Wall clock time and date at job start Sat Apr 11 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99756 * 2 1 4 4 C 1.50702 * 109.46569 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00461 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99767 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99861 * 359.97438 * 6 4 3 8 8 C 1.46489 * 120.00055 * 179.97438 * 6 4 3 9 9 C 1.50703 * 109.47055 * 90.00277 * 8 6 4 10 10 O 1.21280 * 120.00119 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00129 * 179.97438 * 9 8 6 12 12 C 1.48873 * 128.06718 * 179.97438 * 11 9 8 13 13 C 1.53698 * 102.56302 * 222.41265 * 12 11 9 14 14 H 1.09001 * 104.28914 * 79.68438 * 13 12 11 15 15 C 1.48448 * 114.54428 * 194.09787 * 13 12 11 16 16 C 1.50462 * 116.15046 * 97.79671 * 15 13 12 17 17 N 1.45546 * 110.39536 * 40.48395 * 16 15 13 18 18 C 1.36942 * 118.98079 * 131.19643 * 17 16 15 19 19 H 1.08000 * 120.00198 * 332.29811 * 18 17 16 20 20 C 1.38812 * 119.99620 * 152.29956 * 18 17 16 21 21 N 1.31624 * 120.00170 * 344.05709 * 20 18 17 22 22 Si 1.86798 * 119.99894 * 164.06349 * 20 18 17 23 23 H 1.48498 * 109.47047 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47566 * 120.00001 * 22 20 18 25 25 H 1.48502 * 109.46793 * 239.99945 * 22 20 18 26 26 C 1.44694 * 122.03581 * 311.22867 * 17 16 15 27 27 C 1.51336 * 106.31225 * 329.28701 * 13 12 11 28 28 H 1.09002 * 109.78910 * 125.43031 * 27 13 12 29 29 C 1.48240 * 128.06351 * 359.97200 * 11 9 8 30 30 H 1.08999 * 109.47144 * 59.99855 * 1 2 3 31 31 H 1.08996 * 109.46629 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46811 * 299.99713 * 1 2 3 33 33 H 1.09005 * 109.46940 * 60.00732 * 3 2 1 34 34 H 1.08996 * 109.47428 * 300.00005 * 3 2 1 35 35 H 1.08996 * 109.47109 * 270.00190 * 7 6 4 36 36 H 1.09005 * 109.47015 * 29.99876 * 7 6 4 37 37 H 1.08992 * 109.47038 * 149.99855 * 7 6 4 38 38 H 1.08998 * 109.47724 * 329.99998 * 8 6 4 39 39 H 1.09000 * 109.47049 * 209.99975 * 8 6 4 40 40 H 1.09000 * 110.78967 * 104.13927 * 12 11 9 41 41 H 1.09005 * 110.78513 * 340.67767 * 12 11 9 42 42 H 1.09004 * 108.28040 * 219.47215 * 15 13 12 43 43 H 1.09003 * 108.27386 * 336.34533 * 15 13 12 44 44 H 1.09001 * 109.17496 * 280.34996 * 16 15 13 45 45 H 1.09000 * 109.44621 * 160.79279 * 16 15 13 46 46 H 0.96992 * 120.00109 * 180.02562 * 21 20 18 47 47 H 1.09001 * 108.53808 * 280.60228 * 26 17 16 48 48 H 1.08999 * 108.54290 * 163.04292 * 26 17 16 49 49 H 1.08996 * 110.33614 * 23.03273 * 29 11 9 50 50 H 1.08998 * 110.42095 * 260.84142 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 3.6465 3.6195 0.0003 8 6 5.7369 2.1812 -0.0003 9 6 6.2376 2.1421 -1.4211 10 8 5.4519 2.2043 -2.3429 11 7 7.5586 2.0381 -1.6675 12 6 8.2447 1.9839 -2.9876 13 6 9.2985 0.8860 -2.7719 14 1 8.7427 -0.0454 -2.8802 15 6 10.3547 0.8319 -3.8136 16 6 11.6500 1.5215 -3.4811 17 7 12.0122 1.2785 -2.0926 18 6 13.2850 0.8656 -1.8013 19 1 13.8523 0.3081 -2.5319 20 6 13.8459 1.1636 -0.5671 21 7 13.3048 2.0901 0.1954 22 14 15.3689 0.2500 0.0117 23 1 15.7779 -0.7349 -1.0216 24 1 16.4717 1.2186 0.2368 25 1 15.0676 -0.4605 1.2804 26 6 11.0688 1.4591 -1.0104 27 6 9.6764 0.9415 -1.3075 28 1 9.5435 -0.0411 -0.8546 29 6 8.6671 1.9511 -0.6871 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8464 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 3.4902 3.9479 -1.0272 36 1 2.6867 3.5645 0.5141 37 1 4.2937 4.3300 0.5144 38 1 6.0289 1.2651 0.5132 39 1 6.1693 3.0395 0.5139 40 1 8.7206 2.9376 -3.2158 41 1 7.5464 1.7005 -3.7751 42 1 10.5743 -0.2149 -4.0237 43 1 9.9602 1.2828 -4.7241 44 1 11.5360 2.5937 -3.6408 45 1 12.4396 1.1432 -4.1304 46 1 13.6969 2.2986 1.0576 47 1 11.0018 2.5230 -0.7830 48 1 11.4495 0.9432 -0.1289 49 1 8.2989 1.5792 0.2690 50 1 9.1378 2.9256 -0.5577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489191858.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:43 Heat of formation + Delta-G solvation = -88.256311 kcal Electronic energy + Delta-G solvation = -30512.004241 eV Core-core repulsion = 26347.100469 eV Total energy + Delta-G solvation = -4164.903772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.68238 -40.93221 -39.58055 -38.41601 -37.19241 -36.50959 -34.72726 -32.65450 -32.57956 -31.17480 -29.38796 -28.50651 -27.41144 -27.00289 -26.48543 -25.32198 -23.65330 -23.01435 -21.22712 -20.12274 -19.60389 -18.57672 -18.32450 -18.09661 -17.78641 -17.40461 -17.25516 -16.87497 -16.54652 -16.36253 -16.07045 -15.73454 -15.36615 -15.32428 -15.19441 -14.82128 -14.47301 -14.26907 -14.05709 -13.94163 -13.75241 -13.63137 -13.37276 -13.20241 -13.12747 -12.90086 -12.79885 -12.64638 -12.45707 -12.38024 -12.34954 -11.94782 -11.86880 -11.46597 -11.29606 -11.13368 -11.09668 -10.96793 -10.78248 -10.45531 -9.84882 -9.82380 -8.62044 -7.83793 -5.30764 1.28492 1.47059 1.49036 1.50324 1.59595 1.62477 2.01952 2.53203 2.94682 3.27106 3.37685 3.50776 3.52597 3.76089 3.82194 3.92307 4.02199 4.10461 4.14599 4.20204 4.28737 4.29979 4.37307 4.48074 4.49030 4.50723 4.56369 4.64208 4.67473 4.70244 4.77721 4.85833 4.87500 4.92404 4.95519 4.98504 5.20149 5.23499 5.29583 5.38170 5.43261 5.59547 5.70918 5.83506 5.96915 6.25147 6.43793 6.47867 6.95890 7.05628 7.23455 7.99800 8.36227 9.20532 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002307 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.019294 B =12133.527982 C =12532.350788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.051 3.949 4 C 0.506 3.494 5 O -0.576 6.576 6 N -0.598 5.598 7 C 0.069 3.931 8 C 0.102 3.898 9 C 0.516 3.484 10 O -0.579 6.579 11 N -0.623 5.623 12 C 0.119 3.881 13 C -0.075 4.075 14 H 0.044 0.956 15 C -0.107 4.107 16 C 0.151 3.849 17 N -0.606 5.606 18 C -0.271 4.271 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.204 3.796 27 C -0.108 4.108 28 H 0.067 0.933 29 C 0.113 3.887 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.010 0.990 45 H 0.055 0.945 46 H 0.250 0.750 47 H 0.005 0.995 48 H 0.039 0.961 49 H 0.097 0.903 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.103 5.457 1.599 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.028 4.028 4 C 0.295 3.705 5 O -0.455 6.455 6 N -0.331 5.331 7 C -0.072 4.072 8 C -0.024 4.024 9 C 0.305 3.695 10 O -0.460 6.460 11 N -0.357 5.357 12 C -0.003 4.003 13 C -0.095 4.095 14 H 0.062 0.938 15 C -0.146 4.146 16 C 0.026 3.974 17 N -0.328 5.328 18 C -0.401 4.401 19 H 0.081 0.919 20 C -0.240 4.240 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.077 3.923 27 C -0.129 4.129 28 H 0.086 0.914 29 C -0.010 4.010 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.028 0.972 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.023 0.977 48 H 0.057 0.943 49 H 0.115 0.885 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.278 4.818 1.284 24.784 hybrid contribution 1.127 -0.376 0.245 1.213 sum -23.151 4.441 1.529 23.623 Atomic orbital electron populations 1.23048 0.78058 1.04196 1.01803 1.87975 1.22405 1.26877 1.95797 1.22400 0.88447 0.86749 1.05195 1.21123 0.90719 0.83619 0.75032 1.90708 1.75739 1.28545 1.50463 1.47523 1.04928 1.07919 1.72767 1.22236 1.00424 0.81481 1.03094 1.21410 0.81526 1.07238 0.92260 1.21355 0.80006 0.75135 0.93037 1.90644 1.55035 1.52536 1.47743 1.49284 1.05059 1.71553 1.09773 1.22446 0.92955 0.99206 0.85707 1.20045 0.95884 0.98647 0.94905 0.93767 1.20233 0.95116 1.01400 0.97898 1.20158 0.95198 0.96452 0.85639 1.43336 1.08500 1.78912 1.02090 1.19580 0.92050 1.27778 1.00717 0.91863 1.25731 1.00807 0.98081 0.99401 1.70192 1.43236 1.31754 1.12247 0.85295 0.79563 0.78180 0.77920 1.19511 1.21872 1.21670 1.19668 0.85812 0.96642 0.90144 1.21793 0.96660 0.98949 0.95469 0.91443 1.23018 0.85655 0.99896 0.92435 0.92427 0.88881 0.91582 0.86171 0.88081 0.92534 0.87604 0.88259 0.87548 0.83197 0.90310 0.90492 0.92573 0.89803 0.97192 0.92686 0.94043 0.97726 0.94272 0.88512 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -9.34 10.24 -129.94 -1.33 -10.67 16 3 C 0.05 0.85 4.97 71.24 0.35 1.21 16 4 C 0.51 13.15 7.75 87.66 0.68 13.83 16 5 O -0.58 -21.52 16.08 16.02 0.26 -21.26 16 6 N -0.60 -12.16 2.36 -851.15 -2.01 -14.18 16 7 C 0.07 0.69 10.29 127.77 1.31 2.00 16 8 C 0.10 2.25 4.94 85.64 0.42 2.67 16 9 C 0.52 15.44 7.99 87.66 0.70 16.14 16 10 O -0.58 -21.26 16.72 -3.03 -0.05 -21.32 16 11 N -0.62 -18.41 3.32 -804.61 -2.67 -21.08 16 12 C 0.12 3.59 6.47 86.16 0.56 4.15 16 13 C -0.07 -2.46 2.49 -12.54 -0.03 -2.49 16 14 H 0.04 1.47 7.98 -2.39 -0.02 1.45 16 15 C -0.11 -3.50 5.50 28.34 0.16 -3.34 16 16 C 0.15 6.05 6.52 85.74 0.56 6.61 16 17 N -0.61 -29.52 3.06 -716.60 -2.19 -31.71 16 18 C -0.27 -14.63 9.41 84.03 0.79 -13.84 16 19 H 0.06 3.37 7.80 -2.91 -0.02 3.35 16 20 C -0.04 -2.41 4.84 84.86 0.41 -2.00 16 21 N -0.93 -52.72 11.12 21.65 0.24 -52.48 16 22 Si 0.96 44.15 29.58 68.60 2.03 46.18 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 C 0.20 9.26 4.49 86.22 0.39 9.65 16 27 C -0.11 -3.84 3.45 -10.92 -0.04 -3.88 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 C 0.11 3.23 6.41 86.96 0.56 3.79 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.12 0.97 7.40 -2.38 -0.02 0.96 16 34 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.36 6.44 -2.38 -0.02 0.34 16 37 H 0.10 0.58 7.89 -2.39 -0.02 0.56 16 38 H 0.11 2.60 7.24 -2.39 -0.02 2.58 16 39 H 0.15 2.06 7.89 -2.39 -0.02 2.04 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 2.35 7.89 -2.38 -0.02 2.33 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 43 H 0.08 2.25 7.83 -2.39 -0.02 2.23 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.05 2.17 7.80 -2.39 -0.02 2.15 16 46 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 47 H 0.00 0.24 6.76 -2.39 -0.02 0.22 16 48 H 0.04 2.03 6.35 -2.39 -0.02 2.01 16 49 H 0.10 2.32 7.36 -2.39 -0.02 2.30 16 50 H 0.08 2.45 7.04 -2.39 -0.02 2.44 16 Total: -1.00 -81.55 395.57 3.27 -78.27 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.92 Total: 12.20 kcal Atomic # 6 Polarization: 27.97 SS G_CDS: 8.07 Total: 36.03 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.63 Total: -119.44 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -1.12 Total: -53.24 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -81.55 3.27 -78.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489191858.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.983 kcal (2) G-P(sol) polarization free energy of solvation -81.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds