Wall clock time and date at job start Sat Apr 11 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00165 * 2 1 4 4 O 1.21279 * 120.00442 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99859 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47142 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.98878 * 306.08712 * 6 5 3 8 8 C 1.54098 * 109.87723 * 185.00152 * 6 5 3 9 9 C 1.54813 * 104.30472 * 238.48010 * 8 6 5 10 10 C 1.55227 * 101.98357 * 339.26359 * 9 8 6 11 11 O 1.43744 * 109.87631 * 67.17016 * 6 5 3 12 12 C 1.46502 * 120.00320 * 180.02562 * 2 1 3 13 13 C 1.53777 * 113.61254 * 39.12790 * 12 2 1 14 14 C 1.53961 * 87.02040 * 220.05375 * 13 12 2 15 15 N 1.46894 * 113.66563 * 139.93460 * 14 13 12 16 16 C 1.46911 * 110.99997 * 107.44229 * 15 14 13 17 17 C 1.50700 * 109.46990 * 179.97438 * 16 15 14 18 18 O 1.21290 * 120.00387 * 359.97438 * 17 16 15 19 19 N 1.34770 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00131 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99945 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00069 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00033 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99851 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47382 * 59.99687 * 24 22 20 26 26 H 1.48506 * 109.46658 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47121 * 299.99442 * 24 22 20 28 28 C 1.53774 * 87.11036 * 25.36415 * 14 13 12 29 29 H 1.08998 * 109.47389 * 89.99672 * 1 2 3 30 30 H 1.09000 * 109.46934 * 209.99761 * 1 2 3 31 31 H 1.09001 * 109.46739 * 329.99011 * 1 2 3 32 32 H 1.09000 * 109.46591 * 59.99748 * 5 3 2 33 33 H 1.08996 * 109.47192 * 299.99867 * 5 3 2 34 34 H 1.09002 * 110.48969 * 357.22346 * 8 6 5 35 35 H 1.09002 * 110.48612 * 119.74013 * 8 6 5 36 36 H 1.08999 * 110.90868 * 97.38351 * 9 8 6 37 37 H 1.09003 * 110.91016 * 220.99202 * 9 8 6 38 38 H 1.09002 * 110.51777 * 278.38206 * 10 9 8 39 39 H 1.09000 * 110.77540 * 155.50397 * 10 9 8 40 40 H 1.08993 * 112.85414 * 170.33222 * 12 2 1 41 41 H 1.09002 * 113.61735 * 334.56944 * 13 12 2 42 42 H 1.09002 * 113.61360 * 105.47869 * 13 12 2 43 43 H 1.08995 * 113.53709 * 270.81301 * 14 13 12 44 44 H 1.00900 * 111.00486 * 343.48894 * 15 14 13 45 45 H 1.08993 * 109.46810 * 299.99695 * 16 15 14 46 46 H 1.08993 * 109.46983 * 60.00178 * 16 15 14 47 47 H 0.97003 * 120.00238 * 359.97438 * 19 17 16 48 48 H 0.96996 * 119.99881 * 180.02562 * 23 22 20 49 49 H 1.08997 * 113.61905 * 220.09089 * 28 14 13 50 50 H 1.09006 * 113.69443 * 89.19794 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6353 0.0011 7 1 3.0804 3.5260 0.8288 8 6 1.6228 4.9716 0.1280 9 6 2.0314 5.7643 -1.1374 10 6 3.3485 5.0545 -1.5511 11 8 3.0959 3.6665 -1.2448 12 6 2.1976 -1.2687 -0.0006 13 6 1.5590 -2.3483 -0.8902 14 6 1.9074 -3.3558 0.2206 15 7 0.8573 -4.3543 0.4616 16 6 1.2586 -5.6733 -0.0458 17 6 0.1591 -6.6692 0.2193 18 8 -0.8584 -6.3153 0.7766 19 7 0.3065 -7.9532 -0.1627 20 6 -0.6939 -8.8592 0.0780 21 1 -1.5999 -8.5440 0.5742 22 6 -0.5418 -10.1831 -0.3155 23 7 0.5609 -10.5667 -0.9188 24 14 -1.9052 -11.4174 0.0119 25 1 -3.1457 -10.9788 -0.6765 26 1 -1.4997 -12.7506 -0.5014 27 1 -2.1542 -11.5038 1.4734 28 6 1.8675 -2.1711 1.2002 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 0.7591 2.5298 0.8908 33 1 0.7584 2.5303 -0.8891 34 1 0.5464 4.8007 0.1402 35 1 1.9342 5.5023 1.0278 36 1 1.2763 5.6678 -1.9175 37 1 2.2105 6.8127 -0.8988 38 1 4.1861 5.4310 -0.9638 39 1 3.5393 5.1840 -2.6164 40 1 3.2667 -1.1401 -0.1692 41 1 0.4873 -2.2147 -1.0380 42 1 2.0976 -2.5209 -1.8221 43 1 2.8972 -3.7989 0.1115 44 1 -0.0193 -4.0623 0.0562 45 1 1.4409 -5.6098 -1.1185 46 1 2.1693 -5.9951 0.4591 47 1 1.1201 -8.2363 -0.6087 48 1 0.6669 -11.4908 -1.1938 49 1 2.6547 -2.2006 1.9535 50 1 0.8809 -1.9878 1.6259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486455016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:25 Heat of formation + Delta-G solvation = -92.251147 kcal Electronic energy + Delta-G solvation = -28913.023332 eV Core-core repulsion = 24747.946331 eV Total energy + Delta-G solvation = -4165.077001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.70307 -39.71854 -38.57140 -37.91008 -35.19864 -33.99899 -33.12682 -32.57887 -31.81342 -31.18381 -27.57013 -27.24784 -26.46807 -25.74479 -24.33583 -23.21282 -22.35237 -21.33337 -20.02153 -19.36196 -18.93784 -17.86274 -17.48286 -16.94339 -16.47029 -16.19907 -16.03911 -15.71616 -15.43702 -15.19833 -14.72121 -14.48054 -14.17293 -14.03818 -13.89760 -13.51109 -13.27205 -13.22225 -12.97708 -12.78934 -12.55470 -12.44170 -12.36402 -12.12104 -11.97242 -11.72308 -11.61643 -11.54148 -11.51334 -11.15772 -11.10315 -11.03636 -10.92098 -10.67921 -10.43907 -10.20679 -9.98988 -9.84155 -9.49674 -8.77227 -8.43537 -8.01566 -7.94526 -6.41107 -3.82065 2.47829 2.76884 3.20411 3.26126 3.30475 3.49310 3.91614 4.07256 4.11392 4.16070 4.32477 4.37923 4.49086 4.55242 4.58087 4.60127 4.78773 4.83354 4.85650 4.90561 4.94532 5.09163 5.15794 5.19892 5.24183 5.24941 5.28078 5.34237 5.41701 5.45329 5.52214 5.56421 5.63131 5.66757 5.68295 5.82170 5.84031 5.98514 6.02829 6.08380 6.29400 6.44434 6.60343 7.20686 7.27442 7.55371 7.66429 8.03562 8.06629 8.61807 9.18191 9.54922 10.06352 10.76515 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.001525 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.481154 B =18351.962952 C =18594.932144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.606 5.606 3 C 0.515 3.485 4 O -0.530 6.530 5 C -0.140 4.140 6 C 0.092 3.908 7 H 0.076 0.924 8 C -0.154 4.154 9 C -0.156 4.156 10 C 0.043 3.957 11 O -0.359 6.359 12 C 0.121 3.879 13 C -0.179 4.179 14 C 0.072 3.928 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.137 4.137 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.350 0.650 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.072 0.928 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 30.877 -0.961 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.339 5.339 3 C 0.303 3.697 4 O -0.405 6.405 5 C -0.180 4.180 6 C 0.034 3.966 7 H 0.094 0.906 8 C -0.192 4.192 9 C -0.193 4.193 10 C -0.034 4.034 11 O -0.278 6.278 12 C 0.018 3.982 13 C -0.219 4.219 14 C -0.040 4.040 15 N -0.285 5.285 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.177 4.177 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.171 0.829 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.760 30.573 -0.137 30.804 hybrid contribution -0.430 -0.606 -1.031 1.271 sum 3.330 29.967 -1.168 30.174 Atomic orbital electron populations 1.21817 0.79565 1.03592 1.02037 1.47834 1.06832 1.05752 1.73493 1.20550 0.88136 0.85170 0.75884 1.90714 1.13837 1.87173 1.48819 1.21966 0.98933 0.92271 1.04809 1.22472 0.92594 0.93026 0.88545 0.90620 1.23039 1.01508 0.95649 0.98973 1.23172 0.98368 0.99991 0.97791 1.23594 0.96381 0.82063 1.01353 1.89024 1.75957 1.24068 1.38740 1.22489 0.97710 0.80803 0.97244 1.24234 1.01839 0.96865 0.99008 1.22850 0.96378 0.90573 0.94179 1.60018 1.04747 1.00734 1.62992 1.21726 0.98691 0.89893 0.98007 1.19830 0.89037 0.83519 0.85049 1.90514 1.30828 1.78956 1.46639 1.41861 1.18862 1.06941 1.52313 1.19658 0.98403 0.88702 1.36281 0.87983 1.25262 0.97809 0.97992 0.96829 1.69604 1.25958 1.18636 1.40084 0.85915 0.80483 0.78906 0.78886 1.19944 1.20977 1.19882 1.23537 1.02908 0.94220 0.96990 0.92447 0.90165 0.91050 0.87724 0.88196 0.90195 0.90367 0.90482 0.90217 0.92260 0.89060 0.86360 0.89285 0.90993 0.88295 0.82941 0.93760 0.89550 0.77441 0.91819 0.90928 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 8.84 59.85 0.53 1.04 16 2 N -0.61 -6.04 3.08 -173.00 -0.53 -6.57 16 3 C 0.51 5.81 7.58 -10.98 -0.08 5.73 16 4 O -0.53 -8.13 14.99 -5.74 -0.09 -8.21 16 5 C -0.14 -1.04 3.74 -27.88 -0.10 -1.15 16 6 C 0.09 0.77 2.93 -26.16 -0.08 0.69 16 7 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 8 C -0.15 -0.79 6.63 -25.20 -0.17 -0.96 16 9 C -0.16 -0.77 7.17 -24.60 -0.18 -0.95 16 10 C 0.04 0.30 7.72 38.34 0.30 0.60 16 11 O -0.36 -3.91 10.58 -46.53 -0.49 -4.40 16 12 C 0.12 1.33 4.21 -67.12 -0.28 1.05 16 13 C -0.18 -1.91 7.16 -25.83 -0.18 -2.09 16 14 C 0.07 0.88 4.18 -66.81 -0.28 0.60 16 15 N -0.65 -10.30 6.24 -107.04 -0.67 -10.97 16 16 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 17 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 18 O -0.58 -15.82 15.78 5.55 0.09 -15.74 16 19 N -0.56 -14.31 5.29 -10.97 -0.06 -14.37 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 28 C -0.14 -1.54 7.41 -25.92 -0.19 -1.74 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.59 6.33 -51.93 -0.33 0.26 16 31 H 0.07 0.34 6.44 -51.93 -0.33 0.00 16 32 H 0.10 0.50 7.40 -51.93 -0.38 0.12 16 33 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.08 0.31 7.70 -51.93 -0.40 -0.09 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.12 1.47 7.21 -51.93 -0.37 1.09 16 41 H 0.09 0.91 6.50 -51.93 -0.34 0.57 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.16 7.87 -51.93 -0.41 0.75 16 44 H 0.35 5.61 7.90 -39.29 -0.31 5.30 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 1.03 6.82 -51.93 -0.35 0.68 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -34.83 401.47 -9.20 -44.03 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -8.13 Total: 12.08 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.08 Total: 5.89 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.54 Total: -55.74 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.49 Total: -28.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.83 -9.20 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486455016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.217 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds