Wall clock time and date at job start Sat Apr 11 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00200 * 2 1 4 4 C 1.53781 * 113.61168 * 249.13450 * 3 2 1 5 5 C 1.53961 * 87.01950 * 220.04290 * 4 3 2 6 6 C 1.50695 * 113.61494 * 270.80163 * 5 4 3 7 7 O 1.21280 * 120.00030 * 97.53097 * 6 5 4 8 8 N 1.34774 * 120.00021 * 277.52862 * 6 5 4 9 9 C 1.46502 * 119.99906 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46822 * 174.99220 * 9 8 6 11 11 H 1.09003 * 110.36731 * 57.23147 * 10 9 8 12 12 C 1.54374 * 110.41330 * 294.88009 * 10 9 8 13 13 C 1.54264 * 105.06299 * 217.37045 * 12 10 9 14 14 C 1.54384 * 105.05650 * 359.97438 * 13 12 10 15 15 N 1.48553 * 104.59711 * 23.85176 * 14 13 12 16 16 C 1.46893 * 111.00127 * 200.96189 * 15 14 13 17 17 C 1.50702 * 109.47450 * 279.55122 * 16 15 14 18 18 O 1.21303 * 119.99445 * 359.97438 * 17 16 15 19 19 N 1.34766 * 120.00587 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00221 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00213 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00214 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00204 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99880 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47300 * 90.00010 * 24 22 20 26 26 H 1.48503 * 109.47380 * 209.99464 * 24 22 20 27 27 H 1.48495 * 109.47197 * 329.99786 * 24 22 20 28 28 C 1.53774 * 113.61815 * 151.52634 * 3 2 1 29 29 H 1.09000 * 109.47375 * 300.00739 * 1 2 3 30 30 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46728 * 60.00482 * 1 2 3 32 32 H 1.09005 * 112.85019 * 20.32422 * 3 2 1 33 33 H 1.08998 * 113.61472 * 334.56363 * 4 3 2 34 34 H 1.09002 * 113.61402 * 105.47270 * 4 3 2 35 35 H 1.08997 * 113.66368 * 139.92967 * 5 4 3 36 36 H 0.97001 * 120.00078 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47112 * 294.98754 * 9 8 6 38 38 H 1.08995 * 109.47152 * 54.99514 * 9 8 6 39 39 H 1.09003 * 110.32048 * 336.26548 * 12 10 9 40 40 H 1.09001 * 110.32727 * 98.47154 * 12 10 9 41 41 H 1.08997 * 110.32410 * 118.89488 * 13 12 10 42 42 H 1.08997 * 110.32328 * 241.10598 * 13 12 10 43 43 H 1.08998 * 110.41093 * 142.63216 * 14 13 12 44 44 H 1.08999 * 110.40788 * 264.95730 * 14 13 12 45 45 H 1.09001 * 109.47602 * 39.54978 * 16 15 14 46 46 H 1.09007 * 109.47554 * 159.55368 * 16 15 14 47 47 H 0.96997 * 120.00096 * 0.02562 * 19 17 16 48 48 H 0.97006 * 120.00005 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.61411 * 254.53214 * 28 3 2 50 50 H 1.08998 * 113.61444 * 25.34701 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7193 1.6639 -1.3167 5 6 3.8121 2.3229 -0.4552 6 6 3.5440 3.7731 -0.1455 7 8 3.0415 4.0841 0.9136 8 7 3.8626 4.7244 -1.0454 9 6 3.6025 6.1343 -0.7441 10 6 4.1661 7.0081 -1.8665 11 1 3.7315 6.7222 -2.8244 12 6 5.7047 6.8930 -1.9175 13 6 6.2014 8.3110 -2.2672 14 6 4.9210 9.1634 -2.3988 15 7 3.9069 8.4436 -1.5862 16 6 2.5455 8.8212 -1.9882 17 6 2.1803 10.1373 -1.3512 18 8 2.9760 10.7046 -0.6325 19 7 0.9699 10.6840 -1.5800 20 6 0.6377 11.8809 -1.0001 21 1 1.3460 12.3861 -0.3602 22 6 -0.6101 12.4448 -1.2364 23 7 -0.9284 13.5924 -0.6809 24 14 -1.8351 11.5716 -2.3437 25 1 -2.6772 10.6598 -1.5282 26 1 -2.6993 12.5757 -3.0147 27 1 -1.1028 10.7849 -3.3684 28 6 3.3923 1.3644 0.6717 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.3219 2.0753 0.3489 33 1 3.0682 0.7954 -1.8753 34 1 2.1635 2.3701 -1.9336 35 1 4.8233 2.1484 -0.8227 36 1 4.2642 4.4756 -1.8926 37 1 2.5276 6.2961 -0.6626 38 1 4.0823 6.3990 0.1981 39 1 6.0936 6.5843 -0.9471 40 1 6.0061 6.1851 -2.6896 41 1 6.8341 8.6982 -1.4685 42 1 6.7465 8.2991 -3.2110 43 1 5.0876 10.1638 -1.9995 44 1 4.6063 9.2183 -3.4409 45 1 2.5005 8.9178 -3.0730 46 1 1.8440 8.0530 -1.6624 47 1 0.3335 10.2302 -2.1544 48 1 -1.7997 13.9859 -0.8456 49 1 3.3790 1.8290 1.6577 50 1 3.9249 0.4135 0.6590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481044674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:30 Heat of formation + Delta-G solvation = -111.659771 kcal Electronic energy + Delta-G solvation = -29626.788753 eV Core-core repulsion = 25460.870131 eV Total energy + Delta-G solvation = -4165.918622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64438 -40.77300 -39.63102 -39.06273 -36.71250 -36.05283 -35.73440 -33.81086 -33.15139 -31.15673 -28.48754 -28.22731 -26.85412 -26.69365 -25.90350 -25.06207 -22.58919 -22.14459 -21.34267 -21.22453 -20.30111 -20.15085 -18.41805 -17.78111 -17.40328 -17.32743 -16.98737 -16.68070 -16.57874 -16.25264 -16.05202 -15.97302 -15.77506 -15.24922 -15.14804 -14.68845 -14.58112 -14.33014 -14.21423 -14.01623 -13.67491 -13.43283 -13.33806 -13.11967 -13.03494 -12.95755 -12.87414 -12.44145 -12.30014 -12.16545 -12.12924 -11.99586 -11.89138 -11.80690 -11.53009 -11.51880 -11.36066 -10.87341 -10.45634 -10.44762 -10.25315 -10.12762 -9.39414 -8.42257 -6.03061 1.27319 1.34125 1.42425 1.56359 1.95731 1.99518 2.21638 2.70143 2.86961 3.13034 3.26103 3.44640 3.54536 3.57816 3.66365 3.75388 3.85780 4.00045 4.10643 4.15255 4.20258 4.29920 4.33411 4.40089 4.47249 4.50789 4.51057 4.53376 4.68891 4.78625 4.79473 4.82465 4.87315 4.97572 5.01619 5.03073 5.04902 5.06955 5.17218 5.24677 5.31010 5.37321 5.52014 5.87273 5.93891 6.02847 6.24526 6.55701 6.59244 6.87986 7.25973 7.39247 7.97656 8.75676 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.002532 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.147904 B =11057.337385 C =13174.568837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.049 3.951 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.523 3.477 7 O -0.586 6.586 8 N -0.704 5.704 9 C 0.139 3.861 10 C 0.057 3.943 11 H 0.088 0.912 12 C -0.110 4.110 13 C -0.117 4.117 14 C 0.036 3.964 15 N -0.512 5.512 16 C 0.044 3.956 17 C 0.452 3.548 18 O -0.607 6.607 19 N -0.594 5.594 20 C -0.327 4.327 21 H 0.053 0.947 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.230 1.230 28 C -0.119 4.119 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.420 0.580 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.062 0.938 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.424 -31.081 -11.687 34.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C -0.009 4.009 4 C -0.160 4.160 5 C -0.147 4.147 6 C 0.310 3.690 7 O -0.466 6.466 8 N -0.357 5.357 9 C 0.014 3.986 10 C -0.051 4.051 11 H 0.106 0.894 12 C -0.148 4.148 13 C -0.155 4.155 14 C -0.092 4.092 15 N -0.237 5.237 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.491 6.491 19 N -0.237 5.237 20 C -0.456 4.456 21 H 0.071 0.929 22 C -0.215 4.215 23 N -0.577 5.577 24 Si 0.785 3.215 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.153 1.153 28 C -0.157 4.157 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.129 0.871 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.621 -30.320 -9.856 33.302 hybrid contribution -1.336 0.867 -0.815 1.789 sum 8.285 -29.453 -10.672 32.404 Atomic orbital electron populations 1.22935 0.80192 1.03801 1.00329 1.87873 1.20867 1.27672 1.94769 1.23897 0.94399 0.84770 0.97867 1.23442 0.95193 1.01245 0.96144 1.22171 1.03613 0.88800 1.00104 1.20702 0.76791 0.88399 0.83072 1.90734 1.45240 1.83869 1.26766 1.45643 1.63660 1.05361 1.21002 1.20995 0.99607 0.79979 0.98018 1.22854 0.97759 0.87390 0.97121 0.89377 1.22370 0.91909 0.97290 1.03206 1.22267 0.95803 0.94682 1.02727 1.23116 0.92633 0.98118 0.95338 1.64719 1.01396 1.03975 1.53589 1.22014 0.92939 0.94337 0.99506 1.20929 0.81935 0.88629 0.84582 1.90545 1.51239 1.65338 1.41955 1.42038 1.15184 1.20649 1.45798 1.18980 1.01040 0.97908 1.27678 0.92885 1.26129 0.99221 0.96728 0.99443 1.69811 1.23311 1.19264 1.45282 0.85361 0.78292 0.78907 0.78928 1.18378 1.19860 1.15273 1.23128 0.95098 0.99582 0.97884 0.94349 0.88093 0.93298 0.91213 0.86027 0.90264 0.83654 0.74230 0.93251 0.93117 0.91534 0.87264 0.92236 0.88584 0.93241 0.92358 0.89301 0.87080 0.77588 0.91166 0.91913 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.39 -6.90 10.71 -148.98 -1.60 -8.50 16 3 C 0.05 0.81 3.95 31.12 0.12 0.93 16 4 C -0.12 -1.25 7.51 31.18 0.23 -1.01 16 5 C -0.13 -1.45 4.35 -10.95 -0.05 -1.50 16 6 C 0.52 10.17 7.09 87.66 0.62 10.79 16 7 O -0.59 -18.03 15.75 -3.03 -0.05 -18.08 16 8 N -0.70 -10.31 5.35 -463.07 -2.48 -12.79 16 9 C 0.14 3.04 5.22 86.38 0.45 3.49 16 10 C 0.06 1.06 2.32 45.07 0.10 1.16 16 11 H 0.09 1.14 8.00 -2.39 -0.02 1.12 16 12 C -0.11 -1.59 6.22 31.49 0.20 -1.39 16 13 C -0.12 -2.16 7.00 31.49 0.22 -1.94 16 14 C 0.04 0.96 6.08 86.45 0.53 1.48 16 15 N -0.51 -15.00 4.56 -861.31 -3.92 -18.93 16 16 C 0.04 1.35 5.31 85.56 0.45 1.80 16 17 C 0.45 20.99 7.69 87.66 0.67 21.66 16 18 O -0.61 -34.87 15.30 -3.10 -0.05 -34.91 16 19 N -0.59 -28.72 5.09 -306.99 -1.56 -30.29 16 20 C -0.33 -19.59 10.16 84.04 0.85 -18.74 16 21 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 23 N -0.94 -57.46 13.96 21.66 0.30 -57.16 16 24 Si 0.97 39.37 27.74 68.60 1.90 41.27 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 28 C -0.12 -1.84 7.29 31.12 0.23 -1.61 16 29 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 1.45 7.82 -2.38 -0.02 1.43 16 33 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.75 8.10 -2.39 -0.02 0.73 16 35 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.42 2.68 8.36 -92.71 -0.78 1.91 16 37 H 0.05 1.27 7.26 -2.39 -0.02 1.25 16 38 H 0.05 1.45 8.08 -2.39 -0.02 1.44 16 39 H 0.07 1.11 7.82 -2.39 -0.02 1.09 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.76 7.66 -2.39 -0.02 1.74 16 44 H 0.06 1.33 7.68 -2.39 -0.02 1.31 16 45 H 0.09 2.17 7.64 -2.39 -0.02 2.15 16 46 H 0.11 2.94 7.07 -2.38 -0.02 2.92 16 47 H 0.39 15.48 5.76 -92.71 -0.53 14.94 16 48 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 49 H 0.06 1.30 7.43 -2.38 -0.02 1.28 16 50 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -88.58 403.35 -1.53 -90.11 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.42 Total: 33.09 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.33 Total: 16.18 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -7.66 Total: -119.15 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: -1.69 Total: -61.49 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.90 Total: 41.27 kcal Total: -88.58 -1.53 -90.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481044674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.552 kcal (2) G-P(sol) polarization free energy of solvation -88.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds