Wall clock time and date at job start Sat Apr 11 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45758 * 117.94825 * 2 1 4 4 C 1.52924 * 110.48687 * 199.07655 * 3 2 1 5 5 C 1.53338 * 108.67222 * 309.24679 * 4 3 2 6 6 H 1.09001 * 109.67378 * 307.75604 * 5 4 3 7 7 C 1.50707 * 109.67095 * 187.26744 * 5 4 3 8 8 O 1.21279 * 119.99795 * 335.39478 * 7 5 4 9 9 N 1.34780 * 119.99708 * 155.39780 * 7 5 4 10 10 C 1.46922 * 120.63336 * 355.37023 * 9 7 5 11 11 C 1.53193 * 108.77653 * 126.36953 * 10 9 7 12 12 C 1.53033 * 109.31162 * 54.63407 * 11 10 9 13 13 C 1.53041 * 109.54169 * 298.63322 * 12 11 10 14 14 C 1.52992 * 109.52799 * 181.33812 * 13 12 11 15 15 O 1.42892 * 109.47427 * 65.08220 * 14 13 12 16 16 N 1.46507 * 109.49672 * 301.41821 * 13 12 11 17 17 C 1.36932 * 119.99910 * 299.83174 * 16 13 12 18 18 H 1.08004 * 120.00105 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00204 * 179.97438 * 17 16 13 20 20 N 1.31618 * 119.99613 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00293 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47323 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.46967 * 300.00537 * 21 19 17 24 24 H 1.48504 * 109.47228 * 60.00144 * 21 19 17 25 25 C 1.46927 * 120.62738 * 175.34585 * 9 7 5 26 26 C 1.53069 * 108.42931 * 67.53489 * 5 4 3 27 27 C 1.33349 * 117.94542 * 180.02562 * 2 1 3 28 28 O 1.21278 * 118.25007 * 357.79216 * 27 2 1 29 29 H 1.08997 * 109.47154 * 89.99677 * 1 2 3 30 30 H 1.08992 * 109.46977 * 210.00128 * 1 2 3 31 31 H 1.09003 * 109.46925 * 330.00454 * 1 2 3 32 32 H 1.08995 * 109.30223 * 78.76362 * 3 2 1 33 33 H 1.09003 * 109.29763 * 319.38662 * 3 2 1 34 34 H 1.08996 * 109.60235 * 189.48673 * 4 3 2 35 35 H 1.09004 * 109.73697 * 69.08054 * 4 3 2 36 36 H 1.09003 * 109.58271 * 246.15550 * 10 9 7 37 37 H 1.08997 * 109.58794 * 6.43725 * 10 9 7 38 38 H 1.09003 * 109.49594 * 174.58831 * 11 10 9 39 39 H 1.08999 * 109.49536 * 294.68062 * 11 10 9 40 40 H 1.09006 * 109.46117 * 178.61834 * 12 11 10 41 41 H 1.08994 * 109.46259 * 58.65655 * 12 11 10 42 42 H 1.09006 * 109.47435 * 185.08174 * 14 13 12 43 43 H 1.09000 * 109.46907 * 305.07547 * 14 13 12 44 44 H 0.96701 * 114.00141 * 180.02562 * 15 14 13 45 45 H 0.96995 * 119.99751 * 119.83232 * 16 13 12 46 46 H 0.97001 * 120.00004 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.58924 * 113.84282 * 25 9 7 48 48 H 1.09006 * 109.70282 * 353.48411 * 25 9 7 49 49 H 1.08992 * 109.40190 * 71.22106 * 26 5 4 50 50 H 1.08998 * 109.40084 * 190.97023 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 -0.4682 5 6 4.2492 -0.0014 0.3396 6 1 4.1093 0.1817 1.4050 7 6 5.7217 -0.0625 0.0245 8 8 6.1337 0.3641 -1.0334 9 7 6.5807 -0.5913 0.9185 10 6 6.1127 -1.0194 2.2437 11 6 6.5368 -2.4739 2.4704 12 6 8.0485 -2.5977 2.2675 13 6 8.4058 -2.2087 0.8311 14 6 9.9129 -2.3646 0.6189 15 8 10.2702 -3.7432 0.7347 16 7 7.6879 -3.0784 -0.1040 17 6 7.8890 -4.4325 -0.0717 18 1 8.5766 -4.8594 0.6435 19 6 7.2084 -5.2567 -0.9574 20 7 6.3700 -4.7365 -1.8285 21 14 7.4822 -7.1039 -0.9128 22 1 6.6440 -7.7539 -1.9522 23 1 8.9136 -7.3986 -1.1762 24 1 7.1071 -7.6278 0.4252 25 6 8.0029 -0.7512 0.5859 26 6 3.5839 -1.3241 -0.0487 27 6 2.0899 -1.1780 -0.0005 28 8 1.4159 -2.1854 0.0402 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 2.1399 1.6998 1.0090 33 1 1.6271 1.9718 -0.6697 34 1 4.1385 2.0563 -0.3044 35 1 3.6127 0.8738 -1.5285 36 1 6.5575 -0.3853 3.0107 37 1 5.0265 -0.9418 2.2903 38 1 6.2802 -2.7735 3.4865 39 1 6.0202 -3.1185 1.7592 40 1 8.3566 -3.6269 2.4522 41 1 8.5637 -1.9344 2.9622 42 1 10.1795 -2.0023 -0.3741 43 1 10.4476 -1.7860 1.3722 44 1 11.2136 -3.9168 0.6117 45 1 7.0701 -2.6951 -0.7460 46 1 5.8947 -5.3124 -2.4477 47 1 8.6019 -0.0953 1.2176 48 1 8.1660 -0.4983 -0.4618 49 1 3.8880 -1.5997 -1.0583 50 1 3.8943 -2.1035 0.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484843777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:56 Heat of formation + Delta-G solvation = -92.165046 kcal Electronic energy + Delta-G solvation = -32451.796357 eV Core-core repulsion = 28286.723089 eV Total energy + Delta-G solvation = -4165.073267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.85037 -39.74318 -37.98821 -36.28836 -35.75199 -34.21079 -33.65494 -31.96716 -31.30451 -29.81342 -28.71655 -27.53425 -25.52306 -25.36565 -24.34634 -23.50635 -22.54222 -21.76442 -19.29483 -18.71039 -18.25424 -17.34091 -17.03860 -16.58225 -16.45876 -16.27053 -15.87263 -15.21202 -14.91312 -14.71737 -14.34434 -14.09263 -14.00791 -13.77130 -13.49524 -13.33855 -13.25115 -13.02291 -12.85417 -12.56455 -12.47667 -12.32249 -11.99106 -11.83189 -11.75924 -11.66780 -11.30830 -11.01197 -10.93281 -10.71894 -10.69722 -10.39854 -10.34213 -10.08784 -9.96027 -9.88252 -9.47321 -9.27144 -8.95498 -8.80500 -8.71119 -8.26939 -6.82112 -5.55950 -2.82934 2.70068 2.80696 2.98223 3.20745 3.56218 3.60965 3.62255 4.39697 4.53338 4.55377 4.73551 4.76566 4.88148 4.93489 5.05322 5.11929 5.20650 5.25683 5.34105 5.37812 5.40776 5.47648 5.54487 5.65061 5.69717 5.73801 5.74459 5.76565 5.81201 5.88413 5.93670 6.03385 6.04964 6.11607 6.13379 6.15685 6.30023 6.35836 6.52839 6.74120 6.82949 6.98014 7.09231 7.39325 7.67265 8.14072 8.20275 8.37034 8.43199 8.61890 9.73986 10.24222 10.60902 11.66733 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.004372 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.374242 B = 6402.149483 C = 7802.831389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.117 3.883 4 C -0.117 4.117 5 C -0.109 4.109 6 H 0.097 0.903 7 C 0.526 3.474 8 O -0.538 6.538 9 N -0.595 5.595 10 C 0.107 3.893 11 C -0.130 4.130 12 C -0.117 4.117 13 C 0.189 3.811 14 C 0.074 3.926 15 O -0.534 6.534 16 N -0.703 5.703 17 C -0.207 4.207 18 H 0.091 0.909 19 C -0.022 4.022 20 N -0.939 5.939 21 Si 0.903 3.097 22 H -0.297 1.297 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.116 3.884 26 C -0.120 4.120 27 C 0.522 3.478 28 O -0.546 6.546 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.023 0.977 44 H 0.350 0.650 45 H 0.383 0.617 46 H 0.251 0.749 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 16.185 9.435 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.348 5.348 3 C -0.006 4.006 4 C -0.155 4.155 5 C -0.130 4.130 6 H 0.115 0.885 7 C 0.314 3.686 8 O -0.415 6.415 9 N -0.327 5.327 10 C -0.016 4.016 11 C -0.168 4.168 12 C -0.156 4.156 13 C 0.095 3.905 14 C -0.007 4.007 15 O -0.337 6.337 16 N -0.343 5.343 17 C -0.338 4.338 18 H 0.109 0.891 19 C -0.216 4.216 20 N -0.589 5.589 21 Si 0.735 3.265 22 H -0.223 1.223 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.007 4.007 26 C -0.160 4.160 27 C 0.311 3.689 28 O -0.423 6.423 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.195 0.805 45 H 0.217 0.783 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.111 0.889 49 H 0.133 0.867 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.750 15.645 9.007 18.667 hybrid contribution 0.674 -0.877 -0.310 1.148 sum -4.076 14.768 8.698 17.617 Atomic orbital electron populations 1.21667 0.79793 1.03108 1.01957 1.47278 1.07338 1.06148 1.73998 1.21423 0.93093 0.84593 1.01501 1.21740 0.93499 0.98834 1.01475 1.21441 0.92742 0.96921 1.01943 0.88530 1.20221 0.87531 0.77290 0.83570 1.90691 1.78874 1.47726 1.24226 1.47855 1.08764 1.61044 1.15044 1.21840 0.99440 0.96766 0.83512 1.21825 0.98113 0.95236 1.01624 1.21869 0.94733 1.02196 0.96847 1.19949 0.89953 0.89134 0.91461 1.22710 0.97197 0.83152 0.97655 1.86932 1.27244 1.24437 1.95049 1.42367 1.49829 1.03423 1.38723 1.19468 1.18057 0.82339 1.13939 0.89130 1.24718 1.00308 0.97374 0.99242 1.69650 1.31811 1.33740 1.23663 0.86324 0.76976 0.86529 0.76631 1.22285 1.21716 1.21736 1.21697 0.80415 0.96110 1.02479 1.21599 0.90032 0.97283 1.07061 1.20113 0.90741 0.82575 0.75449 1.90730 1.66144 1.35731 1.49745 0.92764 0.90167 0.91464 0.91646 0.90358 0.89331 0.89602 0.91952 0.90352 0.92175 0.89138 0.90731 0.94085 0.94623 0.95908 0.80484 0.78310 0.93917 0.91749 0.88889 0.86696 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.24 59.85 0.61 1.37 16 2 N -0.61 -7.13 3.21 -182.85 -0.59 -7.72 16 3 C 0.12 0.98 6.32 -4.48 -0.03 0.95 16 4 C -0.12 -1.23 4.73 -26.60 -0.13 -1.36 16 5 C -0.11 -1.36 1.75 -91.56 -0.16 -1.52 16 6 H 0.10 0.97 6.26 -51.93 -0.33 0.65 16 7 C 0.53 8.36 6.79 -10.98 -0.07 8.29 16 8 O -0.54 -10.38 15.69 5.56 0.09 -10.29 16 9 N -0.59 -9.01 2.87 -172.76 -0.50 -9.50 16 10 C 0.11 1.36 6.27 -3.71 -0.02 1.34 16 11 C -0.13 -2.02 5.93 -26.61 -0.16 -2.17 16 12 C -0.12 -1.95 4.43 -26.69 -0.12 -2.07 16 13 C 0.19 3.47 0.68 -131.70 -0.09 3.38 16 14 C 0.07 1.27 6.09 37.15 0.23 1.50 16 15 O -0.53 -10.01 9.91 -35.23 -0.35 -10.36 16 16 N -0.70 -16.71 4.22 -47.12 -0.20 -16.91 16 17 C -0.21 -5.55 8.14 -15.06 -0.12 -5.68 16 18 H 0.09 2.44 5.29 -52.48 -0.28 2.16 16 19 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 20 N -0.94 -28.76 13.06 55.49 0.72 -28.03 16 21 Si 0.90 23.32 29.55 -169.99 -5.02 18.29 16 22 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 C 0.12 1.88 5.13 -3.71 -0.02 1.86 16 26 C -0.12 -1.85 5.29 -28.10 -0.15 -2.00 16 27 C 0.52 8.09 7.47 -11.87 -0.09 8.00 16 28 O -0.55 -10.68 16.18 5.56 0.09 -10.59 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.92 7.13 -51.93 -0.37 0.55 16 31 H 0.07 0.45 8.01 -51.93 -0.42 0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.87 5.17 -51.93 -0.27 0.60 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.79 7.53 -51.93 -0.39 1.40 16 40 H 0.07 1.45 6.98 -51.93 -0.36 1.09 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.35 4.89 9.12 45.56 0.42 5.30 16 45 H 0.38 10.17 7.65 -40.82 -0.31 9.86 16 46 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.09 1.71 7.04 -51.93 -0.37 1.35 16 49 H 0.11 2.09 8.09 -51.93 -0.42 1.67 16 50 H 0.11 1.85 7.87 -51.93 -0.41 1.44 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -36.00 384.70 -7.65 -43.66 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -7.28 Total: 14.51 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -0.41 Total: 11.15 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.56 Total: -62.16 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.17 Total: -31.24 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.00 -7.65 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484843777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.509 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds