Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99980 * 2 1 4 4 H 1.09004 * 109.46993 * 30.00619 * 3 2 1 5 5 C 1.50707 * 109.46883 * 150.00085 * 3 2 1 6 6 O 1.21282 * 119.99877 * 32.49682 * 5 3 2 7 7 N 1.34768 * 120.00042 * 212.49512 * 5 3 2 8 8 C 1.46511 * 120.00173 * 5.74364 * 7 5 3 9 9 C 1.46497 * 120.00393 * 185.74541 * 7 5 3 10 10 C 1.53932 * 113.73689 * 216.73022 * 9 7 5 11 11 N 1.47965 * 86.18149 * 221.91609 * 10 9 7 12 12 C 1.46899 * 111.00328 * 137.57881 * 11 10 9 13 13 C 1.50700 * 109.46969 * 70.64119 * 12 11 10 14 14 O 1.21291 * 119.99722 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00079 * 180.02562 * 13 12 11 16 16 C 1.37101 * 120.00236 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99708 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00145 * 179.97438 * 16 15 13 19 19 N 1.31415 * 120.00134 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99988 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47108 * 60.00300 * 20 18 16 22 22 H 1.48500 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47167 * 300.00132 * 20 18 16 24 24 C 1.47968 * 90.75963 * 24.68620 * 11 10 9 25 25 C 1.52991 * 109.47340 * 270.00061 * 3 2 1 26 26 C 1.53779 * 113.61469 * 155.52350 * 25 3 2 27 27 C 1.53782 * 87.08336 * 220.02234 * 26 25 3 28 28 C 1.53777 * 87.07971 * 25.43043 * 27 26 25 29 29 H 1.09000 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46742 * 299.99451 * 1 2 3 31 31 H 1.08997 * 109.47482 * 59.99538 * 1 2 3 32 32 H 1.08994 * 109.46746 * 84.92424 * 8 7 5 33 33 H 1.08996 * 109.47095 * 204.92690 * 8 7 5 34 34 H 1.08995 * 109.46590 * 324.92947 * 8 7 5 35 35 H 1.09004 * 112.93671 * 348.43208 * 9 7 5 36 36 H 1.09000 * 113.76218 * 336.23090 * 10 9 7 37 37 H 1.08998 * 113.75980 * 107.60395 * 10 9 7 38 38 H 1.08998 * 109.47606 * 190.64394 * 12 11 10 39 39 H 1.09003 * 109.47139 * 310.64444 * 12 11 10 40 40 H 0.97008 * 120.00451 * 0.02562 * 15 13 12 41 41 H 0.96992 * 120.00034 * 179.97438 * 19 18 16 42 42 H 1.08996 * 113.76078 * 220.98786 * 24 11 10 43 43 H 1.09009 * 113.85636 * 89.64065 * 24 11 10 44 44 H 1.08994 * 112.85230 * 286.83014 * 25 3 2 45 45 H 1.09002 * 113.61857 * 334.56910 * 26 25 3 46 46 H 1.09002 * 113.61486 * 105.47159 * 26 25 3 47 47 H 1.09008 * 113.61222 * 270.88357 * 27 26 25 48 48 H 1.09001 * 113.69320 * 139.99306 * 27 26 25 49 49 H 1.09001 * 113.61685 * 220.02016 * 28 27 26 50 50 H 1.09006 * 113.61521 * 89.11965 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5140 5 6 3.3387 1.2638 0.7104 6 8 4.0249 0.2653 0.6552 7 7 3.7642 2.3361 1.4071 8 6 2.8836 3.4943 1.5794 9 6 5.1073 2.3439 1.9920 10 6 5.1828 3.0429 3.3614 11 7 6.4449 3.6427 2.8748 12 6 6.5285 5.0628 3.2414 13 6 6.7388 5.1861 4.7286 14 8 6.8122 4.1891 5.4153 15 7 6.8452 6.4042 5.2954 16 6 7.0370 6.5164 6.6483 17 1 7.1024 5.6286 7.2598 18 6 7.1473 7.7722 7.2326 19 7 7.0672 8.8525 6.4885 20 14 7.4079 7.9251 9.0760 21 1 8.6698 7.2406 9.4559 22 1 7.4919 9.3606 9.4467 23 1 6.2687 7.2955 9.7909 24 6 6.0032 3.4824 1.4717 25 6 2.2177 1.7714 -1.4424 26 6 2.2597 3.3009 -1.5957 27 6 1.4394 3.1158 -2.8832 28 6 0.9231 1.8026 -2.2719 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2283 3.3283 2.4344 33 1 3.4859 4.3863 1.7511 34 1 2.2815 3.6297 0.6810 35 1 5.5857 1.3646 1.9705 36 1 4.3872 3.7690 3.5283 37 1 5.3166 2.3569 4.1978 38 1 7.3647 5.5250 2.7167 39 1 5.6022 5.5652 2.9626 40 1 6.7861 7.2016 4.7462 41 1 7.1438 9.7291 6.8964 42 1 6.7923 3.1478 0.7984 43 1 5.4474 4.3363 1.0842 44 1 3.0418 1.2588 -1.9384 45 1 1.7241 3.8334 -0.8096 46 1 3.2611 3.6951 -1.7688 47 1 2.0513 2.9719 -3.7738 48 1 0.6631 3.8686 -3.0201 49 1 0.8455 0.9870 -2.9909 50 1 0.0222 1.9253 -1.6707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483872559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -35.809239 kcal Electronic energy + Delta-G solvation = -30363.572560 eV Core-core repulsion = 26200.943064 eV Total energy + Delta-G solvation = -4162.629496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12512 -40.03716 -38.57577 -37.68878 -37.16965 -35.10397 -33.90707 -31.34245 -30.66900 -29.45453 -27.39016 -26.87508 -26.12260 -25.91007 -25.56060 -24.29557 -23.02323 -20.41008 -20.08895 -19.28882 -18.99833 -17.99839 -17.74309 -16.90479 -16.75605 -16.38853 -16.10836 -15.72955 -15.48287 -15.15539 -14.84355 -14.54419 -14.18727 -14.01674 -13.89921 -13.66871 -13.42403 -13.19880 -13.02393 -12.85902 -12.67199 -12.55840 -12.38210 -12.28315 -12.06646 -11.78911 -11.75049 -11.53095 -11.32180 -11.10244 -11.00112 -10.90836 -10.71635 -10.61273 -10.45881 -10.23448 -10.12727 -9.54229 -9.51716 -8.78808 -8.71869 -8.27606 -7.99079 -6.44220 -3.85082 2.30345 2.52337 3.18368 3.24190 3.28744 3.48377 3.86187 3.95442 4.05562 4.16829 4.18981 4.22430 4.32323 4.47165 4.51907 4.61158 4.70498 4.82211 4.85270 4.95041 4.97162 5.01031 5.08072 5.18618 5.23148 5.24981 5.29715 5.37136 5.39895 5.41656 5.45227 5.47367 5.54251 5.63775 5.70260 5.72586 5.76980 5.95091 5.98925 6.15423 6.22945 6.30382 6.56225 6.69540 7.09902 7.19659 7.52760 7.98346 8.02896 8.58589 9.15422 9.51047 10.02853 10.73461 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002138 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.411142 B =13093.655786 C =13368.781917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.358 6.358 3 C 0.083 3.917 4 H 0.081 0.919 5 C 0.520 3.480 6 O -0.517 6.517 7 N -0.602 5.602 8 C 0.060 3.940 9 C 0.114 3.886 10 C 0.013 3.987 11 N -0.448 5.448 12 C 0.014 3.986 13 C 0.443 3.557 14 O -0.578 6.578 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.903 5.903 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.013 4.013 25 C -0.125 4.125 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 -7.798 -19.633 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.275 6.275 3 C 0.022 3.978 4 H 0.099 0.901 5 C 0.307 3.693 6 O -0.391 6.391 7 N -0.337 5.337 8 C -0.083 4.083 9 C 0.010 3.990 10 C -0.116 4.116 11 N -0.170 5.170 12 C -0.118 4.118 13 C 0.228 3.772 14 O -0.461 6.461 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.143 4.143 25 C -0.144 4.144 26 C -0.178 4.178 27 C -0.177 4.177 28 C -0.173 4.173 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.676 -9.233 -18.909 25.655 hybrid contribution -0.826 1.610 0.443 1.863 sum -15.502 -7.623 -18.466 25.286 Atomic orbital electron populations 1.23124 0.80759 1.03425 1.00480 1.88034 1.19614 1.24994 1.94905 1.22065 0.93399 0.86735 0.95648 0.90085 1.20362 0.87618 0.82763 0.78573 1.90711 1.56993 1.31009 1.60420 1.47835 1.15771 1.16915 1.53139 1.22125 0.94734 0.89111 1.02314 1.23269 0.81286 1.01020 0.93396 1.24263 0.91583 0.98532 0.97230 1.68377 1.31686 1.13620 1.03351 1.22445 1.01638 0.90515 0.97243 1.19664 0.84812 0.84453 0.88298 1.90533 1.55410 1.36562 1.63612 1.41860 1.63363 1.06115 1.08745 1.19649 1.46379 0.93893 0.82944 0.87981 1.25257 0.97356 0.94804 1.00486 1.69600 1.50310 0.98104 1.36377 0.85919 0.79187 0.76998 0.82136 1.19846 1.20967 1.19921 1.24517 0.98241 0.97857 0.93711 1.23006 1.00325 0.96924 0.94163 1.23119 1.01440 0.94840 0.98373 1.22805 0.99817 0.97662 0.97397 1.23022 0.96690 0.98426 0.99121 0.89181 0.93918 0.92873 0.92016 0.90312 0.90397 0.85311 0.91069 0.88096 0.88972 0.92974 0.77518 0.91815 0.88801 0.91118 0.87890 0.89430 0.90666 0.89903 0.91061 0.90848 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.56 101.05 1.07 1.19 16 2 O -0.36 -4.01 10.01 -52.64 -0.53 -4.54 16 3 C 0.08 0.80 1.97 -27.88 -0.05 0.74 16 4 H 0.08 0.59 5.82 -51.93 -0.30 0.29 16 5 C 0.52 6.71 6.83 -10.99 -0.08 6.64 16 6 O -0.52 -8.90 16.26 -11.85 -0.19 -9.10 16 7 N -0.60 -6.80 3.09 -175.27 -0.54 -7.35 16 8 C 0.06 0.48 8.53 59.85 0.51 0.99 16 9 C 0.11 1.52 4.41 -69.63 -0.31 1.21 16 10 C 0.01 0.21 6.15 -2.77 -0.02 0.19 16 11 N -0.45 -7.42 5.95 -239.88 -1.43 -8.85 16 12 C 0.01 0.24 5.31 -4.98 -0.03 0.21 16 13 C 0.44 10.36 7.59 -10.99 -0.08 10.27 16 14 O -0.58 -15.63 15.13 5.55 0.08 -15.54 16 15 N -0.56 -14.13 5.29 -10.97 -0.06 -14.19 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 20 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.01 -0.16 7.47 -2.76 -0.02 -0.19 16 25 C -0.13 -0.98 3.35 -89.81 -0.30 -1.28 16 26 C -0.14 -0.84 6.79 -25.92 -0.18 -1.01 16 27 C -0.14 -0.73 8.08 -25.92 -0.21 -0.94 16 28 C -0.14 -0.79 6.23 -25.92 -0.16 -0.95 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.05 0.27 4.84 -51.93 -0.25 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.63 6.17 -51.93 -0.32 0.31 16 34 H 0.08 0.45 3.10 -51.93 -0.16 0.29 16 35 H 0.13 1.96 7.22 -51.93 -0.37 1.58 16 36 H 0.07 1.04 6.24 -51.93 -0.32 0.72 16 37 H 0.10 1.80 8.09 -51.93 -0.42 1.38 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.05 0.78 7.69 -51.93 -0.40 0.38 16 40 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 0.75 6.71 -51.92 -0.35 0.40 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.09 0.42 5.80 -51.93 -0.30 0.12 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.41 6.14 -51.93 -0.32 0.09 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -34.64 390.63 -8.75 -43.39 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.58 Total: 8.77 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.10 Total: 9.15 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.30 Total: -53.94 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.64 Total: -29.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.64 -8.75 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483872559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.577 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds