Wall clock time and date at job start Sat Apr 11 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00165 * 2 1 4 4 O 1.21279 * 120.00442 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99859 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47142 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.98878 * 306.08712 * 6 5 3 8 8 C 1.54098 * 109.87723 * 185.00152 * 6 5 3 9 9 C 1.54813 * 104.30472 * 238.48010 * 8 6 5 10 10 C 1.55227 * 101.98357 * 339.26359 * 9 8 6 11 11 O 1.43744 * 109.87631 * 67.17016 * 6 5 3 12 12 C 1.46502 * 120.00320 * 180.02562 * 2 1 3 13 13 C 1.53777 * 113.61254 * 39.12790 * 12 2 1 14 14 C 1.53961 * 87.02040 * 220.05375 * 13 12 2 15 15 N 1.46894 * 113.66563 * 139.93460 * 14 13 12 16 16 C 1.46911 * 110.99997 * 107.44229 * 15 14 13 17 17 C 1.50700 * 109.46990 * 179.97438 * 16 15 14 18 18 O 1.21290 * 120.00387 * 359.97438 * 17 16 15 19 19 N 1.34770 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00131 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99945 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00069 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00033 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99851 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47382 * 59.99687 * 24 22 20 26 26 H 1.48506 * 109.46658 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47121 * 299.99442 * 24 22 20 28 28 C 1.53774 * 87.11036 * 25.36415 * 14 13 12 29 29 H 1.08998 * 109.47389 * 89.99672 * 1 2 3 30 30 H 1.09000 * 109.46934 * 209.99761 * 1 2 3 31 31 H 1.09001 * 109.46739 * 329.99011 * 1 2 3 32 32 H 1.09000 * 109.46591 * 59.99748 * 5 3 2 33 33 H 1.08996 * 109.47192 * 299.99867 * 5 3 2 34 34 H 1.09002 * 110.48969 * 357.22346 * 8 6 5 35 35 H 1.09002 * 110.48612 * 119.74013 * 8 6 5 36 36 H 1.08999 * 110.90868 * 97.38351 * 9 8 6 37 37 H 1.09003 * 110.91016 * 220.99202 * 9 8 6 38 38 H 1.09002 * 110.51777 * 278.38206 * 10 9 8 39 39 H 1.09000 * 110.77540 * 155.50397 * 10 9 8 40 40 H 1.08993 * 112.85414 * 170.33222 * 12 2 1 41 41 H 1.09002 * 113.61735 * 334.56944 * 13 12 2 42 42 H 1.09002 * 113.61360 * 105.47869 * 13 12 2 43 43 H 1.08995 * 113.53709 * 270.81301 * 14 13 12 44 44 H 1.00900 * 111.00486 * 343.48894 * 15 14 13 45 45 H 1.08993 * 109.46810 * 299.99695 * 16 15 14 46 46 H 1.08993 * 109.46983 * 60.00178 * 16 15 14 47 47 H 0.97003 * 120.00238 * 359.97438 * 19 17 16 48 48 H 0.96996 * 119.99881 * 180.02562 * 23 22 20 49 49 H 1.08997 * 113.61905 * 220.09089 * 28 14 13 50 50 H 1.09006 * 113.69443 * 89.19794 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6353 0.0011 7 1 3.0804 3.5260 0.8288 8 6 1.6228 4.9716 0.1280 9 6 2.0314 5.7643 -1.1374 10 6 3.3485 5.0545 -1.5511 11 8 3.0959 3.6665 -1.2448 12 6 2.1976 -1.2687 -0.0006 13 6 1.5590 -2.3483 -0.8902 14 6 1.9074 -3.3558 0.2206 15 7 0.8573 -4.3543 0.4616 16 6 1.2586 -5.6733 -0.0458 17 6 0.1591 -6.6692 0.2193 18 8 -0.8584 -6.3153 0.7766 19 7 0.3065 -7.9532 -0.1627 20 6 -0.6939 -8.8592 0.0780 21 1 -1.5999 -8.5440 0.5742 22 6 -0.5418 -10.1831 -0.3155 23 7 0.5609 -10.5667 -0.9188 24 14 -1.9052 -11.4174 0.0119 25 1 -3.1457 -10.9788 -0.6765 26 1 -1.4997 -12.7506 -0.5014 27 1 -2.1542 -11.5038 1.4734 28 6 1.8675 -2.1711 1.2002 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 0.7591 2.5298 0.8908 33 1 0.7584 2.5303 -0.8891 34 1 0.5464 4.8007 0.1402 35 1 1.9342 5.5023 1.0278 36 1 1.2763 5.6678 -1.9175 37 1 2.2105 6.8127 -0.8988 38 1 4.1861 5.4310 -0.9638 39 1 3.5393 5.1840 -2.6164 40 1 3.2667 -1.1401 -0.1692 41 1 0.4873 -2.2147 -1.0380 42 1 2.0976 -2.5209 -1.8221 43 1 2.8972 -3.7989 0.1115 44 1 -0.0193 -4.0623 0.0562 45 1 1.4409 -5.6098 -1.1185 46 1 2.1693 -5.9951 0.4591 47 1 1.1201 -8.2363 -0.6087 48 1 0.6669 -11.4908 -1.1938 49 1 2.6547 -2.2006 1.9535 50 1 0.8809 -1.9878 1.6259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486455016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:24 Heat of formation + Delta-G solvation = -117.824834 kcal Electronic energy + Delta-G solvation = -28914.132290 eV Core-core repulsion = 24747.946331 eV Total energy + Delta-G solvation = -4166.185959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.52690 -40.48892 -40.01399 -39.16267 -36.30605 -35.83590 -34.26577 -33.29209 -33.16581 -32.37726 -28.69737 -27.87863 -27.61142 -26.65593 -25.99148 -24.15603 -22.97758 -21.88835 -21.27791 -20.69837 -20.02342 -19.77537 -18.30123 -17.82932 -17.46452 -17.11710 -16.94167 -16.69486 -16.52803 -16.34502 -16.02948 -15.91223 -15.70777 -15.04753 -14.81389 -14.47187 -14.40258 -14.21940 -14.05493 -13.54642 -13.51732 -13.44537 -13.28631 -13.09538 -13.07399 -12.93146 -12.76996 -12.55623 -12.42887 -12.26648 -12.12843 -12.03698 -11.96383 -11.91667 -11.64804 -11.54625 -11.49174 -10.72619 -10.61934 -10.32681 -10.01097 -9.59336 -9.24031 -8.45789 -5.94808 1.40679 1.42554 1.53569 1.65728 2.01441 2.06094 2.30189 2.96020 2.97526 3.21495 3.44012 3.49974 3.61992 3.70127 3.73796 3.85678 3.95048 3.99403 4.03612 4.13571 4.27368 4.30407 4.33599 4.46286 4.49031 4.54025 4.60461 4.63100 4.67834 4.73902 4.75107 4.78553 4.84067 4.92621 4.95091 4.99686 5.00461 5.08046 5.13223 5.17702 5.24671 5.41398 5.61550 5.92643 6.05014 6.13735 6.41069 6.46688 6.60684 7.12976 7.22039 7.56915 8.11858 8.71279 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.001525 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.481154 B =18351.962952 C =18594.932144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.505 3.495 4 O -0.581 6.581 5 C -0.132 4.132 6 C 0.084 3.916 7 H 0.052 0.948 8 C -0.146 4.146 9 C -0.148 4.148 10 C 0.032 3.968 11 O -0.397 6.397 12 C 0.123 3.877 13 C -0.166 4.166 14 C 0.070 3.930 15 N -0.665 5.665 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.130 4.130 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.348 0.652 45 H 0.067 0.933 46 H 0.102 0.898 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.069 0.931 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 32.068 -1.164 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.337 5.337 3 C 0.295 3.705 4 O -0.461 6.461 5 C -0.172 4.172 6 C 0.026 3.974 7 H 0.070 0.930 8 C -0.184 4.184 9 C -0.186 4.186 10 C -0.044 4.044 11 O -0.317 6.317 12 C 0.018 3.982 13 C -0.206 4.206 14 C -0.041 4.041 15 N -0.296 5.296 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.169 4.169 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.168 0.832 45 H 0.085 0.915 46 H 0.120 0.880 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.496 31.778 -0.348 31.878 hybrid contribution 0.009 -0.930 -0.960 1.336 sum 2.504 30.849 -1.308 30.978 Atomic orbital electron populations 1.22059 0.77458 1.04891 1.03122 1.47942 1.08100 1.05024 1.72610 1.21307 0.87832 0.86570 0.74792 1.90688 1.16173 1.87940 1.51274 1.22042 0.98647 0.89502 1.06970 1.22586 0.92606 0.95197 0.87052 0.92968 1.23028 1.02232 0.93708 0.99427 1.23161 0.97019 1.00623 0.97798 1.23792 0.97805 0.81061 1.01779 1.88986 1.76672 1.26252 1.39764 1.22275 0.97072 0.81649 0.97158 1.24126 1.02269 0.95689 0.98512 1.22928 0.95681 0.90080 0.95404 1.60021 1.05612 1.00642 1.63371 1.21587 0.96465 0.89127 0.99667 1.20879 0.89771 0.83684 0.83150 1.90481 1.32893 1.79620 1.47952 1.41937 1.18619 1.07533 1.52945 1.19654 0.98804 0.90134 1.37966 0.90211 1.26048 1.00042 0.99093 0.96052 1.69669 1.27100 1.19296 1.40052 0.84982 0.77732 0.76895 0.78683 1.19594 1.19558 1.19750 1.23467 1.02833 0.93749 0.96882 0.91427 0.90464 0.88239 0.84508 0.86589 0.88135 0.89398 0.89954 0.88473 0.92370 0.88591 0.88193 0.88510 0.90716 0.87601 0.83232 0.91482 0.87992 0.77002 0.91316 0.91231 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 8.84 127.77 1.13 1.89 16 2 N -0.61 -11.36 3.08 -819.65 -2.53 -13.89 16 3 C 0.50 11.17 7.58 87.66 0.66 11.83 16 4 O -0.58 -18.52 14.99 7.77 0.12 -18.40 16 5 C -0.13 -1.72 3.74 29.85 0.11 -1.61 16 6 C 0.08 1.34 2.93 30.97 0.09 1.43 16 7 H 0.05 1.04 7.93 -2.39 -0.02 1.02 16 8 C -0.15 -1.16 6.63 31.58 0.21 -0.95 16 9 C -0.15 -1.17 7.17 31.98 0.23 -0.94 16 10 C 0.03 0.44 7.72 72.75 0.56 1.00 16 11 O -0.40 -8.75 10.58 -138.18 -1.46 -10.21 16 12 C 0.12 2.63 4.21 45.52 0.19 2.83 16 13 C -0.17 -3.31 7.16 31.18 0.22 -3.09 16 14 C 0.07 1.62 4.18 45.50 0.19 1.81 16 15 N -0.67 -20.23 6.24 -492.56 -3.08 -23.30 16 16 C 0.06 2.16 6.01 85.55 0.51 2.67 16 17 C 0.44 20.70 7.82 87.66 0.69 21.38 16 18 O -0.62 -34.17 15.78 -3.06 -0.05 -34.22 16 19 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16 20 C -0.34 -19.10 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 24 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 28 C -0.13 -2.82 7.41 31.12 0.23 -2.59 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.97 6.33 -2.39 -0.02 0.95 16 31 H 0.10 0.58 6.44 -2.39 -0.02 0.57 16 32 H 0.14 0.85 7.40 -2.39 -0.02 0.83 16 33 H 0.12 1.16 8.11 -2.39 -0.02 1.14 16 34 H 0.10 0.40 7.70 -2.39 -0.02 0.38 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 2.55 7.21 -2.39 -0.02 2.53 16 41 H 0.10 1.81 6.50 -2.39 -0.02 1.79 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.11 2.32 7.87 -2.39 -0.02 2.30 16 44 H 0.35 10.81 7.90 -89.69 -0.71 10.11 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.10 3.17 8.13 -2.39 -0.02 3.15 16 47 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.09 1.98 6.82 -2.38 -0.02 1.96 16 Total: -1.00 -77.61 401.47 -0.48 -78.08 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.48 Total: 40.43 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 6.31 Total: 17.17 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -6.94 Total: -117.70 kcal Atomic # 8 Polarization: -61.43 SS G_CDS: -1.39 Total: -62.83 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -77.61 -0.48 -78.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486455016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.744 kcal (2) G-P(sol) polarization free energy of solvation -77.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds