Wall clock time and date at job start Sat Apr 11 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45758 * 117.94825 * 2 1 4 4 C 1.52924 * 110.48687 * 199.07655 * 3 2 1 5 5 C 1.53338 * 108.67222 * 309.24679 * 4 3 2 6 6 H 1.09001 * 109.67378 * 307.75604 * 5 4 3 7 7 C 1.50707 * 109.67095 * 187.26744 * 5 4 3 8 8 O 1.21279 * 119.99795 * 335.39478 * 7 5 4 9 9 N 1.34780 * 119.99708 * 155.39780 * 7 5 4 10 10 C 1.46922 * 120.63336 * 355.37023 * 9 7 5 11 11 C 1.53193 * 108.77653 * 126.36953 * 10 9 7 12 12 C 1.53033 * 109.31162 * 54.63407 * 11 10 9 13 13 C 1.53041 * 109.54169 * 298.63322 * 12 11 10 14 14 C 1.52992 * 109.52799 * 181.33812 * 13 12 11 15 15 O 1.42892 * 109.47427 * 65.08220 * 14 13 12 16 16 N 1.46507 * 109.49672 * 301.41821 * 13 12 11 17 17 C 1.36932 * 119.99910 * 299.83174 * 16 13 12 18 18 H 1.08004 * 120.00105 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00204 * 179.97438 * 17 16 13 20 20 N 1.31618 * 119.99613 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00293 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47323 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.46967 * 300.00537 * 21 19 17 24 24 H 1.48504 * 109.47228 * 60.00144 * 21 19 17 25 25 C 1.46927 * 120.62738 * 175.34585 * 9 7 5 26 26 C 1.53069 * 108.42931 * 67.53489 * 5 4 3 27 27 C 1.33349 * 117.94542 * 180.02562 * 2 1 3 28 28 O 1.21278 * 118.25007 * 357.79216 * 27 2 1 29 29 H 1.08997 * 109.47154 * 89.99677 * 1 2 3 30 30 H 1.08992 * 109.46977 * 210.00128 * 1 2 3 31 31 H 1.09003 * 109.46925 * 330.00454 * 1 2 3 32 32 H 1.08995 * 109.30223 * 78.76362 * 3 2 1 33 33 H 1.09003 * 109.29763 * 319.38662 * 3 2 1 34 34 H 1.08996 * 109.60235 * 189.48673 * 4 3 2 35 35 H 1.09004 * 109.73697 * 69.08054 * 4 3 2 36 36 H 1.09003 * 109.58271 * 246.15550 * 10 9 7 37 37 H 1.08997 * 109.58794 * 6.43725 * 10 9 7 38 38 H 1.09003 * 109.49594 * 174.58831 * 11 10 9 39 39 H 1.08999 * 109.49536 * 294.68062 * 11 10 9 40 40 H 1.09006 * 109.46117 * 178.61834 * 12 11 10 41 41 H 1.08994 * 109.46259 * 58.65655 * 12 11 10 42 42 H 1.09006 * 109.47435 * 185.08174 * 14 13 12 43 43 H 1.09000 * 109.46907 * 305.07547 * 14 13 12 44 44 H 0.96701 * 114.00141 * 180.02562 * 15 14 13 45 45 H 0.96995 * 119.99751 * 119.83232 * 16 13 12 46 46 H 0.97001 * 120.00004 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.58924 * 113.84282 * 25 9 7 48 48 H 1.09006 * 109.70282 * 353.48411 * 25 9 7 49 49 H 1.08992 * 109.40190 * 71.22106 * 26 5 4 50 50 H 1.08998 * 109.40084 * 190.97023 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 -0.4682 5 6 4.2492 -0.0014 0.3396 6 1 4.1093 0.1817 1.4050 7 6 5.7217 -0.0625 0.0245 8 8 6.1337 0.3641 -1.0334 9 7 6.5807 -0.5913 0.9185 10 6 6.1127 -1.0194 2.2437 11 6 6.5368 -2.4739 2.4704 12 6 8.0485 -2.5977 2.2675 13 6 8.4058 -2.2087 0.8311 14 6 9.9129 -2.3646 0.6189 15 8 10.2702 -3.7432 0.7347 16 7 7.6879 -3.0784 -0.1040 17 6 7.8890 -4.4325 -0.0717 18 1 8.5766 -4.8594 0.6435 19 6 7.2084 -5.2567 -0.9574 20 7 6.3700 -4.7365 -1.8285 21 14 7.4822 -7.1039 -0.9128 22 1 6.6440 -7.7539 -1.9522 23 1 8.9136 -7.3986 -1.1762 24 1 7.1071 -7.6278 0.4252 25 6 8.0029 -0.7512 0.5859 26 6 3.5839 -1.3241 -0.0487 27 6 2.0899 -1.1780 -0.0005 28 8 1.4159 -2.1854 0.0402 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 2.1399 1.6998 1.0090 33 1 1.6271 1.9718 -0.6697 34 1 4.1385 2.0563 -0.3044 35 1 3.6127 0.8738 -1.5285 36 1 6.5575 -0.3853 3.0107 37 1 5.0265 -0.9418 2.2903 38 1 6.2802 -2.7735 3.4865 39 1 6.0202 -3.1185 1.7592 40 1 8.3566 -3.6269 2.4522 41 1 8.5637 -1.9344 2.9622 42 1 10.1795 -2.0023 -0.3741 43 1 10.4476 -1.7860 1.3722 44 1 11.2136 -3.9168 0.6117 45 1 7.0701 -2.6951 -0.7460 46 1 5.8947 -5.3124 -2.4477 47 1 8.6019 -0.0953 1.2176 48 1 8.1660 -0.4983 -0.4618 49 1 3.8880 -1.5997 -1.0583 50 1 3.8943 -2.1035 0.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484843777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:55 Heat of formation + Delta-G solvation = -121.151721 kcal Electronic energy + Delta-G solvation = -32453.053313 eV Core-core repulsion = 28286.723089 eV Total energy + Delta-G solvation = -4166.330224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00680 -40.98577 -39.38725 -37.43722 -37.10576 -35.59306 -35.08125 -33.64720 -32.67070 -30.89697 -30.49205 -28.56193 -26.76822 -26.56620 -25.60676 -25.28402 -23.64050 -23.04213 -20.61450 -19.86294 -19.52392 -19.16157 -18.25207 -17.90285 -17.61053 -17.53855 -16.95852 -16.65746 -16.27492 -16.03229 -15.81929 -15.48536 -15.33654 -15.15295 -14.83300 -14.76652 -14.56998 -14.35067 -14.01366 -13.67637 -13.56969 -13.44808 -13.35660 -13.21245 -12.83150 -12.80879 -12.71366 -12.66341 -12.58599 -12.12489 -12.06168 -11.96041 -11.71999 -11.68157 -11.49864 -11.30315 -11.17415 -10.75440 -10.52757 -10.48784 -9.74943 -9.51436 -8.84500 -7.76610 -5.00256 1.45621 1.46369 1.47755 1.53589 1.56538 2.01217 2.06330 2.65748 3.31659 3.44874 3.58788 3.63505 3.65912 3.72837 3.79254 3.97266 4.09073 4.13244 4.22856 4.28632 4.36259 4.42836 4.48411 4.51479 4.54331 4.58796 4.63551 4.65815 4.68108 4.77984 4.80540 4.84099 4.91241 4.96451 4.98178 5.02550 5.06519 5.22019 5.33980 5.42156 5.57651 5.60658 5.72032 5.94325 6.34872 6.44348 6.48346 7.05243 7.15982 7.20478 7.52561 8.24580 8.47046 9.47184 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.004372 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.374242 B = 6402.149483 C = 7802.831389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.603 5.603 3 C 0.115 3.885 4 C -0.115 4.115 5 C -0.096 4.096 6 H 0.134 0.866 7 C 0.518 3.482 8 O -0.580 6.580 9 N -0.596 5.596 10 C 0.109 3.891 11 C -0.128 4.128 12 C -0.109 4.109 13 C 0.174 3.826 14 C 0.075 3.925 15 O -0.565 6.565 16 N -0.713 5.713 17 C -0.172 4.172 18 H 0.094 0.906 19 C -0.096 4.096 20 N -0.980 5.980 21 Si 0.955 3.045 22 H -0.310 1.310 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.120 3.880 26 C -0.111 4.111 27 C 0.520 3.480 28 O -0.599 6.599 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.069 0.931 44 H 0.373 0.627 45 H 0.363 0.637 46 H 0.237 0.763 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 19.598 12.886 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.335 5.335 3 C -0.006 4.006 4 C -0.153 4.153 5 C -0.117 4.117 6 H 0.152 0.848 7 C 0.307 3.693 8 O -0.460 6.460 9 N -0.327 5.327 10 C -0.013 4.013 11 C -0.167 4.167 12 C -0.148 4.148 13 C 0.083 3.917 14 C -0.006 4.006 15 O -0.370 6.370 16 N -0.351 5.351 17 C -0.304 4.304 18 H 0.112 0.888 19 C -0.285 4.285 20 N -0.635 5.635 21 Si 0.788 3.212 22 H -0.238 1.238 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.003 4.003 26 C -0.152 4.152 27 C 0.309 3.691 28 O -0.481 6.481 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.221 0.779 45 H 0.195 0.805 46 H 0.046 0.954 47 H 0.126 0.874 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.270 19.117 12.538 23.257 hybrid contribution 0.660 -1.842 -1.308 2.354 sum -3.609 17.275 11.231 20.918 Atomic orbital electron populations 1.21858 0.78266 1.04201 1.02530 1.47386 1.08459 1.06062 1.71551 1.21757 0.91288 0.83078 1.04444 1.21753 0.95308 0.98684 0.99519 1.21452 0.90123 0.95750 1.04424 0.84818 1.20820 0.88863 0.76645 0.82942 1.90668 1.79761 1.49715 1.25852 1.48006 1.08408 1.60356 1.15955 1.22049 1.00936 0.95250 0.83024 1.21763 0.96823 0.96511 1.01556 1.21762 0.95863 1.01224 0.96000 1.20421 0.90338 0.89693 0.91249 1.22641 0.96340 0.83049 0.98533 1.86803 1.29539 1.25553 1.95138 1.42527 1.50032 1.03086 1.39483 1.19733 1.15340 0.83827 1.11507 0.88816 1.25358 1.01814 1.00785 1.00555 1.69831 1.34132 1.34137 1.25372 0.85435 0.76675 0.82892 0.76172 1.23774 1.21060 1.21186 1.21635 0.81791 0.95064 1.01813 1.21354 0.91054 0.98702 1.04066 1.20000 0.90277 0.83328 0.75512 1.90700 1.66924 1.37836 1.52629 0.92495 0.92343 0.87037 0.87798 0.87371 0.87092 0.92435 0.87524 0.88715 0.89580 0.94573 0.93827 0.89859 0.95864 0.91308 0.77933 0.80535 0.95439 0.87429 0.91863 0.90908 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.24 127.77 1.31 2.58 16 2 N -0.60 -12.92 3.21 -851.61 -2.73 -15.65 16 3 C 0.12 1.47 6.32 86.49 0.55 2.02 16 4 C -0.11 -2.17 4.73 30.68 0.15 -2.02 16 5 C -0.10 -2.30 1.75 -11.40 -0.02 -2.32 16 6 H 0.13 2.19 6.26 -2.39 -0.01 2.17 16 7 C 0.52 16.31 6.79 87.66 0.60 16.91 16 8 O -0.58 -22.98 15.69 -3.02 -0.05 -23.03 16 9 N -0.60 -17.07 2.87 -818.89 -2.35 -19.42 16 10 C 0.11 2.39 6.27 86.36 0.54 2.93 16 11 C -0.13 -3.76 5.93 30.67 0.18 -3.58 16 12 C -0.11 -3.38 4.43 30.62 0.14 -3.25 16 13 C 0.17 6.20 0.68 3.68 0.00 6.20 16 14 C 0.07 2.41 6.09 71.98 0.44 2.85 16 15 O -0.56 -20.38 9.91 -148.98 -1.48 -21.86 16 16 N -0.71 -35.00 4.22 -302.98 -1.28 -36.27 16 17 C -0.17 -9.49 8.14 84.04 0.68 -8.80 16 18 H 0.09 5.11 5.29 -2.91 -0.02 5.09 16 19 C -0.10 -5.76 5.50 84.86 0.47 -5.29 16 20 N -0.98 -64.03 13.06 21.65 0.28 -63.75 16 21 Si 0.96 49.99 29.55 68.60 2.03 52.02 16 22 H -0.31 -16.80 7.11 99.48 0.71 -16.09 16 23 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 25 C 0.12 3.68 5.13 86.36 0.44 4.12 16 26 C -0.11 -3.65 5.29 29.71 0.16 -3.49 16 27 C 0.52 16.56 7.47 87.72 0.66 17.22 16 28 O -0.60 -24.80 16.18 -3.02 -0.05 -24.84 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.31 7.13 -2.39 -0.02 1.29 16 31 H 0.11 0.97 8.01 -2.39 -0.02 0.95 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.78 5.17 -2.39 -0.01 1.77 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.46 7.53 -2.39 -0.02 1.44 16 40 H 0.04 1.63 6.98 -2.38 -0.02 1.61 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.37 9.74 9.12 -74.06 -0.68 9.06 16 45 H 0.36 20.49 7.65 -92.71 -0.71 19.78 16 46 H 0.24 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.06 2.34 7.04 -2.38 -0.02 2.33 16 49 H 0.07 2.98 8.09 -2.39 -0.02 2.96 16 50 H 0.09 3.29 7.87 -2.39 -0.02 3.27 16 Total: -1.00 -88.12 384.70 0.24 -87.88 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.42 Total: 38.86 kcal Atomic # 6 Polarization: 19.79 SS G_CDS: 6.28 Total: 26.07 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -6.08 Total: -135.09 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: -1.57 Total: -69.73 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.03 Total: 52.02 kcal Total: -88.12 0.24 -87.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484843777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.273 kcal (2) G-P(sol) polarization free energy of solvation -88.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds