Wall clock time and date at job start Sat Apr 11 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99772 * 2 1 4 4 C 1.50696 * 109.46937 * 293.95152 * 3 2 1 5 5 O 1.21292 * 120.00259 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99761 * 179.97438 * 4 3 2 7 7 C 1.37105 * 119.99976 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99986 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99677 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00253 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99496 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 299.99614 * 11 9 7 14 14 H 1.48498 * 109.47295 * 60.00221 * 11 9 7 15 15 C 1.46896 * 110.99779 * 123.94907 * 2 1 3 16 16 H 1.09001 * 109.49787 * 186.10935 * 15 2 1 17 17 C 1.53041 * 109.50075 * 306.21243 * 15 2 1 18 18 C 1.53037 * 109.53667 * 181.31419 * 17 15 2 19 19 C 1.53187 * 109.31556 * 298.63634 * 18 17 15 20 20 N 1.46916 * 108.77818 * 54.63457 * 19 18 17 21 21 C 1.34778 * 120.63536 * 126.37066 * 20 19 18 22 22 O 1.21280 * 120.00612 * 180.02562 * 21 20 19 23 23 C 1.50702 * 119.99476 * 0.02757 * 21 20 19 24 24 H 1.09006 * 110.45676 * 302.60078 * 23 21 20 25 25 C 1.54517 * 110.50967 * 180.02562 * 23 21 20 26 26 C 1.54475 * 104.05820 * 241.35248 * 25 23 21 27 27 O 1.44421 * 104.80791 * 23.98016 * 26 25 23 28 28 C 1.44425 * 105.27187 * 319.48540 * 27 26 25 29 29 C 1.46928 * 118.73987 * 306.39360 * 20 19 18 30 30 H 1.09007 * 109.46897 * 60.00151 * 1 2 3 31 31 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47393 * 300.00128 * 1 2 3 33 33 H 1.09000 * 109.47082 * 173.95237 * 3 2 1 34 34 H 1.09004 * 109.47143 * 53.95192 * 3 2 1 35 35 H 0.96999 * 120.00043 * 0.02562 * 6 4 3 36 36 H 0.97000 * 119.99719 * 359.97438 * 10 9 7 37 37 H 1.08994 * 109.46026 * 301.33343 * 17 15 2 38 38 H 1.09003 * 109.46149 * 61.29816 * 17 15 2 39 39 H 1.09002 * 109.49715 * 178.68292 * 18 17 15 40 40 H 1.08998 * 109.49757 * 58.58889 * 18 17 15 41 41 H 1.09009 * 109.58742 * 294.84691 * 19 18 17 42 42 H 1.09000 * 109.59055 * 174.42340 * 19 18 17 43 43 H 1.09004 * 110.50898 * 359.97438 * 25 23 21 44 44 H 1.09001 * 110.50629 * 122.70802 * 25 23 21 45 45 H 1.08999 * 110.37012 * 142.81563 * 26 25 23 46 46 H 1.09006 * 110.37151 * 265.02984 * 26 25 23 47 47 H 1.09005 * 110.37573 * 281.68015 * 28 27 26 48 48 H 1.09004 * 110.37330 * 159.34416 * 28 27 26 49 49 H 1.09005 * 109.58843 * 293.82264 * 29 20 19 50 50 H 1.08997 * 109.70444 * 173.46738 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0047 1.4455 -2.1408 6 7 2.0180 3.3202 -1.5233 7 6 1.6923 3.9347 -2.7048 8 1 1.1301 3.3988 -3.4552 9 6 2.0856 5.2471 -2.9368 10 7 2.7702 5.8990 -2.0240 11 14 1.6412 6.0845 -4.5463 12 1 2.1739 7.4707 -4.5465 13 1 2.2331 5.3272 -5.6784 14 1 0.1641 6.1213 -4.6938 15 6 1.9954 -0.7659 1.1376 16 1 3.0796 -0.6604 1.1768 17 6 1.3828 -0.2372 2.4366 18 6 1.9554 -1.0128 3.6252 19 6 1.5909 -2.4942 3.4866 20 7 2.0500 -2.9735 2.1758 21 6 2.8405 -4.0610 2.0806 22 8 3.2132 -4.4464 0.9927 23 6 3.2612 -4.7980 3.3259 24 1 3.7804 -4.1259 4.0093 25 6 4.1598 -6.0021 2.9648 26 6 3.3713 -7.2265 3.4800 27 8 1.9947 -6.7911 3.5146 28 6 2.0363 -5.4375 4.0164 29 6 1.6314 -2.2446 0.9708 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.0797 1.3445 0.1083 34 1 1.5611 1.9274 0.8309 35 1 2.5233 3.8014 -0.8495 36 1 3.0006 5.4641 -1.1881 37 1 1.6198 0.8210 2.5455 38 1 0.3008 -0.3658 2.4065 39 1 1.5363 -0.6202 4.5517 40 1 3.0399 -0.9050 3.6415 41 1 0.5099 -2.6131 3.5610 42 1 2.0787 -3.0660 4.2760 43 1 4.2992 -6.0645 1.8856 44 1 5.1217 -5.9263 3.4719 45 1 3.4863 -8.0671 2.7958 46 1 3.7090 -7.5024 4.4790 47 1 2.1679 -5.4377 5.0985 48 1 1.1257 -4.9037 3.7443 49 1 0.5537 -2.3430 0.8400 50 1 2.1438 -2.6510 0.0989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491909461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:12 Heat of formation + Delta-G solvation = -98.247221 kcal Electronic energy + Delta-G solvation = -30486.975974 eV Core-core repulsion = 26321.638964 eV Total energy + Delta-G solvation = -4165.337010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12679 -39.60493 -38.59766 -37.73804 -35.91061 -34.22320 -32.81594 -32.46533 -31.15098 -30.63258 -29.32628 -27.83005 -26.03288 -25.35516 -24.03146 -23.67579 -22.51521 -22.15052 -20.10608 -19.41860 -19.22454 -17.88057 -17.68493 -16.88350 -16.81358 -16.38190 -16.07922 -15.47285 -15.32773 -15.09558 -14.91898 -14.53654 -14.42439 -14.36094 -13.91879 -13.70790 -13.50699 -13.37769 -13.15561 -12.93578 -12.85040 -12.42619 -12.16479 -11.94311 -11.84280 -11.74047 -11.48083 -11.34073 -11.26018 -11.19420 -11.10916 -11.02554 -10.86714 -10.81008 -10.40690 -10.20144 -9.88551 -9.84999 -9.50599 -8.96384 -8.48309 -8.03803 -7.88779 -6.74710 -3.87672 2.31368 2.58949 3.31653 3.35551 3.51270 3.55695 3.84205 3.90199 3.94229 4.08371 4.30420 4.34960 4.42334 4.54709 4.58861 4.65524 4.71645 4.78795 4.89011 4.94455 5.00069 5.04819 5.11849 5.14455 5.20629 5.24229 5.31306 5.39389 5.39973 5.47659 5.56020 5.59180 5.68733 5.73849 5.77750 5.79585 5.86098 5.98110 6.03975 6.06961 6.20545 6.30334 6.50340 7.07270 7.17266 7.29785 7.81740 7.89739 8.08951 8.60998 8.81414 9.48379 9.89477 10.68733 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.002037 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.749759 B =13740.083411 C =13991.361364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.508 5.508 3 C 0.048 3.952 4 C 0.447 3.553 5 O -0.570 6.570 6 N -0.577 5.577 7 C -0.380 4.380 8 H 0.099 0.901 9 C -0.010 4.010 10 N -0.902 5.902 11 Si 1.091 2.909 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.073 3.927 16 H 0.083 0.917 17 C -0.158 4.158 18 C -0.130 4.130 19 C 0.102 3.898 20 N -0.610 5.610 21 C 0.525 3.475 22 O -0.529 6.529 23 C -0.146 4.146 24 H 0.111 0.889 25 C -0.148 4.148 26 C 0.045 3.955 27 O -0.370 6.370 28 C 0.054 3.946 29 C 0.121 3.879 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.375 0.625 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -19.361 20.032 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.231 5.231 3 C -0.084 4.084 4 C 0.232 3.768 5 O -0.453 6.453 6 N -0.215 5.215 7 C -0.510 4.510 8 H 0.117 0.883 9 C -0.213 4.213 10 N -0.541 5.541 11 Si 0.917 3.083 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.037 4.037 16 H 0.101 0.899 17 C -0.197 4.197 18 C -0.169 4.169 19 C -0.021 4.021 20 N -0.344 5.344 21 C 0.312 3.688 22 O -0.404 6.404 23 C -0.168 4.168 24 H 0.129 0.871 25 C -0.186 4.186 26 C -0.031 4.031 27 O -0.288 6.288 28 C -0.023 4.023 29 C -0.001 4.001 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.208 0.792 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.090 0.910 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.526 -18.894 17.465 25.735 hybrid contribution 0.152 -0.422 2.348 2.391 sum 0.678 -19.316 19.813 27.679 Atomic orbital electron populations 1.22641 0.86793 1.01571 1.02144 1.61685 1.08815 1.12774 1.39827 1.21859 1.00551 0.88996 0.96970 1.19645 0.85492 0.82629 0.88995 1.90493 1.43436 1.64330 1.47017 1.41938 1.50205 1.11426 1.17949 1.20524 1.36545 0.98617 0.95276 0.88320 1.26505 0.95599 0.93626 1.05536 1.70905 1.36725 1.39070 1.07418 0.83133 0.76377 0.75965 0.72806 1.20447 1.20987 1.21037 1.22074 0.99966 0.93337 0.88339 0.89868 1.22293 1.01461 1.00439 0.95496 1.21867 1.01791 0.94336 0.98891 1.21880 1.00129 0.95483 0.84561 1.48042 1.50284 1.28207 1.07832 1.20261 0.77723 0.80027 0.90744 1.90700 1.54799 1.65960 1.28989 1.22720 0.98659 0.98789 0.96630 0.87103 1.23028 0.98289 0.92155 1.05126 1.23466 0.81417 0.97523 1.00737 1.89180 1.25608 1.27835 1.86187 1.23511 0.97572 0.83514 0.97752 1.21617 1.00473 0.90340 0.87689 0.88511 0.92001 0.96197 0.89585 0.93401 0.79237 0.92825 0.91249 0.91009 0.90470 0.91302 0.90912 0.89750 0.87998 0.89897 0.88716 0.92079 0.90987 0.88603 0.91003 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.33 60.07 0.50 0.75 16 2 N -0.51 -8.28 4.45 -236.18 -1.05 -9.34 16 3 C 0.05 0.84 5.02 -4.97 -0.02 0.81 16 4 C 0.45 10.53 7.51 -10.99 -0.08 10.45 16 5 O -0.57 -15.44 13.88 5.55 0.08 -15.36 16 6 N -0.58 -14.52 5.28 -10.96 -0.06 -14.58 16 7 C -0.38 -10.71 9.68 -14.93 -0.14 -10.86 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 10 N -0.90 -25.30 13.68 55.50 0.76 -24.55 16 11 Si 1.09 24.41 29.92 -169.99 -5.09 19.32 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.07 0.91 2.34 -67.59 -0.16 0.75 16 16 H 0.08 1.10 7.93 -51.93 -0.41 0.68 16 17 C -0.16 -1.54 4.39 -26.69 -0.12 -1.66 16 18 C -0.13 -0.90 6.08 -26.62 -0.16 -1.06 16 19 C 0.10 0.67 5.02 -3.72 -0.02 0.65 16 20 N -0.61 -6.15 2.95 -172.77 -0.51 -6.66 16 21 C 0.53 6.02 7.01 -10.98 -0.08 5.94 16 22 O -0.53 -8.34 14.70 5.56 0.08 -8.26 16 23 C -0.15 -1.11 2.54 -90.20 -0.23 -1.34 16 24 H 0.11 0.57 7.59 -51.93 -0.39 0.17 16 25 C -0.15 -1.14 6.67 -25.16 -0.17 -1.31 16 26 C 0.05 0.33 7.63 37.93 0.29 0.62 16 27 O -0.37 -3.64 11.65 -35.23 -0.41 -4.05 16 28 C 0.05 0.37 5.99 37.93 0.23 0.60 16 29 C 0.12 1.50 5.75 -3.71 -0.02 1.48 16 30 H 0.10 1.89 5.88 -51.92 -0.31 1.59 16 31 H 0.06 0.85 6.21 -51.93 -0.32 0.53 16 32 H 0.02 0.27 6.49 -51.93 -0.34 -0.06 16 33 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 34 H 0.05 0.75 7.04 -51.93 -0.37 0.39 16 35 H 0.37 8.70 6.73 -40.82 -0.27 8.43 16 36 H 0.26 7.01 6.77 -40.82 -0.28 6.74 16 37 H 0.07 0.72 6.86 -51.93 -0.36 0.36 16 38 H 0.07 0.70 6.50 -51.93 -0.34 0.37 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.08 0.36 5.15 -51.93 -0.27 0.09 16 43 H 0.10 1.06 6.50 -51.93 -0.34 0.72 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.10 0.65 6.51 -51.93 -0.34 0.31 16 49 H 0.07 0.86 6.27 -51.93 -0.33 0.54 16 50 H 0.10 1.56 7.01 -51.93 -0.36 1.20 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -35.55 378.83 -8.33 -43.88 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.56 Total: 8.44 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.28 Total: 5.44 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.86 Total: -55.12 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.25 Total: -27.67 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.09 Total: 19.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.55 -8.33 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491909461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.370 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds