Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00168 * 2 1 4 4 H 1.08997 * 109.46631 * 29.99905 * 3 2 1 5 5 C 1.50703 * 109.46995 * 270.00714 * 3 2 1 6 6 O 1.21281 * 120.00351 * 347.81040 * 5 3 2 7 7 N 1.34775 * 119.99948 * 167.82212 * 5 3 2 8 8 C 1.46502 * 119.99969 * 354.19996 * 7 5 3 9 9 C 1.46498 * 120.00193 * 174.19945 * 7 5 3 10 10 C 1.53512 * 114.17135 * 119.99584 * 9 7 5 11 11 N 1.47475 * 87.93126 * 87.81361 * 10 9 7 12 12 C 1.46900 * 111.00036 * 138.70328 * 11 10 9 13 13 C 1.50705 * 109.47318 * 170.00235 * 12 11 10 14 14 O 1.21286 * 119.99864 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99863 * 179.72627 * 13 12 11 16 16 C 1.37102 * 119.99817 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00018 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99963 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99962 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00038 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47108 * 90.00187 * 20 18 16 22 22 H 1.48500 * 109.47376 * 209.99981 * 20 18 16 23 23 H 1.48501 * 109.47408 * 330.00225 * 20 18 16 24 24 C 1.47481 * 87.83649 * 27.01187 * 11 10 9 25 25 C 1.52994 * 109.47308 * 150.00169 * 3 2 1 26 26 C 1.53788 * 113.61348 * 34.74878 * 25 3 2 27 27 C 1.53952 * 87.01530 * 220.04659 * 26 25 3 28 28 C 1.53779 * 87.11467 * 25.36656 * 27 26 25 29 29 H 1.09001 * 109.47481 * 59.99944 * 1 2 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47111 * 299.99639 * 1 2 3 32 32 H 1.09009 * 109.47034 * 264.92383 * 8 7 5 33 33 H 1.08993 * 109.47007 * 24.91895 * 8 7 5 34 34 H 1.08993 * 109.47225 * 144.92745 * 8 7 5 35 35 H 1.09004 * 113.25555 * 347.04630 * 9 7 5 36 36 H 1.09005 * 113.47750 * 333.04814 * 10 9 7 37 37 H 1.09001 * 113.53620 * 202.58846 * 10 9 7 38 38 H 1.08995 * 109.47367 * 50.00364 * 12 11 10 39 39 H 1.09004 * 109.47299 * 289.99934 * 12 11 10 40 40 H 0.96998 * 120.00116 * 359.97438 * 15 13 12 41 41 H 0.96996 * 119.99673 * 179.97438 * 19 18 16 42 42 H 1.09002 * 113.47684 * 87.75364 * 24 11 10 43 43 H 1.08999 * 113.47954 * 218.22127 * 24 11 10 44 44 H 1.09001 * 112.84957 * 165.94455 * 25 3 2 45 45 H 1.08999 * 113.61355 * 334.56612 * 26 25 3 46 46 H 1.08999 * 113.61349 * 105.46753 * 26 25 3 47 47 H 1.08994 * 113.54045 * 270.80639 * 27 26 25 48 48 H 1.09009 * 113.73856 * 139.94746 * 27 26 25 49 49 H 1.08997 * 113.60792 * 220.09064 * 28 27 26 50 50 H 1.08994 * 113.61620 * 89.18325 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2144 1.7644 -1.4208 6 8 2.1054 0.9747 -2.3348 7 7 2.5184 3.0524 -1.6759 8 6 2.5256 4.0327 -0.5872 9 6 2.8415 3.4722 -3.0417 10 6 1.9013 4.5452 -3.6086 11 7 2.7860 5.5612 -3.0085 12 6 2.9807 6.6953 -3.9218 13 6 3.6790 7.8138 -3.1922 14 8 3.9849 7.6793 -2.0262 15 7 3.9690 8.9613 -3.8369 16 6 4.6038 9.9790 -3.1730 17 1 4.8712 9.8614 -2.1332 18 6 4.9033 11.1618 -3.8378 19 7 5.5113 12.1376 -3.2013 20 14 4.4415 11.3650 -5.6364 21 1 3.0782 11.9455 -5.7349 22 1 5.4144 12.2711 -6.2979 23 1 4.4648 10.0398 -6.3062 24 6 3.8897 4.5904 -3.1288 25 6 3.3589 1.2632 0.7212 26 6 4.1301 -0.0502 0.5090 27 6 4.5254 0.0357 1.9944 28 6 3.2522 0.8721 2.2046 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.5616 4.5403 -0.5489 33 1 2.7057 3.5232 0.3593 34 1 3.3145 4.7641 -0.7621 35 1 3.0235 2.6363 -3.7172 36 1 0.9038 4.5243 -3.1696 37 1 1.8818 4.5753 -4.6980 38 1 2.0120 7.0440 -4.2796 39 1 3.5888 6.3790 -4.7694 40 1 3.7286 9.0670 -4.7707 41 1 5.7207 12.9631 -3.6655 42 1 4.4016 4.6318 -4.0902 43 1 4.5774 4.6077 -2.2833 44 1 3.9601 2.1556 0.5470 45 1 3.4888 -0.9004 0.2763 46 1 4.9738 0.0444 -0.1746 47 1 5.4467 0.5915 2.1682 48 1 4.5069 -0.9247 2.5097 49 1 3.3884 1.7102 2.8879 50 1 2.3706 0.2746 2.4363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483872558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -55.777819 kcal Electronic energy + Delta-G solvation = -30473.171378 eV Core-core repulsion = 26309.675979 eV Total energy + Delta-G solvation = -4163.495399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.13292 -41.03260 -39.86130 -39.08688 -37.79899 -36.09276 -35.82514 -33.73626 -31.92681 -30.35865 -28.20974 -27.43805 -27.14490 -26.83467 -26.43005 -25.30565 -24.22889 -21.69272 -21.26908 -20.37066 -20.26432 -19.72521 -18.51614 -17.82739 -17.75044 -17.33804 -17.03863 -16.92076 -16.57129 -16.32782 -16.16054 -15.77521 -15.56686 -15.14563 -14.87514 -14.82113 -14.44127 -14.30400 -14.28727 -14.03871 -13.70355 -13.50989 -13.26531 -13.15622 -13.01648 -12.81475 -12.77976 -12.62228 -12.41723 -12.36650 -12.10876 -11.99188 -11.90101 -11.63867 -11.49613 -11.49000 -11.27191 -11.09697 -10.46910 -10.24277 -10.22557 -9.75379 -9.67995 -8.40225 -6.00523 1.29781 1.35485 1.43299 1.44045 1.78977 1.99275 2.23230 2.65537 2.72556 3.15122 3.24107 3.33442 3.42060 3.65904 3.73487 3.75795 3.86882 3.97232 4.10183 4.15175 4.19373 4.23975 4.32047 4.37358 4.41085 4.47570 4.50334 4.52869 4.57402 4.65329 4.75672 4.79757 4.81374 4.82827 4.91159 4.99089 5.09489 5.12039 5.12493 5.29095 5.31134 5.49502 5.54155 5.62806 5.87962 5.98711 6.02309 6.35897 6.61380 6.90582 7.06552 7.42398 8.00176 8.77520 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.002265 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.908546 B =12357.216473 C =13089.719525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.370 6.370 3 C 0.089 3.911 4 H 0.106 0.894 5 C 0.493 3.507 6 O -0.568 6.568 7 N -0.585 5.585 8 C 0.079 3.921 9 C 0.117 3.883 10 C -0.004 4.004 11 N -0.463 5.463 12 C 0.016 3.984 13 C 0.455 3.545 14 O -0.605 6.605 15 N -0.596 5.596 16 C -0.324 4.324 17 H 0.055 0.945 18 C -0.017 4.017 19 N -0.936 5.936 20 Si 0.964 3.036 21 H -0.258 1.258 22 H -0.277 1.277 23 H -0.231 1.231 24 C -0.005 4.005 25 C -0.116 4.116 26 C -0.133 4.133 27 C -0.136 4.136 28 C -0.120 4.120 29 H 0.030 0.970 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.388 0.612 41 H 0.278 0.722 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.053 0.947 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -24.189 2.405 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.028 3.972 4 H 0.124 0.876 5 C 0.282 3.718 6 O -0.447 6.447 7 N -0.318 5.318 8 C -0.063 4.063 9 C 0.012 3.988 10 C -0.134 4.134 11 N -0.186 5.186 12 C -0.116 4.116 13 C 0.243 3.757 14 O -0.488 6.488 15 N -0.238 5.238 16 C -0.454 4.454 17 H 0.074 0.926 18 C -0.215 4.215 19 N -0.577 5.577 20 Si 0.784 3.216 21 H -0.183 1.183 22 H -0.202 1.202 23 H -0.155 1.155 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.170 4.170 27 C -0.174 4.174 28 C -0.157 4.157 29 H 0.049 0.951 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.112 0.888 40 H 0.224 0.776 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.790 -24.334 3.384 26.447 hybrid contribution 0.165 1.029 -1.744 2.032 sum -9.625 -23.305 1.640 25.268 Atomic orbital electron populations 1.23025 0.79637 1.04191 1.00431 1.87950 1.21130 1.25381 1.94280 1.21947 0.98100 0.86681 0.90509 0.87608 1.21887 0.75760 0.81216 0.92905 1.90655 1.51892 1.54216 1.47889 1.47550 1.67567 1.08191 1.08452 1.21986 1.03496 0.92110 0.88702 1.21996 0.96022 0.96271 0.84542 1.24344 0.98619 0.89905 1.00495 1.68827 1.07082 1.02171 1.40529 1.22499 1.02346 0.92026 0.94681 1.20837 0.83022 0.84077 0.87771 1.90526 1.57325 1.81910 1.19048 1.42075 1.54923 1.14194 1.12657 1.18983 1.35437 0.94042 0.96904 0.92648 1.26098 0.96410 0.94250 1.04761 1.69806 1.41834 1.06356 1.39720 0.85376 0.79147 0.80307 0.76751 1.18270 1.20208 1.15452 1.24331 0.95475 0.90689 1.02986 1.22841 0.93060 1.00053 0.97451 1.22827 0.99102 0.97520 0.97570 1.22814 0.98146 1.00967 0.95435 1.22868 0.98883 1.00383 0.93552 0.95105 0.88014 0.91696 0.92064 0.89149 0.90958 0.87094 0.89489 0.87728 0.86460 0.88785 0.77631 0.91244 0.88428 0.90847 0.87339 0.89940 0.92791 0.89669 0.90646 0.89881 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.81 113.37 1.23 1.57 16 2 O -0.37 -7.61 8.06 -130.23 -1.05 -8.66 16 3 C 0.09 1.68 1.67 29.85 0.05 1.73 16 4 H 0.11 1.54 6.97 -2.39 -0.02 1.52 16 5 C 0.49 12.15 6.94 87.66 0.61 12.75 16 6 O -0.57 -18.12 16.09 15.71 0.25 -17.86 16 7 N -0.58 -13.33 3.11 -821.61 -2.56 -15.89 16 8 C 0.08 1.68 8.84 127.77 1.13 2.81 16 9 C 0.12 2.63 4.63 45.45 0.21 2.85 16 10 C 0.00 -0.08 7.31 83.57 0.61 0.53 16 11 N -0.46 -12.67 4.51 -932.57 -4.21 -16.88 16 12 C 0.02 0.46 5.30 85.56 0.45 0.91 16 13 C 0.46 19.85 7.85 87.66 0.69 20.54 16 14 O -0.60 -32.45 16.01 -3.05 -0.05 -32.50 16 15 N -0.60 -27.48 5.09 -306.98 -1.56 -29.04 16 16 C -0.32 -18.76 10.16 84.04 0.85 -17.90 16 17 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 18 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 19 N -0.94 -56.18 13.96 21.66 0.30 -55.88 16 20 Si 0.96 38.37 27.73 68.60 1.90 40.27 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 22 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 24 C -0.01 -0.13 6.74 83.57 0.56 0.44 16 25 C -0.12 -1.94 2.84 -10.27 -0.03 -1.97 16 26 C -0.13 -2.46 7.49 31.18 0.23 -2.22 16 27 C -0.14 -1.90 8.09 31.18 0.25 -1.64 16 28 C -0.12 -1.55 7.56 31.12 0.24 -1.32 16 29 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 0.67 8.09 -2.38 -0.02 0.65 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.09 1.46 4.68 -2.39 -0.01 1.45 16 34 H 0.07 1.96 5.91 -2.39 -0.01 1.95 16 35 H 0.11 2.55 7.34 -2.38 -0.02 2.53 16 36 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.10 1.60 7.91 -2.39 -0.02 1.59 16 38 H 0.12 2.74 8.08 -2.39 -0.02 2.72 16 39 H 0.09 2.12 7.30 -2.39 -0.02 2.11 16 40 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 41 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.10 2.05 7.42 -2.39 -0.02 2.03 16 43 H 0.07 2.11 7.20 -2.39 -0.02 2.09 16 44 H 0.11 1.82 6.66 -2.39 -0.02 1.81 16 45 H 0.08 1.75 6.90 -2.39 -0.02 1.74 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 1.13 7.88 -2.39 -0.02 1.11 16 Total: -1.00 -80.62 395.96 0.94 -79.67 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: 0.36 Total: 38.17 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 7.55 Total: 18.61 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -8.03 Total: -117.69 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -0.85 Total: -59.03 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.90 Total: 40.27 kcal Total: -80.62 0.94 -79.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483872558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.896 kcal (2) G-P(sol) polarization free energy of solvation -80.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds