Wall clock time and date at job start Sat Apr 11 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42910 * 113.99879 * 2 1 4 4 C 1.52997 * 109.46748 * 185.00060 * 3 2 1 5 5 C 1.50706 * 115.55347 * 294.50152 * 4 3 2 6 6 O 1.21275 * 119.99896 * 98.64315 * 5 4 3 7 7 N 1.34775 * 119.99872 * 278.65302 * 5 4 3 8 8 C 1.46498 * 119.99996 * 355.86138 * 7 5 4 9 9 C 1.46499 * 119.99765 * 175.85976 * 7 5 4 10 10 C 1.52998 * 109.47320 * 269.99943 * 9 7 5 11 11 H 1.08996 * 113.03246 * 72.78778 * 10 9 7 12 12 C 1.53933 * 113.75962 * 204.50553 * 10 9 7 13 13 C 1.53941 * 86.45810 * 138.08793 * 12 10 9 14 14 N 1.47953 * 86.17919 * 336.22747 * 13 12 10 15 15 C 1.46899 * 110.99863 * 137.58089 * 14 13 12 16 16 C 1.50702 * 109.47254 * 66.15614 * 15 14 13 17 17 O 1.21294 * 119.99853 * 4.99720 * 16 15 14 18 18 N 1.34772 * 119.99824 * 184.99319 * 16 15 14 19 19 C 1.37099 * 119.99870 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99657 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00232 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00392 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47333 * 89.99558 * 23 21 19 25 25 H 1.48494 * 109.47137 * 209.99960 * 23 21 19 26 26 H 1.48498 * 109.46651 * 329.99891 * 23 21 19 27 27 C 1.52997 * 117.51818 * 80.20855 * 4 3 2 28 28 C 1.53000 * 60.00306 * 107.48067 * 27 4 3 29 29 H 1.08999 * 109.47358 * 299.99959 * 1 2 3 30 30 H 1.09004 * 109.47131 * 59.99751 * 1 2 3 31 31 H 1.09000 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46612 * 65.00050 * 3 2 1 33 33 H 1.09000 * 109.46937 * 304.99920 * 3 2 1 34 34 H 1.08999 * 109.47115 * 274.28798 * 8 7 5 35 35 H 1.08998 * 109.47285 * 34.29647 * 8 7 5 36 36 H 1.09000 * 109.47006 * 154.29900 * 8 7 5 37 37 H 1.09001 * 109.46916 * 150.00029 * 9 7 5 38 38 H 1.08996 * 109.47217 * 29.99959 * 9 7 5 39 39 H 1.09007 * 113.73380 * 23.68115 * 12 10 9 40 40 H 1.09002 * 113.73645 * 252.50192 * 12 10 9 41 41 H 1.08998 * 113.75378 * 90.54736 * 13 12 10 42 42 H 1.08997 * 113.75748 * 221.79788 * 13 12 10 43 43 H 1.09011 * 109.47112 * 186.15705 * 15 14 13 44 44 H 1.08992 * 109.47308 * 306.15208 * 15 14 13 45 45 H 0.96995 * 120.00233 * 0.02562 * 18 16 15 46 46 H 0.96992 * 120.00796 * 180.02562 * 22 21 19 47 47 H 1.09004 * 117.49383 * 214.96633 * 27 4 3 48 48 H 1.08991 * 117.50410 * 359.97438 * 27 4 3 49 49 H 1.09001 * 117.49643 * 252.51835 * 28 27 4 50 50 H 1.08999 * 117.52374 * 107.47994 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5304 1.1869 -0.1257 5 6 4.2296 0.5308 1.0370 6 8 4.5397 -0.6400 0.9757 7 7 4.5101 1.2452 2.1448 8 6 4.2177 2.6802 2.1846 9 6 5.1073 0.5868 3.3093 10 6 3.9981 0.0749 4.2304 11 1 3.4797 -0.7965 3.8303 12 6 4.4343 -0.0828 5.6982 13 6 3.0705 0.5270 6.0693 14 7 3.0883 1.1379 4.7219 15 6 1.7696 1.0398 4.0820 16 6 0.7783 1.8827 4.8421 17 8 1.1527 2.5748 5.7652 18 7 -0.5242 1.8676 4.4962 19 6 -1.4259 2.6349 5.1875 20 1 -1.0924 3.2517 6.0089 21 6 -2.7688 2.6189 4.8313 22 7 -3.1746 1.8689 3.8314 23 14 -3.9974 3.6649 5.7726 24 1 -4.1002 5.0021 5.1351 25 1 -5.3270 3.0040 5.7538 26 1 -3.5415 3.8200 7.1773 27 6 4.1077 0.9496 -1.5226 28 6 4.2695 2.3142 -0.8497 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7612 1.8140 0.9314 33 1 1.6195 1.8772 -0.8418 34 1 5.0536 3.2333 1.7564 35 1 3.3146 2.8831 1.6090 36 1 4.0675 2.9918 3.2183 37 1 5.7290 1.2998 3.8507 38 1 5.7202 -0.2515 2.9780 39 1 5.2838 0.5425 5.9730 40 1 4.5511 -1.1201 6.0122 41 1 2.2814 -0.2124 6.2059 42 1 3.1199 1.2512 6.8824 43 1 1.8371 1.3965 3.0541 44 1 1.4407 0.0007 4.0850 45 1 -0.8236 1.3140 3.7583 46 1 -4.1120 1.8580 3.5825 47 1 4.9934 0.3189 -1.6005 48 1 3.4047 0.8775 -2.3522 49 1 3.6725 3.1400 -1.2367 50 1 5.2612 2.5815 -0.4848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488644379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:36 Heat of formation + Delta-G solvation = -66.164989 kcal Electronic energy + Delta-G solvation = -31885.605670 eV Core-core repulsion = 27721.659850 eV Total energy + Delta-G solvation = -4163.945820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.74916 -40.91747 -39.55121 -38.83232 -37.21200 -36.39964 -35.94905 -33.35534 -32.11543 -30.15962 -29.25124 -27.53879 -27.49485 -26.68090 -25.33533 -25.14339 -23.37647 -22.84786 -21.13462 -20.66538 -19.93188 -19.67300 -18.11141 -17.78925 -17.45985 -17.25290 -17.05498 -17.00460 -16.54523 -16.46113 -16.29078 -15.73835 -15.61642 -15.31383 -15.14717 -14.94469 -14.49379 -14.10892 -13.94744 -13.69458 -13.55821 -13.39473 -13.25292 -13.15297 -12.98538 -12.88373 -12.58570 -12.48183 -12.45441 -12.40678 -12.33179 -12.14870 -11.94113 -11.74846 -11.59911 -11.50491 -11.26339 -10.77729 -10.55596 -10.40149 -10.04736 -9.88627 -9.46174 -8.48368 -5.97453 1.35982 1.40610 1.52913 1.55819 1.97963 1.98940 2.26513 2.38608 2.76951 3.03785 3.16774 3.24623 3.46153 3.60965 3.65701 3.78367 3.90449 4.01417 4.10196 4.16375 4.21221 4.25697 4.31430 4.36871 4.39864 4.44063 4.48763 4.51591 4.56822 4.65123 4.67571 4.73164 4.80347 4.83664 4.84244 4.85414 4.95384 4.96782 5.06608 5.17657 5.23703 5.35330 5.39536 5.57332 5.87335 6.03706 6.13081 6.42447 6.55766 7.09549 7.18269 7.50477 8.05544 8.68948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.004061 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.376662 B = 6892.616623 C = 8618.736538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.103 3.897 4 C -0.179 4.179 5 C 0.550 3.450 6 O -0.576 6.576 7 N -0.600 5.600 8 C 0.080 3.920 9 C 0.139 3.861 10 C 0.011 3.989 11 H 0.060 0.940 12 C -0.113 4.113 13 C 0.009 3.991 14 N -0.449 5.449 15 C 0.036 3.964 16 C 0.444 3.556 17 O -0.609 6.609 18 N -0.572 5.572 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.139 4.139 28 C -0.125 4.125 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.278 0.722 47 H 0.092 0.908 48 H 0.115 0.885 49 H 0.129 0.871 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.768 -0.485 -9.797 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.026 3.974 4 C -0.182 4.182 5 C 0.338 3.662 6 O -0.456 6.456 7 N -0.331 5.331 8 C -0.062 4.062 9 C 0.017 3.983 10 C -0.099 4.099 11 H 0.078 0.922 12 C -0.151 4.151 13 C -0.120 4.120 14 N -0.172 5.172 15 C -0.096 4.096 16 C 0.231 3.769 17 O -0.495 6.495 18 N -0.209 5.209 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.176 4.176 28 C -0.162 4.162 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.133 0.867 49 H 0.148 0.852 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.258 -0.115 -9.368 17.905 hybrid contribution -2.021 -0.704 0.234 2.153 sum 13.238 -0.820 -9.134 16.104 Atomic orbital electron populations 1.22847 0.79667 1.03544 1.00653 1.87934 1.20825 1.28311 1.95526 1.21991 0.89158 0.84931 1.01275 1.21263 0.94020 1.08718 0.94208 1.19830 0.77500 0.85566 0.83255 1.90633 1.54550 1.18014 1.82393 1.47765 1.61532 1.10424 1.13355 1.21988 1.01575 0.78759 1.03919 1.21452 0.93575 0.98580 0.84736 1.24032 0.95720 0.93219 0.96942 0.92168 1.23331 0.97092 1.02546 0.92175 1.23643 0.97587 0.97208 0.93530 1.68456 1.06169 1.39578 1.03011 1.22164 0.91118 0.97370 0.98911 1.20492 0.83217 0.86345 0.86839 1.90489 1.79219 1.46429 1.33363 1.41940 1.06143 1.41160 1.31691 1.19643 0.88754 1.23128 1.14563 0.90197 1.26008 0.98901 0.98546 0.97516 1.69668 1.18009 1.39931 1.28346 0.84949 0.77102 0.78131 0.78304 1.19442 1.19685 1.19815 1.23018 1.02647 0.99458 0.92514 1.23317 1.01642 0.91900 0.99308 0.94894 0.92119 0.88946 0.93725 0.89871 0.90044 0.91649 0.90574 0.87580 0.89707 0.86951 0.89144 0.93200 0.90442 0.89257 0.93446 0.77470 0.91294 0.88967 0.86695 0.85248 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.01 16 2 O -0.41 -12.37 10.64 -148.98 -1.58 -13.95 16 3 C 0.10 2.55 5.53 71.98 0.40 2.95 16 4 C -0.18 -4.10 1.03 -52.93 -0.05 -4.15 16 5 C 0.55 15.71 6.78 87.66 0.59 16.30 16 6 O -0.58 -20.95 16.57 -3.02 -0.05 -21.00 16 7 N -0.60 -14.65 2.83 -846.78 -2.39 -17.04 16 8 C 0.08 1.66 8.93 127.77 1.14 2.80 16 9 C 0.14 3.22 5.56 86.38 0.48 3.70 16 10 C 0.01 0.30 3.58 44.95 0.16 0.46 16 11 H 0.06 1.87 7.72 -2.39 -0.02 1.85 16 12 C -0.11 -2.53 7.83 31.24 0.24 -2.28 16 13 C 0.01 0.29 6.59 86.41 0.57 0.86 16 14 N -0.45 -14.67 4.85 -887.46 -4.30 -18.97 16 15 C 0.04 1.38 5.39 85.56 0.46 1.84 16 16 C 0.44 21.44 7.49 87.66 0.66 22.10 16 17 O -0.61 -33.24 15.01 -3.07 -0.05 -33.29 16 18 N -0.57 -29.64 5.29 -306.99 -1.62 -31.26 16 19 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.51 5.50 84.92 0.47 -0.05 16 22 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 23 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C -0.14 -2.61 9.89 30.59 0.30 -2.31 16 28 C -0.12 -1.79 8.65 30.60 0.26 -1.53 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.22 6.10 -2.39 -0.01 1.20 16 33 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 34 H 0.08 1.20 7.92 -2.39 -0.02 1.18 16 35 H 0.06 1.38 5.44 -2.39 -0.01 1.37 16 36 H 0.08 1.86 7.36 -2.39 -0.02 1.85 16 37 H 0.11 1.97 7.84 -2.39 -0.02 1.95 16 38 H 0.08 2.01 7.37 -2.39 -0.02 2.00 16 39 H 0.11 2.06 7.94 -2.38 -0.02 2.04 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.70 7.85 -2.39 -0.02 1.68 16 42 H 0.08 2.71 8.03 -2.39 -0.02 2.69 16 43 H 0.09 3.27 6.99 -2.38 -0.02 3.25 16 44 H 0.05 1.81 7.69 -2.39 -0.02 1.79 16 45 H 0.39 19.68 7.90 -92.71 -0.73 18.95 16 46 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 47 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.11 1.41 7.91 -2.39 -0.02 1.39 16 Total: -1.00 -73.17 407.15 0.27 -72.90 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: 0.21 Total: 42.00 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 7.75 Total: 24.87 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -8.03 Total: -115.92 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -1.68 Total: -68.24 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -73.17 0.27 -72.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488644379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.733 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds