Wall clock time and date at job start Sat Apr 11 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99584 * 2 1 4 4 C 1.53006 * 109.46928 * 180.02562 * 3 2 1 5 5 C 1.50697 * 112.84832 * 309.66581 * 4 3 2 6 6 O 1.21280 * 120.00018 * 228.80783 * 5 4 3 7 7 N 1.34774 * 120.00040 * 48.80390 * 5 4 3 8 8 C 1.46506 * 119.99990 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47257 * 180.02562 * 8 7 5 10 10 C 1.53513 * 114.16793 * 184.99879 * 9 8 7 11 11 N 1.47484 * 87.93060 * 220.32447 * 10 9 8 12 12 C 1.46895 * 110.99756 * 138.70311 * 11 10 9 13 13 C 1.50706 * 109.47182 * 170.00145 * 12 11 10 14 14 O 1.21297 * 119.99667 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00081 * 179.72734 * 13 12 11 16 16 C 1.37095 * 119.99878 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00160 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00380 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99401 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00554 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46847 * 89.99945 * 20 18 16 22 22 H 1.48493 * 109.47164 * 210.00376 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00260 * 20 18 16 24 24 C 1.47477 * 87.83167 * 27.01125 * 11 10 9 25 25 C 1.53779 * 113.69005 * 80.93459 * 4 3 2 26 26 C 1.53781 * 87.08284 * 89.12722 * 25 4 3 27 27 C 1.53780 * 113.61119 * 178.46992 * 4 3 2 28 28 H 1.08998 * 109.47545 * 60.00226 * 1 2 3 29 29 H 1.09003 * 109.46679 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47066 * 299.99625 * 1 2 3 31 31 H 1.08991 * 109.47416 * 60.00344 * 3 2 1 32 32 H 1.09004 * 109.46988 * 299.99637 * 3 2 1 33 33 H 0.96997 * 120.00247 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.46964 * 59.99642 * 8 7 5 35 35 H 1.09002 * 109.46662 * 300.00006 * 8 7 5 36 36 H 1.09003 * 113.37778 * 318.07254 * 9 8 7 37 37 H 1.09005 * 113.47855 * 105.56322 * 10 9 8 38 38 H 1.08997 * 113.53455 * 335.09903 * 10 9 8 39 39 H 1.09001 * 109.47613 * 50.00491 * 12 11 10 40 40 H 1.08998 * 109.47678 * 290.00386 * 12 11 10 41 41 H 0.96998 * 120.00525 * 359.97438 * 15 13 12 42 42 H 0.97004 * 120.00112 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.48071 * 87.76093 * 24 11 10 44 44 H 1.09004 * 113.47566 * 218.21901 * 24 11 10 45 45 H 1.09008 * 113.61107 * 203.67229 * 25 4 3 46 46 H 1.08998 * 113.61743 * 334.57682 * 25 4 3 47 47 H 1.09000 * 113.61247 * 270.88110 * 26 25 4 48 48 H 1.08993 * 113.61557 * 139.97814 * 26 25 4 49 49 H 1.08994 * 113.61755 * 25.34421 * 27 4 3 50 50 H 1.08999 * 113.61643 * 156.25146 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.0492 0.2548 1.0680 6 8 4.9531 0.6076 1.7956 7 7 3.5042 -0.9690 1.2152 8 6 4.0034 -1.8730 2.2545 9 6 3.2203 -3.1865 2.2070 10 6 3.5740 -4.1701 3.3314 11 7 3.4933 -5.2547 2.3353 12 6 4.5798 -6.2251 2.5246 13 6 4.3292 -7.4345 1.6611 14 8 3.3427 -7.4830 0.9569 15 7 5.2042 -8.4596 1.6668 16 6 4.9764 -9.5596 0.8808 17 1 4.0956 -9.6049 0.2575 18 6 5.8787 -10.6162 0.8862 19 7 6.9507 -10.5609 1.6444 20 14 5.5681 -12.1154 -0.1841 21 1 6.1953 -11.9120 -1.5147 22 1 6.1566 -13.3157 0.4624 23 1 4.1054 -12.3100 -0.3508 24 6 3.8468 -4.2596 1.3058 25 6 4.1333 0.9151 -1.3916 26 6 4.2010 2.4408 -1.5718 27 6 4.2606 2.5404 -0.0383 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8901 33 1 2.7816 -1.2514 0.6331 34 1 3.8755 -1.4084 3.2321 35 1 5.0609 -2.0744 2.0835 36 1 2.1498 -3.0467 2.0567 37 1 2.8111 -4.2354 4.1072 38 1 4.5757 -4.0261 3.7364 39 1 4.6186 -6.5276 3.5710 40 1 5.5284 -5.7680 2.2431 41 1 5.9954 -8.4188 2.2263 42 1 7.5805 -11.2986 1.6485 43 1 4.9215 -4.1389 1.1694 44 1 3.3152 -4.4008 0.3647 45 1 5.1116 0.4353 -1.3607 46 1 3.4416 0.4248 -2.0766 47 1 3.2963 2.8702 -2.0023 48 1 5.1099 2.7821 -2.0671 49 1 3.6717 3.3621 0.3691 50 1 5.2736 2.5050 0.3624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481635766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:25 Heat of formation + Delta-G solvation = -55.862058 kcal Electronic energy + Delta-G solvation = -29613.765949 eV Core-core repulsion = 25450.266897 eV Total energy + Delta-G solvation = -4163.499052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04097 -40.16431 -38.28662 -37.75265 -37.44812 -34.74401 -33.84004 -31.36572 -30.89146 -29.51663 -27.46857 -26.61937 -25.97068 -25.81739 -25.04349 -24.34530 -22.56357 -21.08903 -19.91833 -19.26135 -18.87534 -17.88218 -17.63655 -16.77030 -16.44147 -16.18223 -15.94729 -15.85746 -15.25014 -15.18980 -15.09819 -14.72211 -14.58410 -14.34243 -14.11951 -13.61651 -13.33505 -13.15248 -12.89857 -12.78134 -12.56452 -12.47897 -12.29477 -12.15480 -11.73768 -11.60379 -11.51860 -11.40208 -11.29282 -11.04385 -10.90310 -10.77554 -10.68795 -10.42243 -10.36754 -10.21727 -10.17716 -9.71102 -9.46323 -9.07091 -8.73812 -8.15632 -7.92060 -6.37896 -3.78516 2.47607 2.98857 3.20160 3.23055 3.28291 3.34519 3.94953 4.03510 4.07268 4.14550 4.26466 4.32824 4.37254 4.47065 4.59948 4.74273 4.80916 4.90003 4.98150 5.01535 5.03875 5.14123 5.17684 5.24382 5.31564 5.34037 5.39106 5.43002 5.46793 5.54234 5.56663 5.57788 5.61502 5.70607 5.72215 5.76781 5.80906 5.97939 6.02204 6.20615 6.32194 6.46257 6.59011 6.59136 7.23460 7.55966 7.58637 8.10190 8.20813 8.66583 9.22465 9.59146 10.11831 10.80103 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.001938 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.542369 B =14442.789641 C =14480.363396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.088 3.912 4 C -0.111 4.111 5 C 0.530 3.470 6 O -0.550 6.550 7 N -0.712 5.712 8 C 0.128 3.872 9 C -0.129 4.129 10 C 0.004 3.996 11 N -0.440 5.440 12 C 0.008 3.992 13 C 0.447 3.553 14 O -0.575 6.575 15 N -0.568 5.568 16 C -0.297 4.297 17 H 0.102 0.898 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.010 3.990 25 C -0.117 4.117 26 C -0.143 4.143 27 C -0.108 4.108 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.413 0.587 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 27.684 -1.942 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.012 3.988 4 C -0.114 4.114 5 C 0.315 3.685 6 O -0.428 6.428 7 N -0.367 5.367 8 C 0.004 3.996 9 C -0.148 4.148 10 C -0.126 4.126 11 N -0.161 5.161 12 C -0.124 4.124 13 C 0.232 3.768 14 O -0.459 6.459 15 N -0.205 5.205 16 C -0.427 4.427 17 H 0.120 0.880 18 C -0.181 4.181 19 N -0.545 5.545 20 Si 0.757 3.243 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.119 4.119 25 C -0.155 4.155 26 C -0.181 4.181 27 C -0.145 4.145 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.385 27.091 -1.933 28.425 hybrid contribution 0.716 -0.454 -0.214 0.875 sum -7.669 26.637 -2.147 27.802 Atomic orbital electron populations 1.22794 0.79869 1.03493 1.00131 1.87589 1.20576 1.27607 1.95427 1.22239 0.90259 0.85124 1.01211 1.22207 0.94708 0.97975 0.96501 1.20129 0.82185 0.82147 0.83991 1.90678 1.30315 1.75954 1.45884 1.46266 1.39037 1.14898 1.36493 1.21352 0.97938 0.88731 0.91552 1.22983 1.01107 0.92235 0.98442 1.23841 1.01473 0.91038 0.96223 1.68811 1.37995 1.05715 1.03600 1.22513 0.93523 0.95270 1.01105 1.19679 0.85603 0.84711 0.86758 1.90518 1.29657 1.81063 1.44612 1.41877 1.22321 1.15884 1.40462 1.19690 1.08358 0.93963 1.20654 0.87992 1.25255 0.95418 0.99432 0.97965 1.69615 1.11874 1.33488 1.39538 0.85859 0.78756 0.80257 0.79430 1.20458 1.20953 1.19433 1.23949 0.99442 0.90549 0.97962 1.22887 1.01723 0.97216 0.93684 1.22894 1.02637 0.96131 0.96409 1.22837 1.01794 0.93684 0.96216 0.93774 0.88957 0.93864 0.92418 0.91779 0.74702 0.91356 0.91472 0.87388 0.89467 0.91228 0.89387 0.92264 0.77557 0.91940 0.91409 0.89429 0.89322 0.90143 0.89909 0.90653 0.90879 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.95 7.59 -35.23 -0.27 -3.22 16 3 C 0.09 0.59 5.26 37.16 0.20 0.78 16 4 C -0.11 -0.93 1.12 -154.85 -0.17 -1.10 16 5 C 0.53 6.22 6.93 -10.99 -0.08 6.15 16 6 O -0.55 -8.34 15.90 5.56 0.09 -8.25 16 7 N -0.71 -7.69 5.24 -60.29 -0.32 -8.01 16 8 C 0.13 1.42 5.59 -4.04 -0.02 1.40 16 9 C -0.13 -1.46 4.09 -90.10 -0.37 -1.83 16 10 C 0.00 0.05 7.26 -7.55 -0.05 0.00 16 11 N -0.44 -7.43 5.82 -246.11 -1.43 -8.87 16 12 C 0.01 0.15 5.30 -4.98 -0.03 0.12 16 13 C 0.45 10.96 7.85 -10.98 -0.09 10.87 16 14 O -0.58 -16.25 16.01 5.54 0.09 -16.16 16 15 N -0.57 -14.80 5.29 -10.96 -0.06 -14.86 16 16 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 17 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 18 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 19 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 20 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.01 0.15 7.28 -7.56 -0.06 0.09 16 25 C -0.12 -0.87 7.20 -25.92 -0.19 -1.06 16 26 C -0.14 -0.83 7.73 -25.92 -0.20 -1.03 16 27 C -0.11 -0.80 7.00 -25.92 -0.18 -0.98 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 7.34 -51.93 -0.38 -0.06 16 33 H 0.41 4.12 5.72 -40.82 -0.23 3.89 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 39 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 40 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 41 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 42 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.07 0.96 7.15 -51.93 -0.37 0.59 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.09 0.75 8.09 -51.92 -0.42 0.33 16 46 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 47 H 0.08 0.37 7.64 -51.93 -0.40 -0.03 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 50 H 0.10 0.92 7.43 -51.93 -0.39 0.54 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -34.81 405.83 -8.72 -43.53 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.28 Total: 11.06 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.36 Total: 6.56 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -1.08 Total: -56.01 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.09 Total: -27.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.81 -8.72 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481635766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.332 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds