Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99519 * 2 1 4 4 C 1.53007 * 109.46851 * 184.94420 * 3 2 1 5 5 C 1.50704 * 115.54610 * 294.53261 * 4 3 2 6 6 O 1.21272 * 120.00030 * 237.92649 * 5 4 3 7 7 N 1.34774 * 119.99935 * 57.93475 * 5 4 3 8 8 C 1.46496 * 120.00025 * 187.19273 * 7 5 4 9 9 C 1.53003 * 109.46838 * 273.01866 * 8 7 5 10 10 H 1.08993 * 110.42465 * 67.15557 * 9 8 7 11 11 C 1.54913 * 110.37138 * 189.46906 * 9 8 7 12 12 C 1.55148 * 101.64872 * 155.89770 * 11 9 8 13 13 C 1.54315 * 103.02256 * 324.34596 * 12 11 9 14 14 N 1.47449 * 107.23053 * 22.28479 * 13 12 11 15 15 C 1.46898 * 111.00028 * 123.25630 * 14 13 12 16 16 C 1.50705 * 109.46862 * 75.82311 * 15 14 13 17 17 O 1.21294 * 120.00229 * 5.48866 * 16 15 14 18 18 N 1.34783 * 119.99675 * 185.48021 * 16 15 14 19 19 C 1.37101 * 119.99689 * 175.17757 * 18 16 15 20 20 H 1.08003 * 120.00076 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99922 * 179.72958 * 19 18 16 22 22 N 1.31414 * 119.99754 * 0.27164 * 21 19 18 23 23 Si 1.86794 * 120.00090 * 180.27377 * 21 19 18 24 24 H 1.48506 * 109.47046 * 59.99534 * 23 21 19 25 25 H 1.48498 * 109.47474 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47038 * 300.00103 * 23 21 19 27 27 C 1.52989 * 117.51987 * 80.23601 * 4 3 2 28 28 C 1.52996 * 117.49850 * 148.86945 * 4 3 2 29 29 H 1.08999 * 109.46936 * 64.95515 * 1 2 3 30 30 H 1.09005 * 109.46784 * 184.95398 * 1 2 3 31 31 H 1.08998 * 109.47377 * 304.94987 * 1 2 3 32 32 H 1.09000 * 109.47327 * 64.94185 * 3 2 1 33 33 H 1.09003 * 109.47007 * 304.93591 * 3 2 1 34 34 H 0.97007 * 120.00207 * 7.18204 * 7 5 4 35 35 H 1.09003 * 109.47365 * 153.02243 * 8 7 5 36 36 H 1.09001 * 109.47529 * 33.01513 * 8 7 5 37 37 H 1.08994 * 110.99014 * 37.81335 * 11 9 8 38 38 H 1.08994 * 110.99086 * 273.99065 * 11 9 8 39 39 H 1.09003 * 110.70187 * 205.96089 * 12 11 9 40 40 H 1.09002 * 110.85257 * 82.80087 * 12 11 9 41 41 H 1.08993 * 109.88895 * 262.88200 * 13 12 11 42 42 H 1.09003 * 110.02040 * 141.76172 * 13 12 11 43 43 H 1.09002 * 109.47158 * 315.82956 * 15 14 13 44 44 H 1.08996 * 109.47311 * 195.82804 * 15 14 13 45 45 H 0.97001 * 120.00199 * 355.17797 * 18 16 15 46 46 H 0.97003 * 119.99570 * 179.97438 * 22 21 19 47 47 H 1.09004 * 117.50274 * 214.97205 * 27 4 3 48 48 H 1.09002 * 117.50093 * 359.97438 * 27 4 3 49 49 H 1.08997 * 117.50257 * 359.97257 * 28 4 3 50 50 H 1.08996 * 117.49931 * 144.97541 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1870 -0.1243 5 6 4.2285 0.5307 1.0390 6 8 5.0940 1.1286 1.6425 7 7 3.8910 -0.7206 1.4086 8 6 4.4531 -1.3001 2.6310 9 6 5.7959 -1.9604 2.3116 10 1 6.5333 -1.2076 2.0333 11 6 6.2956 -2.7815 3.5265 12 6 7.2317 -3.8132 2.8436 13 6 6.5158 -4.1012 1.5073 14 7 5.6369 -2.9512 1.2259 15 6 5.9505 -2.3561 -0.0800 16 6 5.3995 -3.2312 -1.1762 17 8 4.7194 -4.1962 -0.8978 18 7 5.6623 -2.9415 -2.4660 19 6 5.2453 -3.7909 -3.4581 20 1 4.7059 -4.6920 -3.2061 21 6 5.5114 -3.4894 -4.7882 22 7 6.1673 -2.3927 -5.0948 23 14 4.9366 -4.6429 -6.1403 24 1 3.4576 -4.7672 -6.0894 25 1 5.3419 -4.0984 -7.4611 26 1 5.5526 -5.9800 -5.9454 27 6 4.1093 0.9498 -1.5205 28 6 4.2703 2.3143 -0.8474 29 1 -0.3633 0.4350 -0.9310 30 1 -0.3633 -1.0239 0.0888 31 1 -0.3634 0.5887 0.8423 32 1 1.7603 1.8145 0.9309 33 1 1.6202 1.8768 -0.8425 34 1 3.2757 -1.2375 0.8653 35 1 3.7661 -2.0475 3.0281 36 1 4.6019 -0.5137 3.3709 37 1 5.4663 -3.2794 4.0289 38 1 6.8500 -2.1516 4.2220 39 1 7.3081 -4.7202 3.4433 40 1 8.2185 -3.3849 2.6677 41 1 5.9207 -5.0103 1.5939 42 1 7.2484 -4.2124 0.7079 43 1 7.0317 -2.2723 -0.1908 44 1 5.5008 -1.3654 -0.1452 45 1 6.1465 -2.1320 -2.6923 46 1 6.3533 -2.1825 -6.0233 47 1 4.9949 0.3190 -1.5979 48 1 3.4069 0.8777 -2.3510 49 1 3.6738 3.1402 -1.2349 50 1 5.2616 2.5814 -0.4815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481048524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -81.701421 kcal Electronic energy + Delta-G solvation = -31793.096658 eV Core-core repulsion = 27628.477128 eV Total energy + Delta-G solvation = -4164.619531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.27537 -39.10002 -37.87269 -37.45678 -36.13436 -34.31490 -33.83242 -31.82943 -31.04441 -29.92958 -28.32209 -26.66300 -25.90956 -25.26909 -24.05189 -22.49856 -22.33966 -21.04143 -20.12472 -19.37947 -18.95118 -17.79366 -17.38766 -16.38363 -16.10958 -15.96773 -15.78416 -15.45309 -15.37183 -15.17392 -14.44993 -14.39812 -14.14165 -13.86593 -13.78093 -13.48754 -13.43266 -12.85569 -12.56164 -12.38033 -12.18308 -12.11735 -11.79266 -11.67598 -11.53938 -11.48657 -11.38959 -11.19705 -11.05663 -10.92254 -10.77949 -10.56600 -10.48325 -10.40987 -10.27603 -10.15617 -9.84158 -9.51526 -9.42506 -8.88306 -8.29400 -7.88597 -7.76907 -6.35199 -3.75310 2.67790 3.22653 3.23080 3.28234 3.32661 3.56365 3.98951 4.01110 4.08160 4.30345 4.65776 4.70224 4.75959 4.80665 4.92464 5.00562 5.05801 5.17833 5.23777 5.26200 5.30199 5.31866 5.37830 5.47327 5.51657 5.60633 5.63153 5.67357 5.68505 5.81207 5.85308 5.85578 5.89151 5.93369 6.01661 6.09984 6.13681 6.20119 6.28244 6.39007 6.50645 6.71387 7.02177 7.37768 7.38441 7.60460 7.82617 8.13109 8.45255 8.70067 9.25418 9.62521 10.15323 10.82643 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007888 B = 0.004821 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.029058 B = 5807.104754 C = 7942.007392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.107 3.893 4 C -0.170 4.170 5 C 0.553 3.447 6 O -0.551 6.551 7 N -0.704 5.704 8 C 0.135 3.865 9 C 0.051 3.949 10 H 0.058 0.942 11 C -0.119 4.119 12 C -0.142 4.142 13 C 0.053 3.947 14 N -0.494 5.494 15 C 0.041 3.959 16 C 0.448 3.552 17 O -0.573 6.573 18 N -0.568 5.568 19 C -0.295 4.295 20 H 0.101 0.899 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.138 4.138 28 C -0.137 4.137 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.417 0.583 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.390 0.610 46 H 0.270 0.730 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 8.193 12.989 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.030 3.970 4 C -0.173 4.173 5 C 0.339 3.661 6 O -0.429 6.429 7 N -0.355 5.355 8 C 0.010 3.990 9 C -0.059 4.059 10 H 0.077 0.923 11 C -0.158 4.158 12 C -0.181 4.181 13 C -0.075 4.075 14 N -0.219 5.219 15 C -0.090 4.090 16 C 0.233 3.767 17 O -0.456 6.456 18 N -0.206 5.206 19 C -0.424 4.424 20 H 0.118 0.882 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.175 4.175 28 C -0.174 4.174 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.223 0.777 46 H 0.080 0.920 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.120 0.880 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.429 7.679 13.409 16.378 hybrid contribution 0.401 0.207 -1.263 1.341 sum -5.029 7.886 12.146 15.330 Atomic orbital electron populations 1.22737 0.80733 1.03044 0.99719 1.87903 1.19781 1.27140 1.95332 1.21844 0.89316 0.85277 1.00540 1.21415 0.94047 1.06965 0.94915 1.19348 0.81788 0.81462 0.83491 1.90657 1.31951 1.64798 1.55485 1.45837 1.48189 1.14621 1.26821 1.21389 0.94160 0.96882 0.86548 1.23030 0.96939 0.94205 0.91696 0.92345 1.22655 0.99277 0.97231 0.96637 1.22817 0.98567 0.99383 0.97332 1.22755 0.94252 0.95227 0.95223 1.63064 1.52650 1.06122 1.00036 1.22152 0.98392 0.98449 0.90050 1.19766 0.85733 0.87890 0.83293 1.90512 1.41478 1.30822 1.82744 1.41843 1.51128 1.23275 1.04318 1.19608 1.33563 1.04140 0.85105 0.88160 1.25206 0.97281 0.97128 0.98308 1.69607 1.40682 1.24585 1.19614 0.85970 0.79146 0.79943 0.79448 1.19991 1.21072 1.20052 1.23071 1.03163 0.98771 0.92513 1.22994 1.01775 0.91937 1.00728 0.94037 0.89302 0.94311 0.92782 0.92281 0.74639 0.89895 0.90495 0.90463 0.91027 0.90918 0.91860 0.90133 0.92993 0.93871 0.89817 0.77749 0.91980 0.87824 0.87335 0.87989 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -4.90 9.23 -35.23 -0.33 -5.23 16 3 C 0.11 1.23 5.76 37.16 0.21 1.44 16 4 C -0.17 -2.28 2.21 -155.66 -0.34 -2.62 16 5 C 0.55 8.52 6.20 -10.98 -0.07 8.45 16 6 O -0.55 -9.78 16.23 5.56 0.09 -9.69 16 7 N -0.70 -10.33 3.58 -60.29 -0.22 -10.54 16 8 C 0.14 1.79 5.76 -4.04 -0.02 1.77 16 9 C 0.05 0.72 2.76 -66.18 -0.18 0.54 16 10 H 0.06 0.93 7.81 -51.93 -0.41 0.52 16 11 C -0.12 -1.37 6.50 -24.59 -0.16 -1.53 16 12 C -0.14 -1.74 6.94 -24.91 -0.17 -1.92 16 13 C 0.05 0.86 6.14 -2.83 -0.02 0.84 16 14 N -0.49 -8.44 4.23 -224.81 -0.95 -9.39 16 15 C 0.04 0.79 4.85 -4.97 -0.02 0.77 16 16 C 0.45 10.70 7.55 -10.98 -0.08 10.62 16 17 O -0.57 -15.52 15.61 5.55 0.09 -15.43 16 18 N -0.57 -14.44 5.28 -10.96 -0.06 -14.50 16 19 C -0.29 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.93 7.17 -52.48 -0.38 2.56 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.14 -1.93 9.96 -26.74 -0.27 -2.19 16 28 C -0.14 -1.64 9.73 -26.73 -0.26 -1.90 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.42 6.57 7.55 -40.82 -0.31 6.27 16 35 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 36 H 0.08 0.98 7.63 -51.93 -0.40 0.59 16 37 H 0.08 0.82 7.97 -51.93 -0.41 0.41 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.05 0.91 7.36 -51.93 -0.38 0.53 16 43 H 0.04 0.81 7.77 -51.93 -0.40 0.40 16 44 H 0.08 1.55 5.29 -51.93 -0.27 1.28 16 45 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.10 1.64 7.69 -51.93 -0.40 1.24 16 48 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 49 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.11 1.39 7.87 -51.93 -0.41 0.98 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -32.37 406.47 -8.35 -40.72 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -8.29 Total: 17.73 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.51 Total: 7.86 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.50 Total: -58.20 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.15 Total: -30.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.37 -8.35 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481048524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.982 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds