Wall clock time and date at job start Sat Apr 11 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 113.99885 * 2 1 4 4 C 1.53007 * 109.47069 * 180.02562 * 3 2 1 5 5 C 1.52998 * 115.54702 * 294.86956 * 4 3 2 6 6 C 1.50700 * 109.47345 * 279.26978 * 5 4 3 7 7 O 1.21283 * 119.99907 * 5.65581 * 6 5 4 8 8 N 1.34779 * 120.00421 * 185.65362 * 6 5 4 9 9 C 1.46496 * 120.00172 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.84989 * 336.18925 * 9 8 6 11 11 C 1.53957 * 113.61784 * 107.46242 * 9 8 6 12 12 C 1.53779 * 87.01833 * 89.19616 * 11 9 8 13 13 H 1.09002 * 113.62214 * 270.77176 * 12 11 9 14 14 N 1.46907 * 113.61407 * 139.95251 * 12 11 9 15 15 C 1.46894 * 110.99901 * 105.86388 * 14 12 11 16 16 C 1.50700 * 109.47115 * 180.02562 * 15 14 12 17 17 O 1.21295 * 119.99924 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00298 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00265 * 179.72519 * 18 16 15 20 20 H 1.08001 * 120.00555 * 0.27185 * 19 18 16 21 21 C 1.38958 * 120.00337 * 180.27885 * 19 18 16 22 22 N 1.31414 * 119.99711 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00345 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47278 * 89.99458 * 23 21 19 25 25 H 1.48498 * 109.47351 * 209.99943 * 23 21 19 26 26 H 1.48511 * 109.46931 * 329.99578 * 23 21 19 27 27 C 1.53784 * 113.61482 * 204.99866 * 9 8 6 28 28 C 1.52997 * 117.51842 * 80.57048 * 4 3 2 29 29 C 1.52991 * 59.99962 * 107.48235 * 28 4 3 30 30 H 1.08999 * 109.47569 * 59.99452 * 1 2 3 31 31 H 1.09006 * 109.47472 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47244 * 299.99456 * 1 2 3 33 33 H 1.09002 * 109.47122 * 60.00602 * 3 2 1 34 34 H 1.09003 * 109.47457 * 300.00306 * 3 2 1 35 35 H 1.09000 * 109.47278 * 159.27454 * 5 4 3 36 36 H 1.09001 * 109.47340 * 39.27335 * 5 4 3 37 37 H 0.97000 * 119.99353 * 359.97438 * 8 6 5 38 38 H 1.09001 * 113.66594 * 334.67372 * 11 9 8 39 39 H 1.08995 * 113.61613 * 203.71614 * 11 9 8 40 40 H 1.00896 * 110.99390 * 341.90956 * 14 12 11 41 41 H 1.09003 * 109.47299 * 60.00361 * 15 14 12 42 42 H 1.09003 * 109.47450 * 300.00193 * 15 14 12 43 43 H 0.97006 * 119.99928 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99698 * 180.02562 * 22 21 19 45 45 H 1.08997 * 113.61823 * 156.25011 * 27 9 8 46 46 H 1.08994 * 113.68949 * 25.35133 * 27 9 8 47 47 H 1.08997 * 117.49695 * 214.97664 * 28 4 3 48 48 H 1.09001 * 117.49770 * 359.97438 * 28 4 3 49 49 H 1.09007 * 117.50051 * 252.50977 * 29 28 4 50 50 H 1.09005 * 117.52333 * 107.48243 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1479 0.5536 1.2514 6 6 4.2405 1.5894 2.3420 7 8 3.7623 2.6912 2.1741 8 7 4.8549 1.2914 3.5041 9 6 4.9445 2.2982 4.5645 10 1 4.8715 3.3181 4.1870 11 6 4.0207 2.0154 5.7632 12 6 5.1813 1.2045 6.3635 13 1 5.1796 0.1552 6.0682 14 7 5.3407 1.3891 7.8122 15 6 4.8695 0.2084 8.5482 16 6 5.0479 0.4344 10.0275 17 8 5.5205 1.4768 10.4290 18 7 4.6822 -0.5216 10.9042 19 6 4.8497 -0.3182 12.2496 20 1 5.2705 0.6099 12.6073 21 6 4.4781 -1.3063 13.1533 22 7 3.9656 -2.4355 12.7182 23 14 4.7056 -1.0289 14.9864 24 1 3.4817 -0.4029 15.5480 25 1 4.9483 -2.3310 15.6578 26 1 5.8679 -0.1321 15.2109 27 6 6.1266 2.0794 5.5234 28 6 4.2220 0.9074 -1.3395 29 6 4.3314 2.2910 -0.6957 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8900 35 1 5.1453 0.1802 1.0193 36 1 3.5198 -0.2718 1.5866 37 1 5.2370 0.4101 3.6385 38 1 3.1498 1.4102 5.5112 39 1 3.7667 2.9057 6.3384 40 1 4.8665 2.2230 8.1247 41 1 5.4457 -0.6647 8.2417 42 1 3.8144 0.0419 8.3311 43 1 4.3046 -1.3554 10.5831 44 1 3.7059 -3.1250 13.3490 45 1 6.4494 2.9873 6.0329 46 1 6.9541 1.5262 5.0793 47 1 5.1100 0.2755 -1.3284 48 1 3.5871 0.8106 -2.2202 49 1 3.7685 3.1048 -1.1528 50 1 5.2913 2.5697 -0.2607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490889978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:59 Heat of formation + Delta-G solvation = -96.981034 kcal Electronic energy + Delta-G solvation = -28675.641121 eV Core-core repulsion = 24510.359017 eV Total energy + Delta-G solvation = -4165.282104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40499 -40.35697 -39.82993 -38.87226 -37.46801 -36.11558 -35.35497 -33.57643 -33.18356 -30.48173 -28.93106 -28.31881 -26.64030 -26.43488 -26.09235 -24.04814 -23.29300 -22.27464 -21.17087 -20.47834 -20.08026 -19.84823 -18.13548 -17.74399 -17.34065 -16.99975 -16.93862 -16.85748 -16.71282 -16.35585 -16.06775 -15.90180 -15.55413 -15.48423 -15.21503 -14.72281 -14.47241 -14.33068 -14.25614 -13.57769 -13.51259 -13.47016 -13.28100 -13.15840 -12.98672 -12.81096 -12.62085 -12.53126 -12.41670 -12.34247 -12.12178 -12.03650 -11.73910 -11.51123 -11.37741 -11.28867 -11.07286 -10.73522 -10.46219 -10.33430 -10.02416 -10.01352 -9.23528 -8.47038 -5.95727 1.37900 1.41840 1.54599 1.68611 2.05147 2.12015 2.29226 2.60324 2.95129 3.13029 3.20266 3.45046 3.61805 3.67673 3.71769 3.80030 3.92653 3.98966 4.00813 4.08002 4.22004 4.32620 4.38074 4.47543 4.51077 4.55323 4.57777 4.58148 4.61882 4.75017 4.80658 4.81167 4.83655 4.87547 4.92556 4.99579 5.04693 5.06902 5.11489 5.16994 5.26124 5.40789 5.60504 5.93450 6.16444 6.18398 6.40033 6.59948 6.61298 7.12417 7.32099 7.56120 8.11542 8.70284 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.001657 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.482478 B =16898.767911 C =17832.589500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.102 3.898 4 C -0.126 4.126 5 C -0.097 4.097 6 C 0.513 3.487 7 O -0.572 6.572 8 N -0.704 5.704 9 C 0.129 3.871 10 H 0.088 0.912 11 C -0.178 4.178 12 C 0.068 3.932 13 H 0.112 0.888 14 N -0.671 5.671 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.123 4.123 28 C -0.150 4.150 29 C -0.155 4.155 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.415 0.585 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.345 0.655 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.113 0.887 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 1.528 -30.378 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.026 3.974 4 C -0.126 4.126 5 C -0.136 4.136 6 C 0.301 3.699 7 O -0.451 6.451 8 N -0.356 5.356 9 C 0.022 3.978 10 H 0.106 0.894 11 C -0.219 4.219 12 C -0.042 4.042 13 H 0.130 0.870 14 N -0.302 5.302 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.162 4.162 28 C -0.187 4.187 29 C -0.192 4.192 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.252 0.748 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.165 0.835 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.131 0.869 48 H 0.119 0.881 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.721 2.451 -30.106 30.255 hybrid contribution -1.360 -0.211 1.126 1.779 sum -3.081 2.239 -28.980 29.229 Atomic orbital electron populations 1.22896 0.79934 1.03824 1.00417 1.87816 1.20842 1.28204 1.95485 1.21899 0.91342 0.84212 0.99954 1.20975 0.92206 1.05484 0.93981 1.21186 1.04354 0.96877 0.91184 1.21158 0.76488 0.88952 0.83277 1.90679 1.47991 1.25233 1.81227 1.45658 1.58644 1.16874 1.14410 1.21566 0.96808 0.93055 0.86363 0.89375 1.24176 0.98294 1.01175 0.98232 1.23259 0.95269 0.99885 0.85762 0.86964 1.60056 1.62521 1.04193 1.03417 1.21579 1.00149 0.95682 0.89292 1.20960 0.82686 0.84548 0.89474 1.90492 1.50524 1.29146 1.80970 1.41937 1.55974 1.17204 1.05910 1.19670 1.41084 1.02991 0.82714 0.90379 1.26043 0.96070 0.94521 1.04654 1.69669 1.42430 1.06634 1.37318 0.84926 0.78703 0.77895 0.76799 1.19669 1.19471 1.19831 1.23364 0.96620 1.01138 0.95036 1.23184 1.02549 0.98428 0.94521 1.22898 1.01132 0.92463 1.02708 0.93160 0.88210 0.94269 0.94188 0.92745 0.86155 0.87192 0.74823 0.91489 0.89590 0.83533 0.87506 0.91793 0.76940 0.91283 0.88998 0.89269 0.86917 0.88148 0.88949 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.12 10.44 -148.98 -1.56 -8.68 16 3 C 0.10 1.77 5.71 71.98 0.41 2.18 16 4 C -0.13 -1.89 1.26 -52.18 -0.07 -1.96 16 5 C -0.10 -1.24 5.62 29.85 0.17 -1.07 16 6 C 0.51 9.37 7.68 87.66 0.67 10.04 16 7 O -0.57 -15.01 14.57 -3.04 -0.04 -15.06 16 8 N -0.70 -10.44 5.26 -439.75 -2.32 -12.75 16 9 C 0.13 2.37 4.33 45.58 0.20 2.56 16 10 H 0.09 1.94 7.46 -2.39 -0.02 1.92 16 11 C -0.18 -3.62 7.52 31.18 0.23 -3.38 16 12 C 0.07 1.42 4.04 45.44 0.18 1.61 16 13 H 0.11 1.95 7.88 -2.39 -0.02 1.94 16 14 N -0.67 -20.23 6.24 -492.84 -3.07 -23.31 16 15 C 0.07 2.17 6.02 85.56 0.52 2.68 16 16 C 0.44 20.65 7.82 87.66 0.69 21.34 16 17 O -0.62 -34.73 15.78 -3.08 -0.05 -34.78 16 18 N -0.57 -29.35 5.29 -306.98 -1.62 -30.97 16 19 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.45 13.05 21.67 0.28 -49.17 16 23 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C -0.12 -2.22 7.63 31.12 0.24 -1.98 16 28 C -0.15 -1.65 9.90 30.59 0.30 -1.35 16 29 C -0.15 -2.19 9.14 30.59 0.28 -1.92 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.04 0.85 7.62 -2.39 -0.02 0.83 16 34 H 0.05 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.12 0.90 7.94 -2.39 -0.02 0.88 16 36 H 0.11 1.36 7.89 -2.39 -0.02 1.34 16 37 H 0.41 3.86 8.70 -92.71 -0.81 3.05 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.87 7.83 -2.39 -0.02 1.85 16 40 H 0.35 11.23 7.91 -89.70 -0.71 10.52 16 41 H 0.11 3.12 8.13 -2.39 -0.02 3.10 16 42 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.40 19.19 7.90 -92.70 -0.73 18.46 16 44 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.11 0.89 8.08 -2.39 -0.02 0.87 16 48 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -73.35 416.69 -1.28 -74.63 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -1.28 Total: 43.30 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.35 Total: 11.81 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -6.73 Total: -116.20 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -1.65 Total: -58.52 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -73.35 -1.28 -74.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490889978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.350 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds