Wall clock time and date at job start Sat Apr 11 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00168 * 2 1 4 4 H 1.08997 * 109.46631 * 29.99905 * 3 2 1 5 5 C 1.50703 * 109.46995 * 270.00714 * 3 2 1 6 6 O 1.21281 * 120.00351 * 347.81040 * 5 3 2 7 7 N 1.34775 * 119.99948 * 167.82212 * 5 3 2 8 8 C 1.46502 * 119.99969 * 354.19996 * 7 5 3 9 9 C 1.46498 * 120.00193 * 174.19945 * 7 5 3 10 10 C 1.53512 * 114.17135 * 119.99584 * 9 7 5 11 11 N 1.47475 * 87.93126 * 87.81361 * 10 9 7 12 12 C 1.46900 * 111.00036 * 138.70328 * 11 10 9 13 13 C 1.50705 * 109.47318 * 170.00235 * 12 11 10 14 14 O 1.21286 * 119.99864 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99863 * 179.72627 * 13 12 11 16 16 C 1.37102 * 119.99817 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00018 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99963 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99962 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00038 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47108 * 90.00187 * 20 18 16 22 22 H 1.48500 * 109.47376 * 209.99981 * 20 18 16 23 23 H 1.48501 * 109.47408 * 330.00225 * 20 18 16 24 24 C 1.47481 * 87.83649 * 27.01187 * 11 10 9 25 25 C 1.52994 * 109.47308 * 150.00169 * 3 2 1 26 26 C 1.53788 * 113.61348 * 34.74878 * 25 3 2 27 27 C 1.53952 * 87.01530 * 220.04659 * 26 25 3 28 28 C 1.53779 * 87.11467 * 25.36656 * 27 26 25 29 29 H 1.09001 * 109.47481 * 59.99944 * 1 2 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47111 * 299.99639 * 1 2 3 32 32 H 1.09009 * 109.47034 * 264.92383 * 8 7 5 33 33 H 1.08993 * 109.47007 * 24.91895 * 8 7 5 34 34 H 1.08993 * 109.47225 * 144.92745 * 8 7 5 35 35 H 1.09004 * 113.25555 * 347.04630 * 9 7 5 36 36 H 1.09005 * 113.47750 * 333.04814 * 10 9 7 37 37 H 1.09001 * 113.53620 * 202.58846 * 10 9 7 38 38 H 1.08995 * 109.47367 * 50.00364 * 12 11 10 39 39 H 1.09004 * 109.47299 * 289.99934 * 12 11 10 40 40 H 0.96998 * 120.00116 * 359.97438 * 15 13 12 41 41 H 0.96996 * 119.99673 * 179.97438 * 19 18 16 42 42 H 1.09002 * 113.47684 * 87.75364 * 24 11 10 43 43 H 1.08999 * 113.47954 * 218.22127 * 24 11 10 44 44 H 1.09001 * 112.84957 * 165.94455 * 25 3 2 45 45 H 1.08999 * 113.61355 * 334.56612 * 26 25 3 46 46 H 1.08999 * 113.61349 * 105.46753 * 26 25 3 47 47 H 1.08994 * 113.54045 * 270.80639 * 27 26 25 48 48 H 1.09009 * 113.73856 * 139.94746 * 27 26 25 49 49 H 1.08997 * 113.60792 * 220.09064 * 28 27 26 50 50 H 1.08994 * 113.61620 * 89.18325 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2144 1.7644 -1.4208 6 8 2.1054 0.9747 -2.3348 7 7 2.5184 3.0524 -1.6759 8 6 2.5256 4.0327 -0.5872 9 6 2.8415 3.4722 -3.0417 10 6 1.9013 4.5452 -3.6086 11 7 2.7860 5.5612 -3.0085 12 6 2.9807 6.6953 -3.9218 13 6 3.6790 7.8138 -3.1922 14 8 3.9849 7.6793 -2.0262 15 7 3.9690 8.9613 -3.8369 16 6 4.6038 9.9790 -3.1730 17 1 4.8712 9.8614 -2.1332 18 6 4.9033 11.1618 -3.8378 19 7 5.5113 12.1376 -3.2013 20 14 4.4415 11.3650 -5.6364 21 1 3.0782 11.9455 -5.7349 22 1 5.4144 12.2711 -6.2979 23 1 4.4648 10.0398 -6.3062 24 6 3.8897 4.5904 -3.1288 25 6 3.3589 1.2632 0.7212 26 6 4.1301 -0.0502 0.5090 27 6 4.5254 0.0357 1.9944 28 6 3.2522 0.8721 2.2046 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.5616 4.5403 -0.5489 33 1 2.7057 3.5232 0.3593 34 1 3.3145 4.7641 -0.7621 35 1 3.0235 2.6363 -3.7172 36 1 0.9038 4.5243 -3.1696 37 1 1.8818 4.5753 -4.6980 38 1 2.0120 7.0440 -4.2796 39 1 3.5888 6.3790 -4.7694 40 1 3.7286 9.0670 -4.7707 41 1 5.7207 12.9631 -3.6655 42 1 4.4016 4.6318 -4.0902 43 1 4.5774 4.6077 -2.2833 44 1 3.9601 2.1556 0.5470 45 1 3.4888 -0.9004 0.2763 46 1 4.9738 0.0444 -0.1746 47 1 5.4467 0.5915 2.1682 48 1 4.5069 -0.9247 2.5097 49 1 3.3884 1.7102 2.8879 50 1 2.3706 0.2746 2.4363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483872558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:41 Heat of formation + Delta-G solvation = -30.527058 kcal Electronic energy + Delta-G solvation = -30472.076422 eV Core-core repulsion = 26309.675979 eV Total energy + Delta-G solvation = -4162.400444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.15529 -40.07227 -38.46062 -37.87666 -37.02624 -34.95266 -33.94543 -31.71392 -30.82283 -29.42109 -27.16289 -26.61035 -26.04568 -25.82285 -25.47580 -24.14926 -23.09992 -20.77624 -19.67020 -19.42228 -18.76525 -18.42312 -17.56672 -16.95047 -16.56976 -16.20365 -15.95709 -15.77711 -15.35479 -15.13498 -14.93604 -14.75965 -14.51807 -14.02909 -13.62293 -13.44246 -13.29021 -13.23308 -12.92303 -12.80576 -12.54870 -12.44016 -12.26950 -12.10844 -12.03356 -11.97304 -11.66697 -11.58309 -11.21324 -11.03824 -10.85383 -10.82206 -10.79427 -10.61857 -10.59252 -10.43053 -9.99806 -9.58301 -9.37860 -8.93668 -8.70243 -8.36127 -8.19571 -6.32921 -3.84316 2.39845 2.68935 2.99990 3.04568 3.13021 3.44620 3.71648 3.89861 4.08235 4.12830 4.33700 4.38072 4.44172 4.56043 4.62319 4.66809 4.81921 4.86414 4.95506 5.08825 5.11437 5.14421 5.19520 5.25107 5.31191 5.39268 5.42337 5.46859 5.50497 5.53918 5.55967 5.59147 5.64141 5.68619 5.74342 5.83215 5.84343 5.89648 5.96315 6.06377 6.30097 6.34937 6.44722 6.73289 6.97362 7.29661 7.56253 8.03171 8.12214 8.58525 8.93572 9.40756 9.82014 10.80306 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.002265 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.908546 B =12357.216473 C =13089.719525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.086 3.914 4 H 0.086 0.914 5 C 0.495 3.505 6 O -0.529 6.529 7 N -0.586 5.586 8 C 0.072 3.928 9 C 0.116 3.884 10 C -0.017 4.017 11 N -0.437 5.437 12 C 0.004 3.996 13 C 0.456 3.544 14 O -0.558 6.558 15 N -0.594 5.594 16 C -0.304 4.304 17 H 0.119 0.881 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.006 4.006 25 C -0.113 4.113 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.287 -23.057 4.321 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.025 3.975 4 H 0.104 0.896 5 C 0.282 3.718 6 O -0.405 6.405 7 N -0.320 5.320 8 C -0.070 4.070 9 C 0.011 3.989 10 C -0.147 4.147 11 N -0.159 5.159 12 C -0.128 4.128 13 C 0.242 3.758 14 O -0.439 6.439 15 N -0.234 5.234 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.163 4.163 27 C -0.179 4.179 28 C -0.167 4.167 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.105 -23.183 5.295 25.123 hybrid contribution -0.380 0.737 -2.478 2.613 sum -8.485 -22.446 2.817 24.161 Atomic orbital electron populations 1.22864 0.80826 1.03130 1.00016 1.87962 1.19724 1.24991 1.94353 1.21869 0.97160 0.86421 0.92092 0.89592 1.21365 0.76712 0.81570 0.92115 1.90680 1.49963 1.53319 1.46542 1.47473 1.68177 1.08168 1.08198 1.22045 1.04497 0.92581 0.87909 1.22011 0.96100 0.96455 0.84324 1.24338 0.99428 0.91969 0.99011 1.68860 1.05688 1.01617 1.39709 1.22555 1.01376 0.94111 0.94765 1.19542 0.84757 0.83447 0.88084 1.90543 1.55934 1.80933 1.16471 1.42232 1.54620 1.14648 1.11886 1.19411 1.33416 0.91653 0.98757 0.86314 1.25035 0.97271 0.95540 0.98365 1.69620 1.40365 1.05446 1.36790 0.86675 0.79299 0.78515 0.84888 1.19643 1.20190 1.19595 1.24299 0.95738 0.90650 1.02883 1.22794 0.93654 1.00420 0.96308 1.22844 0.99497 0.97601 0.96377 1.22823 0.97719 1.00396 0.96997 1.22900 0.98968 1.00100 0.94692 0.93866 0.89240 0.93885 0.92102 0.91456 0.88469 0.87092 0.89523 0.90493 0.89283 0.92052 0.79804 0.91628 0.90191 0.88794 0.87285 0.88612 0.91725 0.90205 0.91365 0.91170 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.35 -3.80 8.06 -54.84 -0.44 -4.24 16 3 C 0.09 0.86 1.67 -27.88 -0.05 0.81 16 4 H 0.09 0.71 6.97 -51.93 -0.36 0.35 16 5 C 0.50 6.24 6.94 -10.98 -0.08 6.16 16 6 O -0.53 -8.48 16.09 -14.05 -0.23 -8.70 16 7 N -0.59 -6.91 3.11 -173.62 -0.54 -7.46 16 8 C 0.07 0.79 8.84 59.85 0.53 1.32 16 9 C 0.12 1.39 4.63 -67.72 -0.31 1.08 16 10 C -0.02 -0.20 7.31 -7.55 -0.06 -0.25 16 11 N -0.44 -6.38 4.51 -246.12 -1.11 -7.50 16 12 C 0.00 0.07 5.30 -4.97 -0.03 0.04 16 13 C 0.46 10.07 7.85 -10.98 -0.09 9.99 16 14 O -0.56 -14.50 16.01 5.55 0.09 -14.41 16 15 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 16 C -0.30 -8.48 10.16 -14.93 -0.15 -8.64 16 17 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 18 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 19 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 20 Si 0.88 19.20 27.73 -169.99 -4.71 14.49 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.36 6.52 56.52 0.37 -5.00 16 24 C -0.01 -0.08 6.74 -7.55 -0.05 -0.13 16 25 C -0.11 -1.01 2.84 -89.81 -0.25 -1.26 16 26 C -0.13 -1.18 7.49 -25.82 -0.19 -1.37 16 27 C -0.14 -1.08 8.09 -25.83 -0.21 -1.29 16 28 C -0.13 -0.96 7.56 -25.92 -0.20 -1.16 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.07 0.58 4.68 -51.93 -0.24 0.34 16 34 H 0.10 1.30 5.91 -51.93 -0.31 0.99 16 35 H 0.11 1.35 7.34 -51.93 -0.38 0.97 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 38 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 39 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 40 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 43 H 0.09 1.33 7.20 -51.93 -0.37 0.96 16 44 H 0.11 0.96 6.66 -51.93 -0.35 0.61 16 45 H 0.10 1.01 6.90 -51.93 -0.36 0.65 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -34.36 395.96 -8.36 -42.73 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.97 Total: 10.27 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.13 Total: 7.63 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.93 Total: -53.73 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.58 Total: -27.35 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.36 -8.36 -42.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483872558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.199 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds