Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99939 * 2 1 4 4 C 1.50696 * 109.47434 * 293.95500 * 3 2 1 5 5 O 1.21297 * 119.99684 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00105 * 180.02562 * 4 3 2 7 7 C 1.37095 * 119.99837 * 180.02562 * 6 4 3 8 8 H 1.08002 * 120.00003 * 359.97438 * 7 6 4 9 9 C 1.38945 * 120.00186 * 180.02562 * 7 6 4 10 10 N 1.31412 * 120.00011 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00510 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46880 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47049 * 119.99457 * 11 9 7 14 14 H 1.48498 * 109.47194 * 239.99751 * 11 9 7 15 15 C 1.46905 * 110.99961 * 123.95276 * 2 1 3 16 16 C 1.52998 * 109.47016 * 164.01503 * 15 2 1 17 17 H 1.09003 * 109.47188 * 58.51696 * 16 15 2 18 18 O 1.42901 * 109.47191 * 298.52011 * 16 15 2 19 19 C 1.53001 * 109.47180 * 178.51919 * 16 15 2 20 20 N 1.46495 * 109.47201 * 184.99740 * 19 16 15 21 21 C 1.46501 * 119.99809 * 90.00280 * 20 19 16 22 22 C 1.34779 * 120.00323 * 270.00304 * 20 19 16 23 23 O 1.21273 * 119.99815 * 359.97438 * 22 20 19 24 24 C 1.50701 * 119.99774 * 180.02562 * 22 20 19 25 25 H 1.08997 * 115.55100 * 325.66369 * 24 22 20 26 26 C 1.53001 * 117.49943 * 111.38025 * 24 22 20 27 27 C 1.52994 * 117.49285 * 179.97438 * 24 22 20 28 28 C 1.52994 * 138.58580 * 121.62052 * 27 24 22 29 29 C 1.52998 * 138.59299 * 23.40524 * 27 24 22 30 30 H 1.08993 * 109.46804 * 302.03142 * 1 2 3 31 31 H 1.08994 * 109.46749 * 62.03009 * 1 2 3 32 32 H 1.08998 * 109.46540 * 182.03285 * 1 2 3 33 33 H 1.09003 * 109.46849 * 53.95333 * 3 2 1 34 34 H 1.08996 * 109.47396 * 173.94977 * 3 2 1 35 35 H 0.96993 * 119.99918 * 359.97438 * 6 4 3 36 36 H 0.97002 * 120.00279 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46681 * 44.01440 * 15 2 1 38 38 H 1.08997 * 109.47238 * 284.01710 * 15 2 1 39 39 H 0.96697 * 114.00394 * 300.00113 * 18 16 15 40 40 H 1.09007 * 109.46697 * 65.00160 * 19 16 15 41 41 H 1.08995 * 109.46993 * 305.00449 * 19 16 15 42 42 H 1.09003 * 109.47430 * 89.99891 * 21 20 19 43 43 H 1.08997 * 109.47208 * 329.99979 * 21 20 19 44 44 H 1.09001 * 109.47065 * 210.00114 * 21 20 19 45 45 H 1.08992 * 117.49951 * 214.97563 * 26 24 22 46 46 H 1.09006 * 117.49931 * 359.97438 * 26 24 22 47 47 H 1.09000 * 117.50313 * 336.59251 * 28 27 24 48 48 H 1.09005 * 117.50042 * 121.61457 * 28 27 24 49 49 H 1.08996 * 117.49674 * 238.37685 * 29 27 24 50 50 H 1.08993 * 117.49746 * 23.37448 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0054 1.4453 -2.1411 6 7 2.0189 3.3199 -1.5236 7 6 1.6923 3.9348 -2.7046 8 1 1.1293 3.3992 -3.4546 9 6 2.0865 5.2467 -2.9371 10 7 2.7720 5.8983 -2.0247 11 14 1.6421 6.0844 -4.5466 12 1 0.8739 5.1421 -5.3993 13 1 0.8158 7.2862 -4.2674 14 1 2.8838 6.4904 -5.2526 15 6 1.9955 -0.7660 1.1376 16 6 3.4729 -1.0838 0.8985 17 1 4.0283 -0.1548 0.7700 18 8 3.6036 -1.8835 -0.2786 19 6 4.0308 -1.8496 2.0999 20 7 5.4714 -2.0497 1.9252 21 6 6.4164 -1.0521 2.4333 22 6 5.9276 -3.1515 1.2971 23 8 5.1454 -3.9775 0.8770 24 6 7.4097 -3.3575 1.1180 25 1 7.9943 -2.4516 0.9581 26 6 8.0657 -4.4921 1.9075 27 6 7.8641 -4.6283 0.3975 28 6 8.6778 -5.0181 -0.8381 29 6 7.3034 -5.6460 -0.5980 30 1 -0.3633 0.5450 0.8712 31 1 -0.3632 0.4820 -0.9076 32 1 -0.3632 -1.0270 0.0365 33 1 1.5611 1.9273 0.8309 34 1 3.0797 1.3445 0.1083 35 1 2.5243 3.8010 -0.8499 36 1 3.0469 6.8143 -2.1868 37 1 1.4357 -1.6957 1.2398 38 1 1.8933 -0.1782 2.0499 39 1 3.1336 -2.7275 -0.2350 40 1 3.5359 -2.8180 2.1751 41 1 3.8510 -1.2780 3.0103 42 1 6.6909 -1.3006 3.4585 43 1 5.9515 -0.0665 2.4104 44 1 7.3099 -1.0470 1.8090 45 1 9.0821 -4.3328 2.2673 46 1 7.4254 -5.0894 2.5567 47 1 8.7623 -4.2823 -1.6379 48 1 9.5532 -5.6496 -0.6857 49 1 7.2745 -6.6904 -0.2875 50 1 6.4833 -5.3233 -1.2393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486351007.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -39.736792 kcal Electronic energy + Delta-G solvation = -29910.899164 eV Core-core repulsion = 25748.099357 eV Total energy + Delta-G solvation = -4162.799808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.40630 -38.86448 -38.07724 -37.18236 -35.71774 -35.08756 -33.77622 -32.88294 -31.20250 -30.58701 -28.02620 -27.50318 -26.49155 -24.75826 -23.97077 -22.59963 -22.27114 -21.17169 -20.18784 -19.11086 -18.72244 -17.81804 -17.53195 -16.77102 -16.20274 -15.99563 -15.61204 -15.31113 -15.24263 -15.19054 -14.62003 -14.48422 -14.23224 -14.22413 -13.72632 -13.50307 -13.42158 -13.23695 -12.84238 -12.71129 -12.49754 -12.04744 -11.99276 -11.90289 -11.67818 -11.66957 -11.47032 -11.34207 -11.27910 -11.00215 -10.75062 -10.47274 -10.35079 -10.31553 -10.23709 -10.18957 -10.12160 -9.75420 -9.44910 -8.72166 -8.36563 -7.93229 -7.76425 -6.38368 -3.78592 2.34561 2.69783 3.18703 3.28889 3.36615 3.45144 3.49474 3.94213 3.97941 4.03179 4.25190 4.30961 4.51026 4.60559 4.71171 4.73044 4.88443 4.97999 5.09488 5.12113 5.16802 5.19752 5.25256 5.26489 5.31099 5.34668 5.40462 5.42824 5.44066 5.47621 5.57730 5.63642 5.68551 5.74138 5.77706 5.93598 5.99229 6.02340 6.06267 6.25781 6.32768 6.58930 7.17799 7.30826 7.42469 7.59054 7.97219 8.09271 8.11030 8.66466 9.22548 9.58836 10.11454 10.79759 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002302 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.087018 B =12162.727366 C =12942.577036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.447 3.553 5 O -0.574 6.574 6 N -0.567 5.567 7 C -0.295 4.295 8 H 0.103 0.897 9 C 0.020 3.980 10 N -0.904 5.904 11 Si 0.928 3.072 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.024 3.976 16 C 0.097 3.903 17 H 0.096 0.904 18 O -0.533 6.533 19 C 0.084 3.916 20 N -0.610 5.610 21 C 0.077 3.923 22 C 0.549 3.451 23 O -0.527 6.527 24 C -0.141 4.141 25 H 0.124 0.876 26 C -0.101 4.101 27 C -0.201 4.201 28 C -0.130 4.130 29 C -0.112 4.112 30 H 0.013 0.987 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.391 0.609 36 H 0.270 0.730 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.372 0.628 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.127 -17.443 14.638 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.230 5.230 3 C -0.086 4.086 4 C 0.232 3.768 5 O -0.458 6.458 6 N -0.204 5.204 7 C -0.425 4.425 8 H 0.121 0.879 9 C -0.181 4.181 10 N -0.546 5.546 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.105 4.105 16 C 0.035 3.965 17 H 0.113 0.887 18 O -0.337 6.337 19 C -0.040 4.040 20 N -0.343 5.343 21 C -0.066 4.066 22 C 0.337 3.663 23 O -0.402 6.402 24 C -0.162 4.162 25 H 0.142 0.858 26 C -0.138 4.138 27 C -0.202 4.202 28 C -0.167 4.167 29 C -0.149 4.149 30 H 0.031 0.969 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.224 0.776 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.219 0.781 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.113 0.887 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.853 -17.817 13.205 24.690 hybrid contribution -0.387 1.165 0.822 1.478 sum 10.466 -16.652 14.028 24.158 Atomic orbital electron populations 1.22547 0.86592 1.01070 1.02177 1.61453 1.08273 1.12605 1.40708 1.21908 1.00587 0.88968 0.97099 1.19716 0.85286 0.82839 0.88917 1.90486 1.43734 1.64532 1.47026 1.41862 1.49659 1.10809 1.18083 1.19746 1.32593 0.95396 0.94731 0.87898 1.25245 0.96934 0.96667 0.99211 1.69620 1.38366 1.12180 1.34435 0.85812 0.78198 0.78995 0.81421 1.19223 1.20824 1.20772 1.22803 0.96357 0.98898 0.92459 1.22284 0.94223 0.94561 0.85384 0.88655 1.86646 1.75808 1.33766 1.37469 1.22230 0.80822 1.02132 0.98795 1.47598 1.06547 1.21844 1.58297 1.21853 0.93483 0.92147 0.99139 1.19542 0.89129 0.80732 0.76863 1.90647 1.57657 1.43786 1.48127 1.22008 0.93676 0.94344 1.06189 0.85806 1.22626 1.01214 0.98292 0.91704 1.21138 1.07942 0.99245 0.91840 1.22775 0.95382 1.02543 0.96015 1.22603 0.96589 0.96537 0.99146 0.96892 0.88455 0.92363 0.93716 0.89682 0.77608 0.92018 0.90497 0.94376 0.78146 0.89495 0.89828 0.92462 0.90811 0.90782 0.87708 0.88265 0.88395 0.88406 0.88656 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.19 60.07 0.55 0.95 16 2 N -0.51 -8.75 4.35 -244.37 -1.06 -9.81 16 3 C 0.05 0.85 5.30 -4.98 -0.03 0.82 16 4 C 0.45 10.90 7.52 -10.99 -0.08 10.82 16 5 O -0.57 -15.99 13.88 5.54 0.08 -15.91 16 6 N -0.57 -14.69 5.29 -10.97 -0.06 -14.75 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 11 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.02 0.31 4.63 -3.82 -0.02 0.29 16 16 C 0.10 1.22 3.23 -26.73 -0.09 1.13 16 17 H 0.10 1.30 6.56 -51.93 -0.34 0.96 16 18 O -0.53 -8.47 12.10 -42.95 -0.52 -8.99 16 19 C 0.08 0.82 5.11 -4.04 -0.02 0.80 16 20 N -0.61 -6.13 2.86 -181.57 -0.52 -6.64 16 21 C 0.08 0.53 10.26 59.85 0.61 1.14 16 22 C 0.55 6.58 7.08 -10.98 -0.08 6.51 16 23 O -0.53 -7.85 14.80 -2.15 -0.03 -7.88 16 24 C -0.14 -1.35 5.29 -91.77 -0.49 -1.84 16 25 H 0.12 0.99 6.44 -51.93 -0.33 0.66 16 26 C -0.10 -0.79 10.23 -26.76 -0.27 -1.06 16 27 C -0.20 -1.96 5.05 -154.54 -0.78 -2.74 16 28 C -0.13 -1.08 10.53 -26.73 -0.28 -1.36 16 29 C -0.11 -1.10 10.16 -26.73 -0.27 -1.37 16 30 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 31 H 0.10 1.99 5.92 -51.93 -0.31 1.68 16 32 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 33 H 0.04 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.09 1.46 6.38 -51.93 -0.33 1.13 16 35 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 38 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 39 H 0.37 5.27 8.75 45.56 0.40 5.67 16 40 H 0.09 0.90 7.42 -51.92 -0.39 0.52 16 41 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 44 H 0.07 0.46 6.00 -51.93 -0.31 0.15 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 410.04 15.07 6.18 6.18 Total: -1.00 -35.44 410.04 -9.04 -44.48 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -7.32 Total: 15.08 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.48 Total: 6.03 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.92 Total: -55.36 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.47 Total: -32.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.44 -9.04 -44.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486351007.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.742 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds