3437 25 1 -2.6772 10.6598 -1.5282 26 1 -2.6993 12.5757 -3.0147 27 1 -1.1028 10.7849 -3.3684 28 6 3.3923 1.3644 0.6717 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.3219 2.0753 0.3489 33 1 3.0682 0.7954 -1.8753 34 1 2.1635 2.3701 -1.9336 35 1 4.8233 2.1484 -0.8227 36 1 4.2642 4.4756 -1.8926 37 1 2.5276 6.2961 -0.6626 38 1 4.0823 6.3990 0.1981 39 1 6.0936 6.5843 -0.9471 40 1 6.0061 6.1851 -2.6896 41 1 6.8341 8.6982 -1.4685 42 1 6.7465 8.2991 -3.2110 43 1 5.0876 10.1638 -1.9995 44 1 4.6063 9.2183 -3.4409 45 1 2.5005 8.9178 -3.0730 46 1 1.8440 8.0530 -1.6624 47 1 0.3335 10.2302 -2.1544 48 1 -1.7997 13.9859 -0.8456 49 1 3.3790 1.8290 1.6577 50 1 3.9249 0.4135 0.6590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481044674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:30 Heat of formation + Delta-G solvation = -81.977397 kcal Electronic energy + Delta-G solvation = -29625.501629 eV Core-core repulsion = 25460.870131 eV Total energy + Delta-G solvation = -4164.631498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.88931 -39.56828 -38.52555 -37.77024 -36.05381 -34.88215 -33.93512 -32.17103 -31.56102 -30.25462 -27.60561 -26.96535 -26.13817 -26.05835 -24.50083 -23.89333 -21.80154 -21.10315 -20.45798 -19.47771 -19.32610 -18.31723 -17.76511 -16.79161 -16.44486 -16.08478 -15.87451 -15.85391 -15.46382 -15.15071 -14.95304 -14.78506 -14.58183 -14.24040 -13.80881 -13.50403 -13.40002 -13.08656 -12.88131 -12.82631 -12.71255 -12.50818 -12.39019 -12.28292 -11.96339 -11.75827 -11.52989 -11.33558 -11.26001 -11.20524 -11.07197 -10.98884 -10.90267 -10.59456 -10.55606 -10.03256 -9.96214 -9.83384 -9.54279 -9.25581 -8.69086 -8.17645 -8.14046 -6.29290 -3.80496 2.36062 2.80862 3.02061 3.07247 3.15155 3.45333 3.75261 3.92484 4.05377 4.11303 4.14575 4.34113 4.40835 4.43978 4.53282 4.78029 4.80011 4.94291 4.98330 5.05227 5.05944 5.08150 5.12409 5.22010 5.29981 5.32929 5.34669 5.36166 5.53022 5.54923 5.60947 5.62723 5.65913 5.72226 5.74870 5.78917 5.86215 5.92692 6.01302 6.11367 6.19438 6.27288 6.86124 6.94743 7.02774 7.24802 7.59993 7.99635 8.16321 8.62408 8.97545 9.44427 9.86119 10.83992 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.002532 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.147904 B =11057.337385 C =13174.568837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.379 6.379 3 C 0.061 3.939 4 C -0.140 4.140 5 C -0.139 4.139 6 C 0.527 3.473 7 O -0.532 6.532 8 N -0.724 5.724 9 C 0.132 3.868 10 C 0.048 3.952 11 H 0.055 0.945 12 C -0.118 4.118 13 C -0.123 4.123 14 C 0.039 3.961 15 N -0.474 5.474 16 C 0.030 3.970 17 C 0.455 3.545 18 O -0.555 6.555 19 N -0.594 5.594 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 C -0.115 4.115 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.040 0.960 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.088 0.912 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 -26.916 -7.412 29.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.003 3.997 4 C -0.178 4.178 5 C -0.160 4.160 6 C 0.313 3.687 7 O -0.408 6.408 8 N -0.376 5.376 9 C 0.008 3.992 10 C -0.061 4.061 11 H 0.073 0.927 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.089 4.089 15 N -0.199 5.199 16 C -0.102 4.102 17 C 0.241 3.759 18 O -0.436 6.436 19 N -0.234 5.234 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.153 4.153 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.233 0.767 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.429 -26.119 -5.530 28.315 hybrid contribution -1.373 -0.496 -2.302 2.726 sum 8.056 -26.616 -7.833 28.890 Atomic orbital electron populations 1.22799 0.81086 1.02678 1.00210 1.87908 1.19784 1.27452 1.94569 1.23823 0.94544 0.85388 0.95948 1.23491 0.96262 1.00703 0.97308 1.22228 1.01500 0.91729 1.00569 1.20050 0.77956 0.86871 0.83834 1.90745 1.42790 1.82904 1.24346 1.45887 1.64387 1.06924 1.20422 1.21263 1.01064 0.78130 0.98748 1.22829 0.96243 0.90569 0.96472 0.92678 1.22345 0.93662 0.97427 1.02136 1.22291 0.97563 0.94623 1.01638 1.23158 0.90949 0.99682 0.95104 1.64885 1.01910 1.01042 1.52021 1.22146 0.91488 0.98266 0.98343 1.19560 0.83256 0.87048 0.86080 1.90566 1.49795 1.63351 1.39884 1.42203 1.14065 1.21794 1.45322 1.19419 1.01228 0.95730 1.26753 0.86277 1.25027 0.97209 0.96098 0.97872 1.69622 1.22210 1.17017 1.43417 0.86682 0.81975 0.79912 0.80857 1.19619 1.20217 1.19623 1.23077 0.94835 0.98664 0.98713 0.93800 0.89688 0.94030 0.88933 0.88094 0.90817 0.87293 0.76713 0.91404 0.89826 0.90671 0.91525 0.90763 0.91523 0.88616 0.94165 0.92784 0.89388 0.79840 0.91657 0.89315 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.30 16 2 O -0.38 -3.58 10.71 -35.23 -0.38 -3.95 16 3 C 0.06 0.54 3.95 -25.92 -0.10 0.44 16 4 C -0.14 -0.95 7.51 -25.82 -0.19 -1.14 16 5 C -0.14 -1.01 4.35 -90.87 -0.39 -1.40 16 6 C 0.53 5.54 7.09 -10.99 -0.08 5.46 16 7 O -0.53 -7.99 15.75 5.56 0.09 -7.91 16 8 N -0.72 -6.36 5.35 -60.30 -0.32 -6.68 16 9 C 0.13 1.54 5.22 -4.04 -0.02 1.52 16 10 C 0.05 0.53 2.32 -66.08 -0.15 0.37 16 11 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 12 C -0.12 -1.08 6.22 -25.35 -0.16 -1.23 16 13 C -0.12 -1.29 7.00 -25.34 -0.18 -1.47 16 14 C 0.04 0.54 6.08 -2.18 -0.01 0.53 16 15 N -0.47 -7.24 4.56 -223.59 -1.02 -8.26 16 16 C 0.03 0.49 5.31 -4.98 -0.03 0.46 16 17 C 0.46 10.38 7.69 -10.99 -0.08 10.29 16 18 O -0.56 -14.98 15.30 5.54 0.08 -14.90 16 19 N -0.59 -14.24 5.09 -10.96 -0.06 -14.30 16 20 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.99 13.96 55.50 0.77 -25.21 16 24 Si 0.88 19.50 27.74 -169.99 -4.71 14.79 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 C -0.12 -0.96 7.29 -25.92 -0.19 -1.15 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.94 7.82 -51.93 -0.41 0.53 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.40 2.28 8.36 -40.82 -0.34 1.94 16 37 H 0.07 0.90 7.26 -51.93 -0.38 0.53 16 38 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.62 7.66 -51.93 -0.40 1.22 16 44 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 45 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 46 H 0.09 1.29 7.07 -51.93 -0.37 0.93 16 47 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.09 0.88 7.43 -51.93 -0.39 0.50 16 50 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -35.55 403.35 -8.53 -44.09 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.33 Total: 10.02 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.74 Total: 6.23 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.62 Total: -54.45 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.21 Total: -26.75 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.55 -8.53 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481044674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.890 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds